Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGATCCTCTCGTGGTCGGAAGAGTGGTCGGAGATGTCGTCGACGCCTTTTCCCCGACAGTGAAGATGACTGTCACTTATCATTCAAACAAGATTAAGGTGTTCAATGGCCATGAATTGCTTCCAAATTTTGTAACACTTAAACCTAAGGTTGAGGTTCTTGGAGGTGACCTTAGATCCTTCTTCACACTGGTCTGATCATATTCAATTACAACCATCTTCTCATTTTCTTATATATATATATATATATATCATTCACTTAATTTTCTAATTTATTATTCGACTAATTAATTTTGTAGGTCATGACCGATCCTGATGTTCCTGGTCCAAGTGATCCTTACTTGAGAGAGCACCTTCACTGGTATCATCTTCTTTAAACCCCGTTTGGAAGGGTGTATAGATATGAATACCCTAATTTTCAAAAATTGAAAAAAAAAAACATTATATAAAGTGATATTATTGTTATAATAGGTGCCAAATCAACAAACAACGGAATCTAGACTTTAATTTTCTTAACCATTTGGGTTACGTTTATATCCGTCCGAAAACATGTTTTTGTTGTTGTATCATGTTATTTTCTTATACATATGACCAATAAAACTTTGGATATAACTTTGATTTCAGGATAGTCACAGACATCCCAGGCACAACAGATTCCACTTTTGGTAAACCCCATATTTGTTTTTTTTTTTTGGTTTGTCATTCTCTCAAAACACAGCTTTATTTTCCATTTGCATCAAATTAATTACATGATATTATTATTGTTCAAATAGGAAAAGAAGTAGTGAAATACGAAGTTCCAAGTCCAAACATAGGGATCCACAGATTCGTGTTCCTTTTGTACAAACAAAAACGAAGACAAACAGTGATGGCGCCTCCTTCAACTTCAAGAGATGGTTTCAATGCAAGAAAATTTGCACAAGAGAATGATCTTGGCCTTCCTGTTGCTGCTGTCTATTTCAATGCTCAAAGGGCCACGGCCGCCAGAAGAAGATAG
mRNA sequence
ATGTCAGATCCTCTCGTGGTCGGAAGAGTGGTCGGAGATGTCGTCGACGCCTTTTCCCCGACAGTGAAGATGACTGTCACTTATCATTCAAACAAGATTAAGGTGTTCAATGGCCATGAATTGCTTCCAAATTTTGTAACACTTAAACCTAAGGTTGAGGTTCTTGGAGGTGACCTTAGATCCTTCTTCACACTGGTCATGACCGATCCTGATGTTCCTGGTCCAAGTGATCCTTACTTGAGAGAGCACCTTCACTGGATAGTCACAGACATCCCAGGCACAACAGATTCCACTTTTGGAAAAGAAGTAGTGAAATACGAAGTTCCAAGTCCAAACATAGGGATCCACAGATTCGTGTTCCTTTTGTACAAACAAAAACGAAGACAAACAGTGATGGCGCCTCCTTCAACTTCAAGAGATGGTTTCAATGCAAGAAAATTTGCACAAGAGAATGATCTTGGCCTTCCTGTTGCTGCTGTCTATTTCAATGCTCAAAGGGCCACGGCCGCCAGAAGAAGATAG
Coding sequence (CDS)
ATGTCAGATCCTCTCGTGGTCGGAAGAGTGGTCGGAGATGTCGTCGACGCCTTTTCCCCGACAGTGAAGATGACTGTCACTTATCATTCAAACAAGATTAAGGTGTTCAATGGCCATGAATTGCTTCCAAATTTTGTAACACTTAAACCTAAGGTTGAGGTTCTTGGAGGTGACCTTAGATCCTTCTTCACACTGGTCATGACCGATCCTGATGTTCCTGGTCCAAGTGATCCTTACTTGAGAGAGCACCTTCACTGGATAGTCACAGACATCCCAGGCACAACAGATTCCACTTTTGGAAAAGAAGTAGTGAAATACGAAGTTCCAAGTCCAAACATAGGGATCCACAGATTCGTGTTCCTTTTGTACAAACAAAAACGAAGACAAACAGTGATGGCGCCTCCTTCAACTTCAAGAGATGGTTTCAATGCAAGAAAATTTGCACAAGAGAATGATCTTGGCCTTCCTGTTGCTGCTGTCTATTTCAATGCTCAAAGGGCCACGGCCGCCAGAAGAAGATAG
Protein sequence
MSDPLVVGRVVGDVVDAFSPTVKMTVTYHSNKIKVFNGHELLPNFVTLKPKVEVLGGDLRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPNIGIHRFVFLLYKQKRRQTVMAPPSTSRDGFNARKFAQENDLGLPVAAVYFNAQRATAARRR
Homology
BLAST of Lag0010191 vs. NCBI nr
Match:
XP_022153047.1 (CEN-like protein 2 [Momordica charantia])
HSP 1 Score: 328.2 bits (840), Expect = 4.4e-86
Identity = 161/173 (93.06%), Postives = 166/173 (95.95%), Query Frame = 0
Query: 1 MSDPLVVGRVVGDVVDAFSPTVKMTVTYHSNKIKVFNGHELLPNFVTLKPKVEVLGGDLR 60
MSDPLVVGRV+GDVVDAFSPTVKMTVTYHSNK KV NGHELLP FVTLKPKVEVLGGDLR
Sbjct: 5 MSDPLVVGRVIGDVVDAFSPTVKMTVTYHSNK-KVCNGHELLPTFVTLKPKVEVLGGDLR 64
Query: 61 SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPNIGIHRFVF 120
SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDS+FGKEVVKYEVPSPNIGIHRFVF
Sbjct: 65 SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVKYEVPSPNIGIHRFVF 124
Query: 121 LLYKQKRRQTVMAPPSTSRDGFNARKFAQENDLGLPVAAVYFNAQRATAARRR 174
LL+KQKRRQTV P+ SRDGFNARKFAQ+NDLGLPVAAVYFNAQRATAARRR
Sbjct: 125 LLFKQKRRQTVKDLPANSRDGFNARKFAQDNDLGLPVAAVYFNAQRATAARRR 176
BLAST of Lag0010191 vs. NCBI nr
Match:
KAG6570484.1 (CEN-like protein 2, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 324.3 bits (830), Expect = 6.3e-85
Identity = 160/174 (91.95%), Postives = 165/174 (94.83%), Query Frame = 0
Query: 1 MSDPLVVGRVVGDVVDAFSPTVKMTVTYHSNKIKVFNGHELLPNFVTLKPKVEVLGGDLR 60
MSDPLVVGRVVGDV+DAFSPTVKMTVTYHSNK KV NGHELLPNF+TLKPKVEVLGGDLR
Sbjct: 6 MSDPLVVGRVVGDVIDAFSPTVKMTVTYHSNK-KVSNGHELLPNFITLKPKVEVLGGDLR 65
Query: 61 SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPNIGIHRFVF 120
SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPN+GIHRFVF
Sbjct: 66 SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPNVGIHRFVF 125
Query: 121 LLYKQKRRQTVMAP-PSTSRDGFNARKFAQENDLGLPVAAVYFNAQRATAARRR 174
LLYKQ RRQTV P S SRDGFNAR+FA+EN LGLPVAAVYFNAQRATAARRR
Sbjct: 126 LLYKQARRQTVKPPAASASRDGFNARRFAEENGLGLPVAAVYFNAQRATAARRR 178
BLAST of Lag0010191 vs. NCBI nr
Match:
XP_022943720.1 (CEN-like protein 2 [Cucurbita moschata] >KAG7010349.1 CEN-like protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 322.8 bits (826), Expect = 1.8e-84
Identity = 159/174 (91.38%), Postives = 164/174 (94.25%), Query Frame = 0
Query: 1 MSDPLVVGRVVGDVVDAFSPTVKMTVTYHSNKIKVFNGHELLPNFVTLKPKVEVLGGDLR 60
MSDPLVVGRVVGDV+DAFSPTVKMTVTYHSNK KV NGHELLPNF+TLKPKVEV GGDLR
Sbjct: 4 MSDPLVVGRVVGDVIDAFSPTVKMTVTYHSNK-KVSNGHELLPNFITLKPKVEVFGGDLR 63
Query: 61 SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPNIGIHRFVF 120
SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPN+GIHRFVF
Sbjct: 64 SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPNVGIHRFVF 123
Query: 121 LLYKQKRRQTVMAP-PSTSRDGFNARKFAQENDLGLPVAAVYFNAQRATAARRR 174
LLYKQ RRQTV P S SRDGFNAR+FA+EN LGLPVAAVYFNAQRATAARRR
Sbjct: 124 LLYKQARRQTVKPPAASASRDGFNARRFAEENGLGLPVAAVYFNAQRATAARRR 176
BLAST of Lag0010191 vs. NCBI nr
Match:
XP_023512960.1 (CEN-like protein 2 isoform X1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 322.0 bits (824), Expect = 3.1e-84
Identity = 159/174 (91.38%), Postives = 164/174 (94.25%), Query Frame = 0
Query: 1 MSDPLVVGRVVGDVVDAFSPTVKMTVTYHSNKIKVFNGHELLPNFVTLKPKVEVLGGDLR 60
MSDPLVVGRVVGDV+DAFSPTVKMTVTYHSNK KV NGHELLPN +TLKPKVEVLGGDLR
Sbjct: 6 MSDPLVVGRVVGDVIDAFSPTVKMTVTYHSNK-KVSNGHELLPNLITLKPKVEVLGGDLR 65
Query: 61 SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPNIGIHRFVF 120
SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPN+GIHRFVF
Sbjct: 66 SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPNVGIHRFVF 125
Query: 121 LLYKQKRRQTVMAP-PSTSRDGFNARKFAQENDLGLPVAAVYFNAQRATAARRR 174
LLYKQ RRQTV P S SRDGFNAR+FA+EN LGLPVAAVYFNAQRATAARRR
Sbjct: 126 LLYKQTRRQTVKPPAASASRDGFNARRFAEENGLGLPVAAVYFNAQRATAARRR 178
BLAST of Lag0010191 vs. NCBI nr
Match:
XP_023512961.1 (CEN-like protein 2 isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 322.0 bits (824), Expect = 3.1e-84
Identity = 159/174 (91.38%), Postives = 164/174 (94.25%), Query Frame = 0
Query: 1 MSDPLVVGRVVGDVVDAFSPTVKMTVTYHSNKIKVFNGHELLPNFVTLKPKVEVLGGDLR 60
MSDPLVVGRVVGDV+DAFSPTVKMTVTYHSNK KV NGHELLPN +TLKPKVEVLGGDLR
Sbjct: 1 MSDPLVVGRVVGDVIDAFSPTVKMTVTYHSNK-KVSNGHELLPNLITLKPKVEVLGGDLR 60
Query: 61 SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPNIGIHRFVF 120
SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPN+GIHRFVF
Sbjct: 61 SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPNVGIHRFVF 120
Query: 121 LLYKQKRRQTVMAP-PSTSRDGFNARKFAQENDLGLPVAAVYFNAQRATAARRR 174
LLYKQ RRQTV P S SRDGFNAR+FA+EN LGLPVAAVYFNAQRATAARRR
Sbjct: 121 LLYKQTRRQTVKPPAASASRDGFNARRFAEENGLGLPVAAVYFNAQRATAARRR 173
BLAST of Lag0010191 vs. ExPASy Swiss-Prot
Match:
Q41261 (Protein CENTRORADIALIS OS=Antirrhinum majus OX=4151 GN=CEN PE=1 SV=1)
HSP 1 Score: 276.2 bits (705), Expect = 2.6e-73
Identity = 134/175 (76.57%), Postives = 153/175 (87.43%), Query Frame = 0
Query: 2 SDPLVVGRVVGDVVDAFSPTVKMTVTYHS-NKIK-VFNGHELLPNFVTLKPKVEVLGGDL 61
SDPLV+GRV+GDVVD F+ TVKM+V Y+S N IK V+NGHEL P+ VT P+VEV GGD+
Sbjct: 7 SDPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDM 66
Query: 62 RSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPNIGIHRFV 121
RSFFTL+MTDPDVPGPSDPYLREHLHWIVTDIPGTTDS+FGKEVV YE+P PNIGIHRFV
Sbjct: 67 RSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHRFV 126
Query: 122 FLLYKQKRR-QTVMAPPSTSRDGFNARKFAQENDLGLPVAAVYFNAQRATAARRR 174
FLL+KQK+R Q +++PP RDGFN RKF QEN+LGLPVAAV+FN QR TAARRR
Sbjct: 127 FLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRETAARRR 181
BLAST of Lag0010191 vs. ExPASy Swiss-Prot
Match:
Q9XH43 (CEN-like protein 2 OS=Nicotiana tabacum OX=4097 GN=CET2 PE=2 SV=1)
HSP 1 Score: 275.0 bits (702), Expect = 5.7e-73
Identity = 131/173 (75.72%), Postives = 153/173 (88.44%), Query Frame = 0
Query: 1 MSDPLVVGRVVGDVVDAFSPTVKMTVTYHSNKIKVFNGHELLPNFVTLKPKVEVLGGDLR 60
MSDPLV+GRV+G+VVD F+P+VKM+VTY+S+K V+NGHEL P+ VT KP+VEV GGDLR
Sbjct: 5 MSDPLVIGRVIGEVVDYFTPSVKMSVTYNSSK-HVYNGHELFPSSVTSKPRVEVHGGDLR 64
Query: 61 SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPNIGIHRFVF 120
SFFT++M DPDVPGPSDPYLREHLHWIVTDIPGTTD +FGKE+V YE+P PNIGIHRFVF
Sbjct: 65 SFFTMIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGKEIVGYEMPRPNIGIHRFVF 124
Query: 121 LLYKQKRRQTVMAPPSTSRDGFNARKFAQENDLGLPVAAVYFNAQRATAARRR 174
LL+KQK+RQTV+ P SRD FN RKFA+EN+LG PVAAV+FN QR TAARRR
Sbjct: 125 LLFKQKKRQTVLTAP-LSRDRFNTRKFAEENELGSPVAAVFFNCQRETAARRR 175
BLAST of Lag0010191 vs. ExPASy Swiss-Prot
Match:
Q9XH42 (CEN-like protein 4 OS=Nicotiana tabacum OX=4097 GN=CET4 PE=2 SV=1)
HSP 1 Score: 271.2 bits (692), Expect = 8.3e-72
Identity = 128/173 (73.99%), Postives = 153/173 (88.44%), Query Frame = 0
Query: 1 MSDPLVVGRVVGDVVDAFSPTVKMTVTYHSNKIKVFNGHELLPNFVTLKPKVEVLGGDLR 60
MSDPLV+GRV+G+VVD F+P+VKM+VTY+S+K V+NGHEL P+ VT KP+VEV GGDLR
Sbjct: 5 MSDPLVIGRVIGEVVDYFTPSVKMSVTYNSSK-HVYNGHELFPSSVTSKPRVEVHGGDLR 64
Query: 61 SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPNIGIHRFVF 120
SFFTL+M DPDVPGPSDPYLREHLHWIVTDIPGTTD +FG+E+V YE+P PNIGIHRFVF
Sbjct: 65 SFFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREIVGYEMPRPNIGIHRFVF 124
Query: 121 LLYKQKRRQTVMAPPSTSRDGFNARKFAQENDLGLPVAAVYFNAQRATAARRR 174
LL+KQK+RQT+++ P SRD FN RKF++EN+LG PVAA +FN QR TAARRR
Sbjct: 125 LLFKQKKRQTLLSAP-LSRDRFNTRKFSEENELGSPVAAAFFNCQRETAARRR 175
BLAST of Lag0010191 vs. ExPASy Swiss-Prot
Match:
Q9ZNV5 (Protein CENTRORADIALIS-like OS=Arabidopsis thaliana OX=3702 GN=CEN PE=2 SV=1)
HSP 1 Score: 266.5 bits (680), Expect = 2.0e-70
Identity = 130/172 (75.58%), Postives = 149/172 (86.63%), Query Frame = 0
Query: 2 SDPLVVGRVVGDVVDAFSPTVKMTVTYHSNKIKVFNGHELLPNFVTLKPKVEVLGGDLRS 61
SDPL+VGRV+GDVVD VKMTVTY+S+K +V+NGHEL P+ VT KPKVEV GGD+RS
Sbjct: 6 SDPLMVGRVIGDVVDNCLQAVKMTVTYNSDK-QVYNGHELFPSVVTYKPKVEVHGGDMRS 65
