Lag0010166 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0010166
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionStress-response A/B barrel domain-containing protein
Locationchr9: 45116044 .. 45116889 (-)
RNA-Seq ExpressionLag0010166
SyntenyLag0010166
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGGAGAGTTCAAGCATTTGGTGCTCGTAAAGTTTAAGGAAGGAGCGGCGGTGGGAGAGATTCTCAAAGGAATGGAGAACCTCGTCTCTGAAGTTGAAGCTGTCAAATCCTTTGAATGGTAATCTTTTGCCACTATCGTTAATATATTAAAATTTCAATGTTATTTTTGAAGTATTGGTTTCTTCAGTTTTGTTGGATGCTTTTTAGTGGAGCCAGGAAGGGGAGGACAGTGACCCTTCATCTTAGTTCGTCTTAGATAAAATAAATTATCTAAACAAATTTAAGATTTTATGGTTTTTTTTCAACTTTTTCCTAAATTTATGTAATGTTAGACAGTAAAACTTTGTCCCTCCCTAAGAAATTTTCTAGCACGTCCATGTTAAGACCCAAAATTTAAGTTTTCTGTTTCTTTATTAGTTTTTTAGCAAGATTGCGATATTTATATGGTTGGGATGGACTTTGCGTGACATGATGTTGAATGTTTTATTATTAAATTTTTTTATGTAATTTTGTGATGATTTTTTTTTTTAATTTAGTTTCAAGGATATGTTAAAATTAATCAAAGGGTAAACAAGATTTTCTCATGTAATTTATCATGGAAGGAAGAAGAAAGGTGAATGTTTTGAGGTGTAAACAGGGGGCAGGACATGGAGGGACCAGAGATGCTTACACAGGGCTTCACACATGCCTTCTTGATGACATTCGAGAACAAGGAAGCTCATGCTGCGTTTGTGGGGCATCCCAAGCATGTTGAATTCTCTGCAACTTTCTCGGCAGCCATTGAGAAGATTGTGCTGCTTGATTTCCCAGCTATTCGTGCCAAGCCACCTCCATCAGCTTGA

mRNA sequence

ATGGCAGGAGAGTTCAAGCATTTGGTGCTCGTAAAGTTTAAGGAAGGAGCGGCGGTGGGAGAGATTCTCAAAGGAATGGAGAACCTCGTCTCTGAAGTTGAAGCTGTCAAATCCTTTGAATGGGGGCAGGACATGGAGGGACCAGAGATGCTTACACAGGGCTTCACACATGCCTTCTTGATGACATTCGAGAACAAGGAAGCTCATGCTGCGTTTGTGGGGCATCCCAAGCATGTTGAATTCTCTGCAACTTTCTCGGCAGCCATTGAGAAGATTGTGCTGCTTGATTTCCCAGCTATTCGTGCCAAGCCACCTCCATCAGCTTGA

Coding sequence (CDS)

ATGGCAGGAGAGTTCAAGCATTTGGTGCTCGTAAAGTTTAAGGAAGGAGCGGCGGTGGGAGAGATTCTCAAAGGAATGGAGAACCTCGTCTCTGAAGTTGAAGCTGTCAAATCCTTTGAATGGGGGCAGGACATGGAGGGACCAGAGATGCTTACACAGGGCTTCACACATGCCTTCTTGATGACATTCGAGAACAAGGAAGCTCATGCTGCGTTTGTGGGGCATCCCAAGCATGTTGAATTCTCTGCAACTTTCTCGGCAGCCATTGAGAAGATTGTGCTGCTTGATTTCCCAGCTATTCGTGCCAAGCCACCTCCATCAGCTTGA

Protein sequence

MAGEFKHLVLVKFKEGAAVGEILKGMENLVSEVEAVKSFEWGQDMEGPEMLTQGFTHAFLMTFENKEAHAAFVGHPKHVEFSATFSAAIEKIVLLDFPAIRAKPPPSA
Homology
BLAST of Lag0010166 vs. NCBI nr
Match: XP_022958177.1 (stress-response A/B barrel domain-containing protein At5g22580-like [Cucurbita moschata] >KAG6606003.1 Stress-response A/B barrel domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207.2 bits (526), Expect = 7.0e-50
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0

Query: 1   MAGEFKHLVLVKFKEGAAVGEILKGMENLVSEVEAVKSFEWGQDMEGPEMLTQGFTHAFL 60
           M GEFKHLVLVKFKEGAAVGEILKGMENLV+E+EAVKSFEWGQ+MEGPEMLTQGFTHAFL
Sbjct: 1   MEGEFKHLVLVKFKEGAAVGEILKGMENLVTEIEAVKSFEWGQEMEGPEMLTQGFTHAFL 60

Query: 61  MTFENKEAHAAFVGHPKHVEFSATFSAAIEKIVLLDFPAIRAKPPPSA 109
           MTFENKEAH+AF  HPKHVEFSATFSAAIEKIVLLDFPAIRAKPPPSA
Sbjct: 61  MTFENKEAHSAFTAHPKHVEFSATFSAAIEKIVLLDFPAIRAKPPPSA 108

BLAST of Lag0010166 vs. NCBI nr
Match: XP_022995999.1 (stress-response A/B barrel domain-containing protein At5g22580 [Cucurbita maxima] >XP_023533464.1 stress-response A/B barrel domain-containing protein At5g22580-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.8 bits (525), Expect = 9.1e-50
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0

Query: 1   MAGEFKHLVLVKFKEGAAVGEILKGMENLVSEVEAVKSFEWGQDMEGPEMLTQGFTHAFL 60
           M GEFKHLVLVKFKEGAAVGEILKGMENLV+E+EAVKSFEWGQ+MEGPEMLTQGFTHAFL
Sbjct: 1   MEGEFKHLVLVKFKEGAAVGEILKGMENLVTEIEAVKSFEWGQEMEGPEMLTQGFTHAFL 60

Query: 61  MTFENKEAHAAFVGHPKHVEFSATFSAAIEKIVLLDFPAIRAKPPPSA 109
           MTFENKEAH AF  HPKHVEFSATFSAAIEKIVLLDFPAIRAKPPPSA
Sbjct: 61  MTFENKEAHTAFTAHPKHVEFSATFSAAIEKIVLLDFPAIRAKPPPSA 108

BLAST of Lag0010166 vs. NCBI nr
Match: KAG7035953.1 (Stress-response A/B barrel domain-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 205.7 bits (522), Expect = 2.0e-49
Identity = 100/107 (93.46%), Postives = 104/107 (97.20%), Query Frame = 0

Query: 1   MAGEFKHLVLVKFKEGAAVGEILKGMENLVSEVEAVKSFEWGQDMEGPEMLTQGFTHAFL 60
           M GEFKHLVLVKFKEGAAVGEILKGMENLV+E+EAVKSFEWGQ+MEGPEMLTQGFTHAFL
Sbjct: 1   MEGEFKHLVLVKFKEGAAVGEILKGMENLVTEIEAVKSFEWGQEMEGPEMLTQGFTHAFL 60

Query: 61  MTFENKEAHAAFVGHPKHVEFSATFSAAIEKIVLLDFPAIRAKPPPS 108
           MTFENKEAH+AF  HPKHVEFSATFSAAIEKIVLLDFPAIRAKPPPS
Sbjct: 61  MTFENKEAHSAFTAHPKHVEFSATFSAAIEKIVLLDFPAIRAKPPPS 107

BLAST of Lag0010166 vs. NCBI nr
Match: XP_022986047.1 (stress-response A/B barrel domain-containing protein At5g22580-like [Cucurbita maxima])

HSP 1 Score: 203.8 bits (517), Expect = 7.7e-49
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0

Query: 1   MAGEFKHLVLVKFKEGAAVGEILKGMENLVSEVEAVKSFEWGQDMEGPEMLTQGFTHAFL 60
           M GEFKHLVLVKFKEGAAV EILKGMENLVSEVEAVKSFEWGQ++EGPEMLTQGFTHAFL
Sbjct: 1   MGGEFKHLVLVKFKEGAAVEEILKGMENLVSEVEAVKSFEWGQEIEGPEMLTQGFTHAFL 60

Query: 61  MTFENKEAHAAFVGHPKHVEFSATFSAAIEKIVLLDFPAIRAKPPPSA 109
           MTFENKEAHAAFVGHPKHVEFSATFSAAIEKIVLLDFPAIR KP P+A
Sbjct: 61  MTFENKEAHAAFVGHPKHVEFSATFSAAIEKIVLLDFPAIRTKPAPTA 108

BLAST of Lag0010166 vs. NCBI nr
Match: XP_038901331.1 (stress-response A/B barrel domain-containing protein At5g22580 [Benincasa hispida])

HSP 1 Score: 203.8 bits (517), Expect = 7.7e-49
Identity = 99/105 (94.29%), Postives = 104/105 (99.05%), Query Frame = 0

Query: 1   MAGEFKHLVLVKFKEGAAVGEILKGMENLVSEVEAVKSFEWGQDMEGPEMLTQGFTHAFL 60
           MAGEFKHLVLVKFKEGAAVGEILKGMENLVSEVEAVK+FEWGQ++EGPEMLTQGFTHAFL
Sbjct: 1   MAGEFKHLVLVKFKEGAAVGEILKGMENLVSEVEAVKTFEWGQEIEGPEMLTQGFTHAFL 60

Query: 61  MTFENKEAHAAFVGHPKHVEFSATFSAAIEKIVLLDFPAIRAKPP 106
           MTFENKEAHAAFVGHPKHVEFSATFSAAI+KIV+LDFPAIR KPP
Sbjct: 61  MTFENKEAHAAFVGHPKHVEFSATFSAAIDKIVVLDFPAIRTKPP 105

