Lag0010178 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0010178
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	60S acidic ribosomal protein family
Location	chr9: 45187858 .. 45188575 (-)
RNA-Seq Expression	Lag0010178
Synteny	Lag0010178

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTGGTCGCTGCTTATTTGTTGGCCGTACTCGGTGGCAACACCAGCCCCGGACTCGATGATGTGAAGTATATTCTTAATTCAGGTTCTTCTTTCACAATTGTTCTTTTACTTTAAGTTGAATTTGCTACACTGGTTTTGTTACTTTTTGAGATAGAGTTTATGTATTAGGGTTTAGGAATGGTTGGTTTTTGTTCGATCCGGAAGTTTAGGTTAGAATGGCATTTTTCTTTATAGATTTAGTCAGGGAGTTGCTGGAAACGAAGTGAAATCTTGAAATGTCTGACTCGAAATAATGGGTGCTCTTGGTGAATTTTTGTTAAGATTTCTGGTGGGGTTTTATTTACAGTCGGGGCTGAGGTCGATGAAGACAGGATTGATTCGCTATTATCCCAAGTGAAAGGAAAGGATATCGCGGAATTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTGCCGTCTGGTGGCGGTGCAGTCGCCGTCGCCACCCCTGCTGGTGGTGCCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAGAGGAGAAAGTCGAGGAGAAAGAAGAATCCGACGATGTAAGTTTCTAACCAGTTTAGGATTACACATTTTTTTCATATTCGTATCTCTGAATTACTCTATAGTAATAATGGCAACTAAGTTGTATGTTCTATCTTTCTGCAGGATATGGGTTTCAGCCTCTTTGACTGA

mRNA sequence

ATGAAGGTGGTCGCTGCTTATTTGTTGGCCGTACTCGGTGGCAACACCAGCCCCGGACTCGATGATGTGAAGTATATTCTTAATTCAGTCGGGGCTGAGGTCGATGAAGACAGGATTGATTCGCTATTATCCCAAGTGAAAGGAAAGGATATCGCGGAATTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTGCCGTCTGGTGGCGGTGCAGTCGCCGTCGCCACCCCTGCTGGTGGTGCCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAGAGGAGAAAGTCGAGGAGAAAGAAGAATCCGACGATGATATGGGTTTCAGCCTCTTTGACTGA

Coding sequence (CDS)

ATGAAGGTGGTCGCTGCTTATTTGTTGGCCGTACTCGGTGGCAACACCAGCCCCGGACTCGATGATGTGAAGTATATTCTTAATTCAGTCGGGGCTGAGGTCGATGAAGACAGGATTGATTCGCTATTATCCCAAGTGAAAGGAAAGGATATCGCGGAATTGATAGCCTCCGGACGGGAGAAGTTGGCGTCAGTGCCGTCTGGTGGCGGTGCAGTCGCCGTCGCCACCCCTGCTGGTGGTGCCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAGAGGAGAAAGTCGAGGAGAAAGAAGAATCCGACGATGATATGGGTTTCAGCCTCTTTGACTGA

Protein sequence

MKVVAAYLLAVLGGNTSPGLDDVKYILNSVGAEVDEDRIDSLLSQVKGKDIAELIASGREKLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD

Homology

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BLAST of Lag0010178 vs. NCBI nr
Match: KAG6570492.1 (60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197.6 bits (501), Expect = 5.9e-47
Identity = 110/115 (95.65%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKYILNSVGAEVDEDRIDSLLSQVKGKDIAELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVDEDRIDSLLSQVKGKDI ELIASGRE
Sbjct: 70  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 129

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAV +A PAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 130 KLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 184

[Close]

BLAST of Lag0010178 vs. NCBI nr
Match: KAG7010354.1 (60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197.6 bits (501), Expect = 5.9e-47
Identity = 110/115 (95.65%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKYILNSVGAEVDEDRIDSLLSQVKGKDIAELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVDEDRIDSLLSQVKGKDI ELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAV +A PAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Lag0010178 vs. NCBI nr
Match: XP_022986046.1 (60S acidic ribosomal protein P2B-like [Cucurbita maxima])

HSP 1 Score: 196.1 bits (497), Expect = 1.7e-46
Identity = 109/115 (94.78%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKYILNSVGAEVDEDRIDSLLSQVKGKDIAELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVDEDRIDSLLSQVKGKDI ELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAV +A PAGGAAGGGAAPAA EQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGAAGGGAAPAAVEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Lag0010178 vs. NCBI nr
Match: XP_022944125.1 (60S acidic ribosomal protein P2B-like [Cucurbita moschata])

