Lag0010205 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0010205
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DNA polymerase epsilon subunit 3
Location	chr9: 45404571 .. 45407606 (-)
RNA-Seq Expression	Lag0010205
Synteny	Lag0010205

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAAAAGTAGCGGCCGACATCGAAGAGCTTCCAAAGACTATAGTTCGCCGAGTGGTTAAAGAGAAGCTTTCTCAGTGCTCTCGGGACCAGGACATTTCCGTCAACAAAGACTCGCTTCTAGCTTTTTGCGAGAGCGCTCGAATCTTCATCCATTACCTCTCCGCTACGTAAGTTCCGCAACCTGCCCTGATGTTTTTGATTCTGAATGAAATTCTATCGGTTCTGATGTTCGAAACTAGGGTTTGTTGTTTCTCTGCTGTTTGCCGAAACAACGAAAGCGAAACGGATTAATGCCTTATAACTCTTGTTGTTATGCTGCTAGGGTTAACGAAATTGTAGTTATGTACTAGTTAATTCTTGCGTTCGTATTGACTTGTAGATCTCTGAGCAGGTCGAATGATGTATGCAAGGAAGCGAAGAGGCAGACGATAAAGGCGGAAGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCCGAATTGGTTAGGCCTCTCAAGGCCTCACTCAATGGTGCGTTAGCTTCCCACCGCTCTGTTTACATTTGGAAGGAAAAATTTCTCATTCGATCATGAAATTGCACGATTAATTTTTGAGAACTATGTTTTGTTAGCTTTTAACTTGCTATGCATTCCTTAAAGGAATGATCTAATAGTTCTCTTTGACCTGTGGTGCAGTTGCGCATTATTTATACACATGGATTTAATTTTCGATGAAGTTTTCTGTTTACCTTCCCTTTTTACTATTTGGTTGCTACCATGGTCTTGTCTTGTCCTATGCATGATTTCCCTGCCTCTTGTATTGTTAGACTTTCAATCTCAATTTTAGACGAAATTCATTAACACTTCATGAGTGTGGGATCTTTCATTGATAAATTAAGCCTTATGTAAAGATGAAGTTGACATAATAAGACAAATGAAATCCTTATCAATTAACCAACACACAAGACTAGTGGATTTGACATTATGATAGAACGGACGTTTATAATGTGAAAAACAGAAGCAAGTTCACATGAATATTAGATGCAAGTCTGGATGACTCTGCTGTTTGTTTCTGATGTTGAATTTTCATGTAATAATTAAAGGCTCTTTTTAGGGAAAACATAAATCACCTTTTTTTTTTTTTTGGATAGAACTCCTATGCTTTGAACAGGGTATTGGTGAAAGTTTTTATCTGCTTGACTCGTTCTACAACTAAAATTCATGTGACCTAGGAAAGTGCATTCTTTAAAGTTCATACTTCAATTCCTATGAACCCTTGTGTGACTTAAATAAGGTAATTGATCATTTGCGTAAGGTTTTACTAGATTGAACTTTTTTTTCTTAGGGAAATAGTGTAGAAATCAAATAACTCGTGCATACCTTTTATTAGAGGATTATATGATTTGATTAGATTGAACGTGCTCCTACAAAATAAATACTCAAATCCATATGAAACCTTGGGAATTCGTTGGATATTTCTTTGTATCCACAAATGCTATTTGAAGTATTGAGTTCTTAGAACTTGGCTATATAGCTATGAGTAAGAGTTGGGATTTACTTTCTGACTATGAAGCACGGACACGCCAAAATGGGGGGAGGATCTGTGTCGGACACGTGTCGGACACGGATTCGCCCGGACACGCTCCGGACACGTGTCCGACACGCAATTTTGCGTGTCCCTTTTTTTTTTTTTTTTTAATTTCGGACACGCGGGGACACGGCTGGATACGCCCACGGACACGCGGAGTCTAGGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGGGAGAGAGAGACCTCATATGCCGCCGCACCTCAAATGCTGCTGCAAGTTTATTTCATCTAAGTTTTTCTTCTTTATCTTTTAAACCCTGGATAAAACCCTCCTAACCTAGATAAAAGGGCCCAACCCAATAAACCCTCCTTTTTAAAGTTAAGATAAAAGGCCAGCCCAATAAAAAAACTGTTTTTAAATTAAGAAAAAATGTATGATTATTAAACTACTCATAAAATTTTATATATATACTATTTTTTTAAAAAATATATATATATACTAATCTTTTTTTTTTAAATATATATATATATATATTAAAAAAAAAAAAAAACAACGTATCTTCAACGTATCCGTATCTTAGTTTTTTAGAATTTGATGTATCGCCGTGTCCTGTCGTGTCCGTGTCCCGTATCCGTGTCCGTGTCCGTGCTTCTTAGCTTTCTGACGTTGTCGATTTCTACTTTCTATTAGTAGAAGTGTATACTTAGACCACACCAAAAAGTAGGTAAAGTGAGCAAGAAATTCCATTTAGTGGTGTGTAATCAGGTTGTGTTTATTGAATTCTGGAGTAGTGGTATCCTGCAATGTACTAAAACTAGTTCTAAACTTCTAATTTCACCTGTAGTTAGACATATAAGGATTTGTATGGAATCTGATCATACTGTATTTTTAGATGGAGAGATTGCATGATATGCTTTCTTAGTGCATATACAAAGATTTATGGATTCTAGTGTTGCAGTACAAGTTCATAGTGTAGATACTTTGTCCATCTCTTCTCTTGATTAACATTATGTTCTTGTCATTTTTGCTTGCTTATTATTAGGTTAGAGAGGGTAATTGGTCATGCTACGGTATGCCTATTCTTGTTGGATAGTACATACGAGCATAAGCTATTATTCTAGTGTGGAAGCTATTCCATTTGAAATCTGAACTATTATTGTGGTTAATGTAATGGGAAACAAATGTTATAGTCTATCTCATGATCGTCAAATTCTAGTTCAAACTTATCTAAGATCAATATTAAAGATAAGCTAGTTGAGCCTTTTTAATGATGTATGCATTGTGCAACTTTTGCTTGGCTTTATGTAGAATTCAGACGCAAGAATGCAGAAAAGAAGGCAGCTGCGTCCAGGGAAAGAGAAGTGAAAAAGAAGAGGAAGATAGAAGAGTCTACAATTGAAGGTACAGACGGTGGAAATGATGATAATGATAATGATGAAGTTGAAGAAGAAGAAGATGAAGTTGATGATGAAGATGAGAATGGTGCCAGTGATGACTGA

mRNA sequence

ATGGAGAAAAAAGTAGCGGCCGACATCGAAGAGCTTCCAAAGACTATAGTTCGCCGAGTGGTTAAAGAGAAGCTTTCTCAGTGCTCTCGGGACCAGGACATTTCCGTCAACAAAGACTCGCTTCTAGCTTTTTGCGAGAGCGCTCGAATCTTCATCCATTACCTCTCCGCTACATCTCTGAGCAGGTCGAATGATGTATGCAAGGAAGCGAAGAGGCAGACGATAAAGGCGGAAGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCCGAATTGGTTAGGCCTCTCAAGGCCTCACTCAATGAATTCAGACGCAAGAATGCAGAAAAGAAGGCAGCTGCGTCCAGGGAAAGAGAAGTGAAAAAGAAGAGGAAGATAGAAGAGTCTACAATTGAAGGTACAGACGGTGGAAATGATGATAATGATAATGATGAAGTTGAAGAAGAAGAAGATGAAGTTGATGATGAAGATGAGAATGGTGCCAGTGATGACTGA

Coding sequence (CDS)

ATGGAGAAAAAAGTAGCGGCCGACATCGAAGAGCTTCCAAAGACTATAGTTCGCCGAGTGGTTAAAGAGAAGCTTTCTCAGTGCTCTCGGGACCAGGACATTTCCGTCAACAAAGACTCGCTTCTAGCTTTTTGCGAGAGCGCTCGAATCTTCATCCATTACCTCTCCGCTACATCTCTGAGCAGGTCGAATGATGTATGCAAGGAAGCGAAGAGGCAGACGATAAAGGCGGAAGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCCGAATTGGTTAGGCCTCTCAAGGCCTCACTCAATGAATTCAGACGCAAGAATGCAGAAAAGAAGGCAGCTGCGTCCAGGGAAAGAGAAGTGAAAAAGAAGAGGAAGATAGAAGAGTCTACAATTGAAGGTACAGACGGTGGAAATGATGATAATGATAATGATGAAGTTGAAGAAGAAGAAGATGAAGTTGATGATGAAGATGAGAATGGTGCCAGTGATGACTGA