BLAST of Lag0010166 vs. ExPASy Swiss-Prot
Match: Q9FK81 (Stress-response A/B barrel domain-containing protein At5g22580 OS=Arabidopsis thaliana OX=3702 GN=At5g22580 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.6e-33
Identity = 67/99 (67.68%), Postives = 78/99 (78.79%), Query Frame = 0

Query: 5   FKHLVLVKFKEGAAVGEILKGMENLVSEVEAVKSFEWGQDMEGPEMLTQGFTHAFLMTFE 64
           FKHLV+VKFKE   V EILKG+ENLVS+++ VKSFEWG+D E  +ML QGFTHAF MTFE
Sbjct: 6   FKHLVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFE 65

Query: 65  NKEAHAAFVGHPKHVEFSATFSAAIEKIVLLDFPAIRAK 104
           NK+ + AF  HP HVEFSA F+A I+KIVLLDFP    K
Sbjct: 66  NKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVK 104

BLAST of Lag0010166 vs. ExPASy Swiss-Prot
Match: Q9LUV2 (Stress-response A/B barrel domain-containing protein HS1 OS=Arabidopsis thaliana OX=3702 GN=HS1 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.3e-18
Identity = 42/98 (42.86%), Postives = 68/98 (69.39%), Query Frame = 0

Query: 3   GEFKHLVLVKFKEGAA---VGEILKGMENLVSEVEAVKSFEWGQDMEGPEMLTQGFTHAF 62
           G  KH++L  FK+G +   + E++KG  NLV+ +E +K+F WG+D+   E L QG+TH F
Sbjct: 6   GPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDV-SIENLHQGYTHIF 65

Query: 63  LMTFENKEAHAAFVGHPKHVEFSATFSAAIEKIVLLDF 98
             TFE+KEA A ++ HP HVEF+  F  +++K++++D+
Sbjct: 66  ESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDY 102

BLAST of Lag0010166 vs. ExPASy Swiss-Prot
Match: I6WU39 (Olivetolic acid cyclase OS=Cannabis sativa OX=3483 GN=OAC PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-08
Identity = 32/95 (33.68%), Postives = 54/95 (56.84%), Query Frame = 0

Query: 6  KHLVLVKFKE---GAAVGEILKGMENLVSEVEAVKSFEWGQDMEGPEMLTQGFTHAFLMT 65
          KHL+++KFK+    A   E  K   NLV+ + A+K   WG+D+   +   +G+TH   +T
Sbjct: 4  KHLIVLKFKDEITEAQKEEFFKTYVNLVNIIPAMKDVYWGKDVT-QKNKEEGYTHIVEVT 63

Query: 66 FENKEAHAAFVGHPKHVEFSATFSAAIEKIVLLDF 98
          FE+ E    ++ HP HV F   + +  EK+++ D+
Sbjct: 64 FESVETIQDYIIHPAHVGFGDVYRSFWEKLLIFDY 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022958177.17.0e-5093.52stress-response A/B barrel domain-containing protein At5g22580-like [Cucurbita m... [more]
XP_022995999.19.1e-5093.52stress-response A/B barrel domain-containing protein At5g22580 [Cucurbita maxima... [more]
KAG7035953.12.0e-4993.46Stress-response A/B barrel domain-containing protein [Cucurbita argyrosperma sub... [more]
XP_022986047.17.7e-4993.52stress-response A/B barrel domain-containing protein At5g22580-like [Cucurbita m... [more]
XP_038901331.17.7e-4994.29stress-response A/B barrel domain-containing protein At5g22580 [Benincasa hispid... [more]
Match NameE-valueIdentityDescription
Q9FK813.6e-3367.68Stress-response A/B barrel domain-containing protein At5g22580 OS=Arabidopsis th... [more]
Q9LUV24.3e-1842.86Stress-response A/B barrel domain-containing protein HS1 OS=Arabidopsis thaliana... [more]
I6WU394.0e-0833.68Olivetolic acid cyclase OS=Cannabis sativa OX=3483 GN=OAC PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013097Stress responsive alpha-beta barrelSMARTSM00886Dabb_2coord: 5..99
e-value: 5.3E-22
score: 89.1
IPR013097Stress responsive alpha-beta barrelPFAMPF07876Dabbcoord: 6..98
e-value: 6.3E-24
score: 84.4
IPR013097Stress responsive alpha-beta barrelPROSITEPS51502S_R_A_B_BARRELcoord: 5..97
score: 27.63084
NoneNo IPR availableGENE3D3.30.70.100coord: 2..105
e-value: 4.9E-29
score: 102.7
NoneNo IPR availablePANTHERPTHR33178:SF4EXPRESSED PROTEINcoord: 4..107
IPR044662Stress-response A/B barrel domain-containing protein HS1/DABB1-likePANTHERPTHR33178FAMILY NOT NAMEDcoord: 4..107
IPR011008Dimeric alpha-beta barrelSUPERFAMILY54909Dimeric alpha+beta barrelcoord: 3..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0010166.1Lag0010166.1mRNA