Query: 62 FFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPNIGIHRFVFL 121
FFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTD +FGKE++ YE+P PNIGIHRFV+L
Sbjct: 66 FFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDVSFGKEIIGYEMPRPNIGIHRFVYL 125
Query: 122 LYKQKRRQTVMAPPSTSRDGFNARKFAQENDLGLPVAAVYFNAQRATAARRR 174
L+KQ RR +V++ PS RD FN R+FA ENDLGLPVAAV+FN QR TAARRR
Sbjct: 126 LFKQTRRGSVVSVPS-YRDQFNTREFAHENDLGLPVAAVFFNCQRETAARRR 175
BLAST of Lag0010191 vs. ExPASy Swiss-Prot
Match:
O82088 (Protein SELF-PRUNING OS=Solanum lycopersicum OX=4081 GN=SP PE=2 SV=1)
HSP 1 Score: 264.6 bits (675), Expect = 7.8e-70
Identity = 125/173 (72.25%), Postives = 150/173 (86.71%), Query Frame = 0
Query: 1 MSDPLVVGRVVGDVVDAFSPTVKMTVTYHSNKIKVFNGHELLPNFVTLKPKVEVLGGDLR 60
M +PLV+GRV+G+VVD F P+VKM+V Y++NK V+NGHE P+ VT KP+VEV GGDLR
Sbjct: 5 MCEPLVIGRVIGEVVDYFCPSVKMSVVYNNNK-HVYNGHEFFPSSVTSKPRVEVHGGDLR 64
Query: 61 SFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSTFGKEVVKYEVPSPNIGIHRFVF 120
SFFTL+M DPDVPGPSDPYLREHLHWIVTDIPGTTD +FG+EVV YE+P PNIGIHRFVF
Sbjct: 65 SFFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREVVGYEMPRPNIGIHRFVF 124
Query: 121 LLYKQKRRQTVMAPPSTSRDGFNARKFAQENDLGLPVAAVYFNAQRATAARRR 174
LL+KQK+RQT+ + P SRD F++RKF++EN+LG PVAAV+FN QR TAARRR
Sbjct: 125 LLFKQKKRQTISSAP-VSRDQFSSRKFSEENELGSPVAAVFFNCQRETAARRR 175
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022153047.1 | 4.4e-86 | 93.06 | CEN-like protein 2 [Momordica charantia] | [more] |
KAG6570484.1 | 6.3e-85 | 91.95 | CEN-like protein 2, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
XP_022943720.1 | 1.8e-84 | 91.38 | CEN-like protein 2 [Cucurbita moschata] >KAG7010349.1 CEN-like protein 2, partia... | [more] |
XP_023512960.1 | 3.1e-84 | 91.38 | CEN-like protein 2 isoform X1 [Cucurbita pepo subsp. pepo] | [more] |
XP_023512961.1 | 3.1e-84 | 91.38 | CEN-like protein 2 isoform X2 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Q41261 | 2.6e-73 | 76.57 | Protein CENTRORADIALIS OS=Antirrhinum majus OX=4151 GN=CEN PE=1 SV=1 | [more] |
Q9XH43 | 5.7e-73 | 75.72 | CEN-like protein 2 OS=Nicotiana tabacum OX=4097 GN=CET2 PE=2 SV=1 | [more] |
Q9XH42 | 8.3e-72 | 73.99 | CEN-like protein 4 OS=Nicotiana tabacum OX=4097 GN=CET4 PE=2 SV=1 | [more] |
Q9ZNV5 | 2.0e-70 | 75.58 | Protein CENTRORADIALIS-like OS=Arabidopsis thaliana OX=3702 GN=CEN PE=2 SV=1 | [more] |
O82088 | 7.8e-70 | 72.25 | Protein SELF-PRUNING OS=Solanum lycopersicum OX=4081 GN=SP PE=2 SV=1 | [more] |