Lag0010009 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0010009
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr9: 43916659 .. 43917108 (-)
RNA-Seq Expression	Lag0010009
Synteny	Lag0010009

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCGTCTGCATATCAAACTGCATCAACGACGCTCGAGCCCCCGTCCGTCCCACCTACATAAACCTCTACAAGTGGCCGGAATCCGACGCCGAGTTCATCCGATCCGTCAGCTCCAAACTCAACCGAACCTCGCGCGTCGTCGACAGCATCTCTTGCCGCCAGTTGTATCTCCGAAGCTACACCTTCTCCAGAGAAGACGACAACGTGCCGGAGAACACCAGCAAGTGCTTCGGCAGAGTCGGAATGCGCCAGAAAGTTTCTCGCCGGAGAAAGAAGAAGACGGCGGCGTCGGAGGACGGCGGTGGCGCTGAGAAGGTCAGGAAGTGCTCGACGCTGAAGAAGGCGAAGGAGTTATCGTGCGCCGCCTTGACGTCCGTCTTCCGGCGGTTGCTATCTTGCACCGCGAAAGTCGATGTGGCTGATAATATGAGAGAGGTCCATTAG

mRNA sequence

ATGGCCTCCGTCTGCATATCAAACTGCATCAACGACGCTCGAGCCCCCGTCCGTCCCACCTACATAAACCTCTACAAGTGGCCGGAATCCGACGCCGAGTTCATCCGATCCGTCAGCTCCAAACTCAACCGAACCTCGCGCGTCGTCGACAGCATCTCTTGCCGCCAGTTGTATCTCCGAAGCTACACCTTCTCCAGAGAAGACGACAACGTGCCGGAGAACACCAGCAAGTGCTTCGGCAGAGTCGGAATGCGCCAGAAAGTTTCTCGCCGGAGAAAGAAGAAGACGGCGGCGTCGGAGGACGGCGGTGGCGCTGAGAAGGTCAGGAAGTGCTCGACGCTGAAGAAGGCGAAGGAGTTATCGTGCGCCGCCTTGACGTCCGTCTTCCGGCGGTTGCTATCTTGCACCGCGAAAGTCGATGTGGCTGATAATATGAGAGAGGTCCATTAG

Coding sequence (CDS)

ATGGCCTCCGTCTGCATATCAAACTGCATCAACGACGCTCGAGCCCCCGTCCGTCCCACCTACATAAACCTCTACAAGTGGCCGGAATCCGACGCCGAGTTCATCCGATCCGTCAGCTCCAAACTCAACCGAACCTCGCGCGTCGTCGACAGCATCTCTTGCCGCCAGTTGTATCTCCGAAGCTACACCTTCTCCAGAGAAGACGACAACGTGCCGGAGAACACCAGCAAGTGCTTCGGCAGAGTCGGAATGCGCCAGAAAGTTTCTCGCCGGAGAAAGAAGAAGACGGCGGCGTCGGAGGACGGCGGTGGCGCTGAGAAGGTCAGGAAGTGCTCGACGCTGAAGAAGGCGAAGGAGTTATCGTGCGCCGCCTTGACGTCCGTCTTCCGGCGGTTGCTATCTTGCACCGCGAAAGTCGATGTGGCTGATAATATGAGAGAGGTCCATTAG

Protein sequence

MASVCISNCINDARAPVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQLYLRSYTFSREDDNVPENTSKCFGRVGMRQKVSRRRKKKTAASEDGGGAEKVRKCSTLKKAKELSCAALTSVFRRLLSCTAKVDVADNMREVH

Homology

[Close]

BLAST of Lag0010009 vs. NCBI nr
Match: KAG6605498.1 (hypothetical protein SDJN03_02815, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035437.1 hypothetical protein SDJN02_02233, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260.0 bits (663), Expect = 1.3e-65
Identity = 133/153 (86.93%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MASVCISNCINDARAPVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQLYLR 60
           MASVCISNCINDAR PVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQ+YLR
Sbjct: 1   MASVCISNCINDARVPVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQMYLR 60

Query: 61  SYTFSREDDNVPENTSKCFGRVGMRQKVSRRR----KKKTAASEDGGGAEKVRKCSTLKK 120
           SYTFSRE+DNVPE T+KCFG+VGMRQKVSRRR    KKK A +E+   +EK+RKCSTLKK
Sbjct: 61  SYTFSREEDNVPEKTNKCFGKVGMRQKVSRRRNKKKKKKKAMAEEEDESEKIRKCSTLKK 120

Query: 121 AKELSCAALTSVFRRLLSCTAKVDVADNMREVH 150
           AKELSCAALTSVFRRLLSCTAKVDVADN REVH
Sbjct: 121 AKELSCAALTSVFRRLLSCTAKVDVADNAREVH 153

[Close]

BLAST of Lag0010009 vs. NCBI nr
Match: XP_023532318.1 (uncharacterized protein LOC111794509 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.9 bits (655), Expect = 1.1e-64
Identity = 131/152 (86.18%), Postives = 140/152 (92.11%), Query Frame = 0


Query: 1   MASVCISNCINDARAPVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQLYLR 60
           MASVCISNCINDAR PVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQ+YLR
Sbjct: 1   MASVCISNCINDARVPVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQMYLR 60

Query: 61  SYTFSREDDNVPENTSKCFGRVGMRQKVSRRR---KKKTAASEDGGGAEKVRKCSTLKKA 120
           SYTFSRE+DNV E T+KCFG+VGMRQKVSRRR   KKK A +E+   +EK+RKCSTLKKA
Sbjct: 61  SYTFSREEDNVAEKTNKCFGKVGMRQKVSRRRNKKKKKKAMAEEEDESEKIRKCSTLKKA 120

Query: 121 KELSCAALTSVFRRLLSCTAKVDVADNMREVH 150
           KELSCAALTSVFRRLLSCTAKVDVADN RE+H
Sbjct: 121 KELSCAALTSVFRRLLSCTAKVDVADNAREIH 152

[Close]

BLAST of Lag0010009 vs. NCBI nr
Match: XP_022946966.1 (uncharacterized protein LOC111450987 [Cucurbita moschata])

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-64
Identity = 131/152 (86.18%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MASVCISNCINDARAPVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQLYLR 60
           MASVCISNCINDAR PVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQ+YLR
Sbjct: 1   MASVCISNCINDARVPVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQMYLR 60

Query: 61  SYTFSREDDNVPENTSKCFGRVGMRQKVSRRR---KKKTAASEDGGGAEKVRKCSTLKKA 120
           SYTFSRE+DN+PE T+KCFG+VGMRQKVSRRR   KKK  A  +   +EK+RKCSTLKKA
Sbjct: 61  SYTFSREEDNMPEKTNKCFGKVGMRQKVSRRRNKKKKKKKAMAEEDESEKIRKCSTLKKA 120

Query: 121 KELSCAALTSVFRRLLSCTAKVDVADNMREVH 150
           KELSCAALTSVFRRLLSCTAKVDVADN REVH
Sbjct: 121 KELSCAALTSVFRRLLSCTAKVDVADNAREVH 152

[Close]

BLAST of Lag0010009 vs. NCBI nr
Match: XP_023006939.1 (uncharacterized protein LOC111499579 [Cucurbita maxima])

HSP 1 Score: 252.3 bits (643), Expect = 2.6e-63
Identity = 130/153 (84.97%), Postives = 137/153 (89.54%), Query Frame = 0


Query: 1   MASVCISNCINDARAPVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQLYLR 60
           MASVCISNCINDAR PVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQ+YLR
Sbjct: 1   MASVCISNCINDARVPVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQMYLR 60

Query: 61  SYTFSREDDNVPENTSKCFGRVGMRQKVSRRR----KKKTAASEDGGGAEKVRKCSTLKK 120
           SYTFSRE+DNV E T+KCFG+VGMRQKVS RR    KKK  A  +   +EK+RKCSTLKK
Sbjct: 61  SYTFSREEDNVAEKTNKCFGKVGMRQKVSHRRNKKKKKKKKAMAEEDDSEKIRKCSTLKK 120

Query: 121 AKELSCAALTSVFRRLLSCTAKVDVADNMREVH 150
           AKELSCAALTSVFRRLLSCTAKVDVADN REVH
Sbjct: 121 AKELSCAALTSVFRRLLSCTAKVDVADNAREVH 153

[Close]

BLAST of Lag0010009 vs. NCBI nr
Match: XP_004148240.1 (uncharacterized protein LOC101218723 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 5.8e-63
Identity = 127/150 (84.67%), Postives = 138/150 (92.00%), Query Frame = 0


Query: 1   MASVCISNCINDARAPVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQLYLR 60
           MASVCISNCINDAR PVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQ+YLR
Sbjct: 1   MASVCISNCINDARLPVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQMYLR 60

Query: 61  SYTFSREDDNVPE-NTSKCFGRVGMRQKVSRRRKKKTAASEDGGGAEKVRKCSTLKKAKE 120
           SYTFSRE+++ PE  T+KCF +VGMRQ++SRR+KKKTAASE   G EK+RK S LKKAKE
Sbjct: 61  SYTFSREEEHAPETKTNKCFAKVGMRQRISRRKKKKTAASESSDGDEKIRKSSRLKKAKE 120

Query: 121 LSCAALTSVFRRLLSCTAKVDVADNMREVH 150
           +SCAALTSVFRRLLSCTAKVDVAD MREVH
Sbjct: 121 ISCAALTSVFRRLLSCTAKVDVADTMREVH 150

The following BLAST results are available for this feature:

BLAST of Lag0010009 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605498.1	1.3e-65	86.93	hypothetical protein SDJN03_02815, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023532318.1	1.1e-64	86.18	uncharacterized protein LOC111794509 [Cucurbita pepo subsp. pepo]	[more]
XP_022946966.1	1.8e-64	86.18	uncharacterized protein LOC111450987 [Cucurbita moschata]	[more]
XP_023006939.1	2.6e-63	84.97	uncharacterized protein LOC111499579 [Cucurbita maxima]	[more]
XP_004148240.1	5.8e-63	84.67	uncharacterized protein LOC101218723 [Cucumis sativus]	[more]

BLAST of Lag0010009 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35304	OS05G0120300 PROTEIN-RELATED	coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0010009.1	Lag0010009.1	mRNA