HSP 1 Score: 196.1 bits (497), Expect = 1.7e-46
Identity = 109/115 (94.78%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKYILNSVGAEVDEDRIDSLLSQVKGKDIAELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVDEDRIDSLLSQVKGKDI ELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAV +A PAGG AGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Lag0010178 vs. NCBI nr
Match: XP_023512871.1 (60S acidic ribosomal protein P2B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.5 bits (493), Expect = 5.0e-46
Identity = 109/115 (94.78%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKYILNSVGAEVDEDRIDSLLSQVKGKDIAELIASGRE 60
           MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVDEDRIDSLLSQVKGKDI ELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAV +A PAGGAAGGGAA AAAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGAAGGGAAAAAAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Lag0010178 vs. ExPASy Swiss-Prot
Match: O24415 (60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.0e-34
Identity = 83/115 (72.17%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKYILNSVGAEVDEDRIDSLLSQVKGKDIAELIASGRE 60
           MKV+AAYLLAVLGGNTSP  DDVK IL SVGAE DE++++ LL+++K KDI E+IA+GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           +L+SVPSGGGA+ +  PA   AGGGAAP A E KKEEKVEEKEESD+DMGFSLFD
Sbjct: 61  RLSSVPSGGGAIDMGAPA-AVAGGGAAP-AEEAKKEEKVEEKEESDEDMGFSLFD 113

[Close]

BLAST of Lag0010178 vs. ExPASy Swiss-Prot
Match: P46252 (60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3)

HSP 1 Score: 138.3 bits (347), Expect = 5.6e-32
Identity = 84/115 (73.04%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKYILNSVGAEVDEDRIDSLLSQVKGKDIAELIASGRE 60
           MK VAAYLLAVL GN SP  DD+  IL SVG EVD ++++ LLSQ+ GKDI ELIA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           K ASVP GGG VAVA  A   A GGAAP AAE KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KFASVPCGGGGVAVA--AAAPAAGGAAP-AAEAKKEEKVEEKEESDDDMGFSLFD 112

[Close]

BLAST of Lag0010178 vs. ExPASy Swiss-Prot
Match: P51407 (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 SV=2)

HSP 1 Score: 136.3 bits (342), Expect = 2.1e-31
Identity = 82/116 (70.69%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKYILNSVGAEVDEDRIDSLLSQVKGKDIAELIASGRE 60
           MKVVAA+LLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+AELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPS GGG VAVA+   G  GGG AP AAE KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAP-AAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Lag0010178 vs. ExPASy Swiss-Prot
Match: Q9SLF7 (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.7e-31
Identity = 82/116 (70.69%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKYILNSVGAEVDEDRIDSLLSQVKGKDIAELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+AELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPS GGG VAVA+   G  GGG A +AAE KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGA-SAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Lag0010178 vs. ExPASy Swiss-Prot
Match: P41099 (60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-30
Identity = 81/115 (70.43%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGLDDVKYILNSVGAEVDEDRIDSLLSQVKGKDIAELIASGRE 60
           MKV+AA+LLA+LGGNTSP  +D+K IL SVGA+ D+D+I+ LLSQVKGKDI ELIASGRE
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAVAVATPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 116
           +LASVPSGGG VAVA  AGG  G   A AA E KKEEK E  EESD+++GFSLFD
Sbjct: 61  RLASVPSGGG-VAVAAAAGGGGGDAPAAAAEEPKKEEKSE--EESDEELGFSLFD 112

The following BLAST results are available for this feature:

BLAST of Lag0010178 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570492.1	5.9e-47	95.65	60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAG7010354.1	5.9e-47	95.65	60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022986046.1	1.7e-46	94.78	60S acidic ribosomal protein P2B-like [Cucurbita maxima]	[more]
XP_022944125.1	1.7e-46	94.78	60S acidic ribosomal protein P2B-like [Cucurbita moschata]	[more]
XP_023512871.1	5.0e-46	94.78	60S acidic ribosomal protein P2B-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0010178 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24415	6.0e-34	72.17	60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1	[more]
P46252	5.6e-32	73.04	60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3	[more]
P51407	2.1e-31	70.69	60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 ...	[more]
Q9SLF7	4.7e-31	70.69	60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 ...	[more]
P41099	1.4e-30	70.43	60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001859	Trypanosoma cruzi ribosomal protein P2-like	PRINTS	PR00456	RIBOSOMALP2	coord: 21..32 score: 25.0 coord: 36..47 score: 25.0 coord: 78..92 score: 60.0
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..59 e-value: 3.3E-26 score: 93.2
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 18..114 e-value: 5.1E-25 score: 87.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..115
None	No IPR available	PANTHER	PTHR21141:SF83	60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE	coord: 2..115
IPR044076	Ribosomal protein P2	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 2..115
IPR044076	Ribosomal protein P2	CDD	cd05833	Ribosomal_P2	coord: 1..115 e-value: 3.30689E-34 score: 112.357
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 2..115 score: 16.531359

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0010178.1	Lag0010178.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002182	cytoplasmic translational elongation
biological_process	GO:0006412	translation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome