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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCGAAATCCGTTGCTTTTTGGACGTTCGTTTCGCTGTTGATGAACGTCGCGGTCTCTTTGGAACAACCAACGGAACTTCCGCCTTCTCCATCCCCTCAATCTGCTGCAGATTCTCCTCCAGTGCCCTCTCCTACTCCATTTTCTCCCGCTCCTGCCACTTCACCGGCTTTGAACTCTCCTCCTGCGCCTCCGCCCTCAGATCTCACTCCCAGTCCATCTCCTGCGCGTGTTCCTTCTCCCTCACCGACTCCTTCCCCTTCACCAACGGCCGACGGCGATTTCAGTAACAGCACTGCCAATGGCGGTGCAGAAGAGTCCGTAGCCTCCAAAGGCGGGATGAACGGAGGCAAGAAGGCTGGAATTGCAGTTGGAGTCATTGCTGCAGTTTGTGTCGTCGGAGTAGGAGGATTCGTGTACAAGAAGCGCCAAGACAACATTCGCCGTTCTCAGTACGGTACTGCTGCTAGGTCATCGTTCCTATGA mRNA sequence ATGGCGAAATCCGTTGCTTTTTGGACGTTCGTTTCGCTGTTGATGAACGTCGCGGTCTCTTTGGAACAACCAACGGAACTTCCGCCTTCTCCATCCCCTCAATCTGCTGCAGATTCTCCTCCAGTGCCCTCTCCTACTCCATTTTCTCCCGCTCCTGCCACTTCACCGGCTTTGAACTCTCCTCCTGCGCCTCCGCCCTCAGATCTCACTCCCAGTCCATCTCCTGCGCGTGTTCCTTCTCCCTCACCGACTCCTTCCCCTTCACCAACGGCCGACGGCGATTTCAGTAACAGCACTGCCAATGGCGGTGCAGAAGAGTCCGTAGCCTCCAAAGGCGGGATGAACGGAGGCAAGAAGGCTGGAATTGCAGTTGGAGTCATTGCTGCAGTTTGTGTCGTCGGAGTAGGAGGATTCGTGTACAAGAAGCGCCAAGACAACATTCGCCGTTCTCAGTACGGTACTGCTGCTAGGTCATCGTTCCTATGA Coding sequence (CDS) ATGGCGAAATCCGTTGCTTTTTGGACGTTCGTTTCGCTGTTGATGAACGTCGCGGTCTCTTTGGAACAACCAACGGAACTTCCGCCTTCTCCATCCCCTCAATCTGCTGCAGATTCTCCTCCAGTGCCCTCTCCTACTCCATTTTCTCCCGCTCCTGCCACTTCACCGGCTTTGAACTCTCCTCCTGCGCCTCCGCCCTCAGATCTCACTCCCAGTCCATCTCCTGCGCGTGTTCCTTCTCCCTCACCGACTCCTTCCCCTTCACCAACGGCCGACGGCGATTTCAGTAACAGCACTGCCAATGGCGGTGCAGAAGAGTCCGTAGCCTCCAAAGGCGGGATGAACGGAGGCAAGAAGGCTGGAATTGCAGTTGGAGTCATTGCTGCAGTTTGTGTCGTCGGAGTAGGAGGATTCGTGTACAAGAAGCGCCAAGACAACATTCGCCGTTCTCAGTACGGTACTGCTGCTAGGTCATCGTTCCTATGA Protein sequence MAKSVAFWTFVSLLMNVAVSLEQPTELPPSPSPQSAADSPPVPSPTPFSPAPATSPALNSPPAPPPSDLTPSPSPARVPSPSPTPSPSPTADGDFSNSTANGGAEESVASKGGMNGGKKAGIAVGVIAAVCVVGVGGFVYKKRQDNIRRSQYGTAARSSFL
Homology
BLAST of Lag0010066 vs. NCBI nr
Match: XP_023534499.1 (alpha carbonic anhydrase 8-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 214.5 bits (545), Expect = 6.5e-52 Identity = 130/168 (77.38%), Postives = 140/168 (83.33%), Query Frame = 0
Query: 1 MAKSVAFW----TFVSLLMNVAVSLEQPTELPPSPSPQSAADSPPVPSPTPFSPAPATSP 60
MAKSVAF+ FV++ M+ A SLEQP E+PPSPSP+SAADSPPVPSPTPF APA+SP
Sbjct: 1 MAKSVAFYCLLLMFVAVFMDAAFSLEQPVEVPPSPSPESAADSPPVPSPTPFPHAPASSP 60
Query: 61 A---LNSPPAPPPSDLTPSPSPARVPSPSPTPSPSPTADGDFSNSTANGGAEESVASKGG 120
A L SPPAPPPSDLTPSPSPARVPSPSP P+PS TAD DF NS ANGG E+ SKGG
Sbjct: 61 AESPLKSPPAPPPSDLTPSPSPARVPSPSPAPAPSLTADSDFRNSIANGGGGETETSKGG 120
Query: 121 MNGGKKAGIAVGVIAAVCVVGVGGFVYKKRQDNIRRSQYGTAARSSFL 162
MNGGKKAGIAVGVIAA C VGVGG VYKKRQDNIRRSQ+G AARSSFL
Sbjct: 121 MNGGKKAGIAVGVIAAACFVGVGGIVYKKRQDNIRRSQFGNAARSSFL 168
BLAST of Lag0010066 vs. NCBI nr
Match: XP_022995398.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita maxima]) HSP 1 Score: 214.2 bits (544), Expect = 8.5e-52 Identity = 130/168 (77.38%), Postives = 140/168 (83.33%), Query Frame = 0
Query: 1 MAKSVAF----WTFVSLLMNVAVSLEQPTELPPSPSPQSAADSPPVPSPTPFSPAPATSP 60
MAKSVAF FV++ M+ A SLEQP E+PPSPSP+SAADSPPVPSPTPF APA+SP
Sbjct: 1 MAKSVAFCCLLLMFVAVFMDAAFSLEQPVEVPPSPSPESAADSPPVPSPTPFPHAPASSP 60
Query: 61 A---LNSPPAPPPSDLTPSPSPARVPSPSPTPSPSPTADGDFSNSTANGGAEESVASKGG 120
A L SPPAPPPSDLTPSPSPARVPSPSP P+PS TAD DF NS ANGG E+ ASKGG
Sbjct: 61 AESPLKSPPAPPPSDLTPSPSPARVPSPSPAPAPSLTADSDFRNSIANGGGGETEASKGG 120
Query: 121 MNGGKKAGIAVGVIAAVCVVGVGGFVYKKRQDNIRRSQYGTAARSSFL 162
MNGGKKAGIAVGVIAA C VG+GG VYKKRQDNIRRSQ+G AARSSFL
Sbjct: 121 MNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQFGNAARSSFL 168
BLAST of Lag0010066 vs. NCBI nr
Match: KAG6605547.1 (hypothetical protein SDJN03_02864, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013894.1 hypothetical protein SDJN02_24063, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 213.0 bits (541), Expect = 1.9e-51 Identity = 130/168 (77.38%), Postives = 139/168 (82.74%), Query Frame = 0
Query: 1 MAKSVAF----WTFVSLLMNVAVSLEQPTELPPSPSPQSAADSPPVPSPTPFSPAPATSP 60
MAKSVAF FV++ M+ A SLEQP E+PPSPSP+SAADSPPVPSPTPF APA+SP
Sbjct: 1 MAKSVAFCCLLLMFVAVFMDAAFSLEQPVEVPPSPSPESAADSPPVPSPTPFPHAPASSP 60
Query: 61 A---LNSPPAPPPSDLTPSPSPARVPSPSPTPSPSPTADGDFSNSTANGGAEESVASKGG 120
A L SPPAPPPSDLTPSPSPARVPSPSP P+PS TAD DF NS ANGG E+ SKGG
Sbjct: 61 AESPLKSPPAPPPSDLTPSPSPARVPSPSPAPAPSLTADSDFRNSIANGGGGETETSKGG 120
Query: 121 MNGGKKAGIAVGVIAAVCVVGVGGFVYKKRQDNIRRSQYGTAARSSFL 162
MNGGKKAGIAVGVIAA C VGVGG VYKKRQDNIRRSQ+G AARSSFL
Sbjct: 121 MNGGKKAGIAVGVIAAACFVGVGGIVYKKRQDNIRRSQFGNAARSSFL 168
BLAST of Lag0010066 vs. NCBI nr
Match: XP_022958106.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita moschata]) HSP 1 Score: 207.6 bits (527), Expect = 8.0e-50 Identity = 128/168 (76.19%), Postives = 137/168 (81.55%), Query Frame = 0
Query: 1 MAKSVAF----WTFVSLLMNVAVSLEQPTELPPSPSPQSAADSPPVPSPTPFSPAPATSP 60
MAKSVAF FV++ M+ A SLEQP E+PPSPSP+SAADSPPVPSPTPF APA+SP
Sbjct: 1 MAKSVAFCCLLLMFVAVFMDAAFSLEQPVEVPPSPSPESAADSPPVPSPTPFPHAPASSP 60
Query: 61 A---LNSPPAPPPSDLTPSPSPARVPSPSPTPSPSPTADGDFSNSTANGGAEESVASKGG 120
A L SPPAPP SDLTP PSPARVPSPSP P+PS TAD DF NS ANGG E+ SKGG
Sbjct: 61 AESPLKSPPAPPRSDLTPCPSPARVPSPSPAPAPSLTADSDFRNSIANGGGGETETSKGG 120
Query: 121 MNGGKKAGIAVGVIAAVCVVGVGGFVYKKRQDNIRRSQYGTAARSSFL 162
MNGGKKAGIAVGVIAA C VGVGG VYKKRQDNIRRSQ+G AARSSFL
Sbjct: 121 MNGGKKAGIAVGVIAAACFVGVGGIVYKKRQDNIRRSQFGNAARSSFL 168
BLAST of Lag0010066 vs. NCBI nr
Match: XP_038901486.1 (early nodulin-20-like isoform X1 [Benincasa hispida]) HSP 1 Score: 195.3 bits (495), Expect = 4.1e-46 Identity = 122/168 (72.62%), Postives = 138/168 (82.14%), Query Frame = 0
Query: 1 MAKSVAF----WTFVSLLMNVAVSLEQPTELPPSPSPQSAADSPPVPSPTPFSPAPATSP 60
MAKS+ F + FVSL +NV+ SLE +LPPSPSP+S +SPP+PSPTPF APA+SP
Sbjct: 1 MAKSIPFCSLLFIFVSLFINVSFSLELSQQLPPSPSPESPENSPPLPSPTPFPHAPASSP 60
Query: 61 A---LNSPPAPPPSDLTPSPSPARVPSPSPTPSPSPTADGDFSNSTANGGAEESVASKGG 120
L+SPPAPPPSDLT SPSP+ PSPSP+PSPSPTAD DFSNST++GG E+S ASKGG
Sbjct: 61 VESPLHSPPAPPPSDLTHSPSPS--PSPSPSPSPSPTADSDFSNSTSSGGGEDSEASKGG 120
Query: 121 MNGGKKAGIAVGVIAAVCVVGVGGFVYKKRQDNIRRSQYGTAARSSFL 162
M GGKKAGIAVGVIAA VG+GGFVYKKRQDNIRRSQYG AARSSFL
Sbjct: 121 MTGGKKAGIAVGVIAAASFVGIGGFVYKKRQDNIRRSQYGNAARSSFL 166
BLAST of Lag0010066 vs. ExPASy Swiss-Prot
Match: Q9FPQ6 (Vegetative cell wall protein gp1 OS=Chlamydomonas reinhardtii OX=3055 GN=GP1 PE=1 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 2.8e-05 Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 0
Query: 24 PTELPPSPSPQSAADSPPVPSPTPFSPAPATSPALNSPPAPPPSDLTPSPSPARVPSPSP 83
P +PPSP+P S A SPP PSP P +P+P+ SP+ + P+P PS +PSPSP+ +PSPSP
Sbjct: 318 PAPVPPSPAPPSPAPSPP-PSPAPPTPSPSPSPSPSPSPSPSPSP-SPSPSPSPIPSPSP 377
Query: 84 TPSPSPTA 92
PSPSP A
Sbjct: 378 KPSPSPVA 383
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_023534499.1 | 6.5e-52 | 77.38 | alpha carbonic anhydrase 8-like [Cucurbita pepo subsp. pepo] | [more] |
| XP_022995398.1 | 8.5e-52 | 77.38 | lysine-rich arabinogalactan protein 18-like [Cucurbita maxima] | [more] |
| KAG6605547.1 | 1.9e-51 | 77.38 | hypothetical protein SDJN03_02864, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022958106.1 | 8.0e-50 | 76.19 | lysine-rich arabinogalactan protein 18-like [Cucurbita moschata] | [more] |
| XP_038901486.1 | 4.1e-46 | 72.62 | early nodulin-20-like isoform X1 [Benincasa hispida] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Q9FPQ6 | 2.8e-05 | 57.35 | Vegetative cell wall protein gp1 OS=Chlamydomonas reinhardtii OX=3055 GN=GP1 PE=... | [more] |
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | PRINTS | PR01217 | PRICHEXTENSN | coord: 36..57
score: 38.18
coord: 60..76
score: 45.88
coord: 77..94
score: 35.56
coord: 22..34
score: 38.46 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 26..88 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 23..115 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 89..105 |
| None | No IPR available | PANTHER | PTHR36721 | PROLINE-RICH FAMILY PROTEIN | coord: 8..161 |
| None | No IPR available | PANTHER | PTHR36721:SF5 | PROTEIN, PUTATIVE-RELATED | coord: 8..161 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
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