Protein sequence

MEKKVAADIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDVCKEAKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAEKKAAASREREVKKKRKIEESTIEGTDGGNDDNDNDEVEEEEDEVDDEDENGASDD

Homology

[Close]

BLAST of Lag0010205 vs. NCBI nr
Match: XP_022152961.1 (DNA polymerase epsilon subunit 3 [Momordica charantia])

HSP 1 Score: 228.0 bits (580), Expect = 5.8e-56
Identity = 140/169 (82.84%), Postives = 152/169 (89.94%), Query Frame = 0


Query: 1   MEKKVAADIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSL 60
           MEKKVAA+IEELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT  
Sbjct: 1   MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSAT-- 60

Query: 61  SRSNDVCKEAKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAEKKAAASREREV 120
             SND+CKE+KRQTIKA+DVLKALEDMEFPELVRPLKASLNEFRRK+A KKAAASRE+E 
Sbjct: 61  --SNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLNEFRRKSAGKKAAASREKEA 120

Query: 121 KKKRKIEESTIEG---TDGGNDDNDNDEVEEEEDEVDDED--ENGASDD 165
           KKKRKIEE T+E     D GNDDNDND  +E+EDEV+DED  ENGASD+
Sbjct: 121 KKKRKIEEPTVEDESKDDVGNDDNDNDH-DEDEDEVEDEDEEENGASDE 164

[Close]

BLAST of Lag0010205 vs. NCBI nr
Match: XP_038900596.1 (DNA polymerase epsilon subunit 3 [Benincasa hispida] >XP_038900597.1 DNA polymerase epsilon subunit 3 [Benincasa hispida])

HSP 1 Score: 228.0 bits (580), Expect = 5.8e-56
Identity = 138/170 (81.18%), Postives = 144/170 (84.71%), Query Frame = 0


Query: 1   MEKKVAADIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSL 60
           MEKK+ A IEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATS 
Sbjct: 1   MEKKIGAAIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSY 60

Query: 61  SRSNDVCKEAKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAEKKAAASREREV 120
               D+CKE+KRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNA KKAAASRE+EV
Sbjct: 61  ----DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAASREKEV 120

Query: 121 KKKRKIEESTIEGTDG------GNDDNDNDEVEEEEDEVDDEDENGASDD 165
           KKKRKIEE T+EGTDG      GNDDND D          +EDENGASDD
Sbjct: 121 KKKRKIEEPTVEGTDGESVDGVGNDDNDED---------GNEDENGASDD 157

[Close]

BLAST of Lag0010205 vs. NCBI nr
Match: XP_008449581.1 (PREDICTED: DNA polymerase epsilon subunit D [Cucumis melo])

HSP 1 Score: 221.9 bits (564), Expect = 4.2e-54
Identity = 134/168 (79.76%), Postives = 143/168 (85.12%), Query Frame = 0


Query: 1   MEKKVAADIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSL 60
           MEKK+ A IEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSAT  
Sbjct: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSAT-- 60

Query: 61  SRSNDVCKEAKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAEKKAAASREREV 120
             +ND+CKE+KRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNA KKAAA RE+EV
Sbjct: 61  --ANDICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAALREKEV 120

Query: 121 KKKRKIEESTIEGTDG----GNDDNDNDEVEEEEDEVDDEDENGASDD 165
           KKKRK+EE T+EGTDG    G  D+DNDE         DEDEN ASD+
Sbjct: 121 KKKRKVEEPTVEGTDGESIDGVGDDDNDE---------DEDENEASDN 155

[Close]

BLAST of Lag0010205 vs. NCBI nr
Match: KAG7035929.1 (DNA polymerase epsilon subunit 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 219.9 bits (559), Expect = 1.6e-53
Identity = 134/169 (79.29%), Postives = 148/169 (87.57%), Query Frame = 0


Query: 1   MEKKVAADIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSL 60
           MEKKV A+IEELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT  
Sbjct: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSAT-- 60

Query: 61  SRSNDVCKEAKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAEKKAAASREREV 120
             SND+CKE+KRQTIKAEDVLKALEDMEFPELVRPLKASLNEFR KNA KKAAASR +E 
Sbjct: 61  --SNDICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEA 120

Query: 121 KKKRKIEESTIEGTDGGNDD---NDNDEVEEEEDEVDDED--ENGASDD 165
           KK++  EE T+EGTDG + D   NDND+ +++EDEV+DED  ENG SDD
Sbjct: 121 KKRKIEEEPTVEGTDGESKDDVENDNDDNDKDEDEVEDEDEVENGGSDD 165

[Close]

BLAST of Lag0010205 vs. NCBI nr
Match: XP_004140162.1 (DNA polymerase epsilon subunit D [Cucumis sativus] >XP_031742448.1 DNA polymerase epsilon subunit D [Cucumis sativus] >KGN48033.1 hypothetical protein Csa_004222 [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 2.1e-53
Identity = 129/164 (78.66%), Postives = 144/164 (87.80%), Query Frame = 0


Query: 1   MEKKVAADIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSL 60
           MEKK+    EELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSAT  
Sbjct: 1   MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSAT-- 60

Query: 61  SRSNDVCKEAKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAEKKAAASREREV 120
             +ND+CKE+KRQTIKAEDVLKALEDMEFPELVRPLKASL+EFRRKNA KKAAASRE+E 
Sbjct: 61  --ANDICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEA 120

Query: 121 KKKRKIEESTIEGTDGGNDDNDNDEVEEEEDEVDDEDENGASDD 165
           KKKRK+EE T+EGTDG + D+  ++  ++ DE +DEDEN ASDD
Sbjct: 121 KKKRKVEEPTVEGTDGESIDDVGNDDNDDNDEDEDEDENRASDD 160

[Close]

BLAST of Lag0010205 vs. ExPASy Swiss-Prot
Match: Q3SZN5 (DNA polymerase epsilon subunit 3 OS=Bos taurus OX=9913 GN=POLE3 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.2e-09
Identity = 49/147 (33.33%), Postives = 85/147 (57.82%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDVCKEAK 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y    + S +N+   + K
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLY----ATSCANNFAMKGK 69

Query: 72  RQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAEKKAAASREREVKKKRKIEESTI 131
           R+T+ A DVL A+E+MEF   V PLK +L  +RR+   KK A+ ++++ K K+   E   
Sbjct: 70  RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKTDSEEQD 129

Query: 132 EGTDGGNDDNDNDEVEEEEDEVDDEDE 159
           +  D   +DND DE   EE+E ++E+E
Sbjct: 130 KSRD---EDNDEDEERLEEEEQNEEEE 144

[Close]

BLAST of Lag0010205 vs. ExPASy Swiss-Prot
Match: Q9NRF9 (DNA polymerase epsilon subunit 3 OS=Homo sapiens OX=9606 GN=POLE3 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.2e-09
Identity = 49/147 (33.33%), Postives = 85/147 (57.82%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDVCKEAK 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y    + S +N+   + K
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLY----ATSCANNFAMKGK 69

Query: 72  RQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAEKKAAASREREVKKKRKIEESTI 131
           R+T+ A DVL A+E+MEF   V PLK +L  +RR+   KK A+ ++++ K K+   E   
Sbjct: 70  RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKTDSEEQD 129

Query: 132 EGTDGGNDDNDNDEVEEEEDEVDDEDE 159
           +  D   +DND DE   EE+E ++E+E
Sbjct: 130 KSRD---EDNDEDEERLEEEEQNEEEE 144

[Close]

BLAST of Lag0010205 vs. ExPASy Swiss-Prot
Match: Q5R4W3 (DNA polymerase epsilon subunit 3 OS=Pongo abelii OX=9601 GN=POLE3 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.2e-09
Identity = 49/147 (33.33%), Postives = 85/147 (57.82%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDVCKEAK 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y    + S +N+   + K
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLY----ATSCANNFAMKGK 69

Query: 72  RQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAEKKAAASREREVKKKRKIEESTI 131
           R+T+ A DVL A+E+MEF   V PLK +L  +RR+   KK A+ ++++ K K+   E   
Sbjct: 70  RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKTDSEEQD 129

Query: 132 EGTDGGNDDNDNDEVEEEEDEVDDEDE 159
           +  D   +DND DE   EE+E ++E+E
Sbjct: 130 KSRD---EDNDEDEERLEEEEQNEEEE 144

[Close]

BLAST of Lag0010205 vs. ExPASy Swiss-Prot
Match: Q642A5 (DNA polymerase epsilon subunit 3 OS=Rattus norvegicus OX=10116 GN=Pole3 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-08
Identity = 47/147 (31.97%), Postives = 84/147 (57.14%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDVCKEAK 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y    + S +N+   + K
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLY----ATSCANNFAMKGK 69

Query: 72  RQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAEKKAAASREREVKKKRKIEESTI 131
           R+T+ A DVL A+E+MEF   V PLK +L  +RR+   KK A+ ++++ K K+  EE   
Sbjct: 70  RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKDCEEQ-- 129

Query: 132 EGTDGGNDDNDNDEVEEEEDEVDDEDE 159
              D   ++ D DE   +E+E ++E+E
Sbjct: 130 ---DKSREEEDEDEERLDEEEQNEEEE 142

[Close]

BLAST of Lag0010205 vs. ExPASy Swiss-Prot
Match: Q9JKP7 (DNA polymerase epsilon subunit 3 OS=Mus musculus OX=10090 GN=Pole3 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07
Identity = 45/148 (30.41%), Postives = 82/148 (55.41%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATSLSRSNDVCKEAK 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y    + S +N+   + K
Sbjct: 10  LPNAVITRIIKEAL-----PDGVNISKEARSAISRAASVFVLY----ATSCANNFAMKGK 69

Query: 72  RQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAEKKAAASREREVKKKRKIEESTI 131
           R+T+ A DVL A+E+MEF   + PLK +L  +RR    KK A+ ++++ K K+  EE   
Sbjct: 70  RKTLNASDVLSAMEEMEFQRFITPLKEALEAYRRDEKGKKEASEQKKKDKDKKDSEE--- 129

Query: 132 EGTDGGNDDNDNDEVEEEEDEVDDEDEN 160
                   D   +  EE+E+ +D++D+N
Sbjct: 130 -------QDKSREVEEEDEERLDEDDQN 138

The following BLAST results are available for this feature:

BLAST of Lag0010205 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152961.1	5.8e-56	82.84	DNA polymerase epsilon subunit 3 [Momordica charantia]	[more]
XP_038900596.1	5.8e-56	81.18	DNA polymerase epsilon subunit 3 [Benincasa hispida] >XP_038900597.1 DNA polymer...	[more]
XP_008449581.1	4.2e-54	79.76	PREDICTED: DNA polymerase epsilon subunit D [Cucumis melo]	[more]
KAG7035929.1	1.6e-53	79.29	DNA polymerase epsilon subunit 3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_004140162.1	2.1e-53	78.66	DNA polymerase epsilon subunit D [Cucumis sativus] >XP_031742448.1 DNA polymeras...	[more]

BLAST of Lag0010205 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3SZN5	7.2e-09	33.33	DNA polymerase epsilon subunit 3 OS=Bos taurus OX=9913 GN=POLE3 PE=2 SV=1	[more]
Q9NRF9	7.2e-09	33.33	DNA polymerase epsilon subunit 3 OS=Homo sapiens OX=9606 GN=POLE3 PE=1 SV=1	[more]
Q5R4W3	7.2e-09	33.33	DNA polymerase epsilon subunit 3 OS=Pongo abelii OX=9601 GN=POLE3 PE=2 SV=1	[more]
Q642A5	3.6e-08	31.97	DNA polymerase epsilon subunit 3 OS=Rattus norvegicus OX=10116 GN=Pole3 PE=1 SV=...	[more]
Q9JKP7	1.8e-07	30.41	DNA polymerase epsilon subunit 3 OS=Mus musculus OX=10090 GN=Pole3 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 139..159
None	No IPR available	COILS	Coil	Coil	coord: 67..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..164
None	No IPR available	PANTHER	PTHR46172	DNA POLYMERASE EPSILON SUBUNIT 3	coord: 3..159
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 11..84 e-value: 4.2E-6 score: 26.9
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..161 e-value: 3.0E-30 score: 106.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 12..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0010205.1	Lag0010205.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0031507	heterochromatin assembly
biological_process	GO:0006272	leading strand elongation
biological_process	GO:0042766	nucleosome mobilization
biological_process	GO:0006413	translational initiation
cellular_component	GO:0008623	CHRAC
cellular_component	GO:0008622	epsilon DNA polymerase complex
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003743	translation initiation factor activity