Lag0010122 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0010122
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Cyclin-dependent kinases regulatory subunit
Location	chr9: 44799783 .. 44800698 (-)
RNA-Seq Expression	Lag0010122
Synteny	Lag0010122

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACACTTACGAGTATAGGTATTGTATTCTTGCTCTCTCAGTTCTCAACTCTTTAGTTTCTCGCAGTCTTGGGGGATTGTTTGGAAGTGTTTAATCCTTTCTCTTCAATGGCTAACTGTGTATTGATTGATACAGGCATGTGGTGCTCCCACCCGAAGTGGCAAAGTTGCTTCCCAAGAATCGCCTGCTCTCGGAAGTAAGCAACTTCCTAATTTTGAATTTATGTCTATTGATTTTGTTACAAAGGGAGGTTTTCTTTGATTGTTTTGGAAAAAAAATCGAATCCGATAGTTGCATTTGGAAATCAGGTTTAGGTATCACTATTCTCTATTTTGTATGTCGACCCGAGACTAAGCAAAATAAATGCATCACACTCGAGACTCTGTTGTTAGAAATTGTTATTAAAGCGTGGACAGTTTTTTTCCCCCTTCTTTCTAGTCTTTTTAAGTTTCCATATGATCTTGATATTCTCTGTTTGATTTGGCTGATGGCTGTATGAAAGTTGAACGGTGTTTATGAATATTTCGCATGGAAGATATATCAAATAGGTTTGAGAATCCAGGGCTTAAAACTTTTGCAATCAATGCCTTCTGATTTTGTTGGCTTTCCTTTTGAACTTAAGTGTAATCGTTGTTCTAAGCAAAAGGGTGCTTCCCAAATCTGTTTGAGTGCTCATTTATTGGAATCGTGTTGTTGTACTCTCAACACTTTAATCCTTTGTGCAGAACGAGTGGCGTGCGATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCTATTCATCGTCCCGAGCCGCACATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTCGCTCAACAAAACGTGCTTGCTGCTAAATGA

mRNA sequence

ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACACTTACGAGTATAGGCATGTGGTGCTCCCACCCGAAGTGGCAAAGTTGCTTCCCAAGAATCGCCTGCTCTCGGAAAACGAGTGGCGTGCGATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCTATTCATCGTCCCGAGCCGCACATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTCGCTCAACAAAACGTGCTTGCTGCTAAATGA

Coding sequence (CDS)

ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACACTTACGAGTATAGGCATGTGGTGCTCCCACCCGAAGTGGCAAAGTTGCTTCCCAAGAATCGCCTGCTCTCGGAAAACGAGTGGCGTGCGATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCTATTCATCGTCCCGAGCCGCACATCATGCTATTCAGGAGGCCCCTGAACTACCAACAGCAGCAGGAGAACCTCGCTCAACAAAACGTGCTTGCTGCTAAATGA

Protein sequence

MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNVLAAK

Homology

[Close]

BLAST of Lag0010122 vs. NCBI nr
Match: XP_022957804.1 (cyclin-dependent kinases regulatory subunit 1 [Cucurbita moschata] >XP_022996399.1 cyclin-dependent kinases regulatory subunit 1 [Cucurbita maxima] >XP_023534106.1 cyclin-dependent kinases regulatory subunit 1 isoform X3 [Cucurbita pepo subsp. pepo] >KAG6606027.1 Cyclin-dependent kinases regulatory subunit 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035974.1 Cyclin-dependent kinases regulatory subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187.2 bits (474), Expect = 6.2e-44
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDTYEYRHVVLPP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]

BLAST of Lag0010122 vs. NCBI nr
Match: XP_038902899.1 (cyclin-dependent kinases regulatory subunit 1-like [Benincasa hispida])

HSP 1 Score: 186.0 bits (471), Expect = 1.4e-43
Identity = 88/89 (98.88%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD YEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]

BLAST of Lag0010122 vs. NCBI nr
Match: XP_028756892.1 (cyclin-dependent kinases regulatory subunit 1 [Prosopis alba] >XP_028788395.1 cyclin-dependent kinases regulatory subunit 1 [Prosopis alba])

HSP 1 Score: 183.7 bits (465), Expect = 6.8e-43
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQEN AQQN++AAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQQNMVAAK 89

[Close]

BLAST of Lag0010122 vs. NCBI nr
Match: XP_039002563.1 (cyclin-dependent kinases regulatory subunit 1-like [Hibiscus syriacus] >KAE8733082.1 Cyclin-dependent kinases regulatory subunit 1 [Hibiscus syriacus])

HSP 1 Score: 182.2 bits (461), Expect = 2.0e-42
Identity = 84/87 (96.55%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLA 88
          EPHIMLFRRPLNYQQQQENLAQQN++A
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNMVA 87

[Close]

BLAST of Lag0010122 vs. NCBI nr
Match: XP_022944260.1 (cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_023513375.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182.2 bits (461), Expect = 2.0e-42
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDD +EYRHVVLPP+VAKLLPKNRLLSENEWRA+GVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDIHEYRHVVLPPDVAKLLPKNRLLSENEWRALGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 90
          EPHIMLFRRPLNYQQQQENLAQQNVLAAK
Sbjct: 61 EPHIMLFRRPLNYQQQQENLAQQNVLAAK 89

[Close]

BLAST of Lag0010122 vs. ExPASy Swiss-Prot
Match: O23249 (Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CKS1 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 3.5e-42
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDT+EYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRP
Sbjct: 1  MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLAQ 83
          EPHIMLFRRPLNYQQQQEN AQ
Sbjct: 61 EPHIMLFRRPLNYQQQQENQAQ 82

[Close]

BLAST of Lag0010122 vs. ExPASy Swiss-Prot
Match: A2XCH8 (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=39946 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 6.6e-41
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]

BLAST of Lag0010122 vs. ExPASy Swiss-Prot
Match: Q6PS57 (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 6.6e-41
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQENLA 82
          EPHIMLFRRPLN+QQQQE  A
Sbjct: 61 EPHIMLFRRPLNFQQQQEAAA 81

[Close]

BLAST of Lag0010122 vs. ExPASy Swiss-Prot
Match: Q9SJJ5 (Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CKS2 PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.4e-38
Identity = 71/78 (91.03%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60
          MGQIQYS+KYFDDT+EYRHVVLPPEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRP
Sbjct: 1  MGQIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRP 60

Query: 61 EPHIMLFRRPLNYQQQQE 79
          EPHIMLFRRPLNYQQ+ +
Sbjct: 61 EPHIMLFRRPLNYQQEHQ 78

[Close]

BLAST of Lag0010122 vs. ExPASy Swiss-Prot
Match: P55933 (Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX=5791 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.7e-28
Identity = 53/66 (80.30%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 4  IQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPH 63
          IQYSEKY+DD +EYRHV+LPP+VAK +PKNRLLSE EWR +GVQQS+GWVHYA+HRPEPH
Sbjct: 6  IQYSEKYYDDKFEYRHVILPPDVAKEIPKNRLLSEGEWRGLGVQQSQGWVHYALHRPEPH 65

Query: 64 IMLFRR 70
          I+LFRR
Sbjct: 66 ILLFRR 71

The following BLAST results are available for this feature:

BLAST of Lag0010122 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957804.1	6.2e-44	98.88	cyclin-dependent kinases regulatory subunit 1 [Cucurbita moschata] >XP_022996399...	[more]
XP_038902899.1	1.4e-43	98.88	cyclin-dependent kinases regulatory subunit 1-like [Benincasa hispida]	[more]
XP_028756892.1	6.8e-43	96.63	cyclin-dependent kinases regulatory subunit 1 [Prosopis alba] >XP_028788395.1 cy...	[more]
XP_039002563.1	2.0e-42	96.55	cyclin-dependent kinases regulatory subunit 1-like [Hibiscus syriacus] >KAE87330...	[more]
XP_022944260.1	2.0e-42	95.51	cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_0235...	[more]

BLAST of Lag0010122 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23249	3.5e-42	96.34	Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
A2XCH8	6.6e-41	96.30	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=3...	[more]
Q6PS57	6.6e-41	96.30	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX...	[more]
Q9SJJ5	2.4e-38	91.03	Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
P55933	1.7e-28	80.30	Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000789	Cyclin-dependent kinase, regulatory subunit	PRINTS	PR00296	CYCLINKINASE	coord: 3..17 score: 65.13 coord: 40..54 score: 75.9 coord: 18..32 score: 62.05 coord: 55..69 score: 76.41
IPR000789	Cyclin-dependent kinase, regulatory subunit	SMART	SM01084	CKS_2	coord: 3..72 e-value: 1.0E-47 score: 174.5
IPR000789	Cyclin-dependent kinase, regulatory subunit	PFAM	PF01111	CKS	coord: 4..70 e-value: 5.2E-36 score: 122.7
IPR000789	Cyclin-dependent kinase, regulatory subunit	PROSITE	PS00944	CKS_1	coord: 6..24
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	GENE3D	3.30.170.10		coord: 1..83 e-value: 2.6E-40 score: 138.7
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	SUPERFAMILY	55637	Cell cycle regulatory proteins	coord: 1..83
None	No IPR available	PANTHER	PTHR23415:SF29	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT	coord: 1..86
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0010122.1	Lag0010122.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0045737	positive regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:0007346	regulation of mitotic cell cycle
cellular_component	GO:0000307	cyclin-dependent protein kinase holoenzyme complex
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0061575	cyclin-dependent protein serine/threonine kinase activator activity
molecular_function	GO:0042393	histone binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0019901	protein kinase binding
molecular_function	GO:0043130	ubiquitin binding
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity