Lag0009986 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0009986
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionHistone H2A
Locationchr9: 43735702 .. 43736243 (+)
RNA-Seq ExpressionLag0009986
SyntenyLag0009986
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCCAGCGGCAAGGCAAAGAAGGGTGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGGCGGTTTCTCGCTCCGTCAAGGCCGGCCTCCAGTTCCCCGTCGGCCGTATCGCTCGTTATCTGAAGAAAGGAAGATACGCTCAGCGTGTCGGCACCGGCGCTCCGGTCTACTTGGCCGCAGTGATGGAGTATCTAGCCGCTGAGGTAACCGAATCGATGTTTTTCTCTTCATCTTCATCCTCATCCACCTCCTTATGACCGCCATTGAATCGATCTTCTGTTAATGCAATCTGCAGGTTCTAGAGTTGGCCGGAAATGCCGCTAGAGACAACAAGAAGAATAGAATCATTCCAAGGCACGTGCTATTGGCGATCAGGAACGACGAAGAACTCGGAAAGTTGCTCGCCGGCGTGACTATTGCGAGCGGCGGTGTTCTTCCGAACATCAACCCGGTTCTGTTGCCGAAGAAGACGGATAAGGCCGTGAAAGAGCCGAAATCTCCATCGAAGGCCGGCAAATCTCCATCGAAGGCGGCTTAA

mRNA sequence

ATGGAGGCCAGCGGCAAGGCAAAGAAGGGTGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGGCGGTTTCTCGCTCCGTCAAGGCCGGCCTCCAGTTCCCCGTCGGCCGTATCGCTCGTTATCTGAAGAAAGGAAGATACGCTCAGCGTGTCGGCACCGGCGCTCCGGTCTACTTGGCCGCAGTGATGGAGTATCTAGCCGCTGAGGTTCTAGAGTTGGCCGGAAATGCCGCTAGAGACAACAAGAAGAATAGAATCATTCCAAGGCACGTGCTATTGGCGATCAGGAACGACGAAGAACTCGGAAAGTTGCTCGCCGGCGTGACTATTGCGAGCGGCGGTGTTCTTCCGAACATCAACCCGGTTCTGTTGCCGAAGAAGACGGATAAGGCCGTGAAAGAGCCGAAATCTCCATCGAAGGCCGGCAAATCTCCATCGAAGGCGGCTTAA

Coding sequence (CDS)

ATGGAGGCCAGCGGCAAGGCAAAGAAGGGTGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGGCGGTTTCTCGCTCCGTCAAGGCCGGCCTCCAGTTCCCCGTCGGCCGTATCGCTCGTTATCTGAAGAAAGGAAGATACGCTCAGCGTGTCGGCACCGGCGCTCCGGTCTACTTGGCCGCAGTGATGGAGTATCTAGCCGCTGAGGTTCTAGAGTTGGCCGGAAATGCCGCTAGAGACAACAAGAAGAATAGAATCATTCCAAGGCACGTGCTATTGGCGATCAGGAACGACGAAGAACTCGGAAAGTTGCTCGCCGGCGTGACTATTGCGAGCGGCGGTGTTCTTCCGAACATCAACCCGGTTCTGTTGCCGAAGAAGACGGATAAGGCCGTGAAAGAGCCGAAATCTCCATCGAAGGCCGGCAAATCTCCATCGAAGGCGGCTTAA

Protein sequence

MEASGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINPVLLPKKTDKAVKEPKSPSKAGKSPSKAA
Homology
[Close]
BLAST of Lag0009986 vs. NCBI nr
Match: XP_022943937.1 (histone H2A [Cucurbita moschata] >XP_023512023.1 histone H2A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271.9 bits (694), Expect = 3.2e-69
Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MEASGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           MEASGKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAVKEPKSPSKAGKSPSKAA 150
           PVLLPKKTDKA+KEPKSPSKAGKSPSKAA
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKAA 149

[Close]
BLAST of Lag0009986 vs. NCBI nr
Match: XP_022986957.1 (histone H2A [Cucurbita maxima])

HSP 1 Score: 270.4 bits (690), Expect = 9.3e-69
Identity = 145/149 (97.32%), Postives = 148/149 (99.33%), Query Frame = 0 

Query: 1   MEASGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           MEASGKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAVKEPKSPSKAGKSPSKAA 150
           PVLLPKKTDKA+KEPKSPSKAGKSPSK A
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKVA 149

[Close]
BLAST of Lag0009986 vs. NCBI nr
Match: XP_008448380.1 (PREDICTED: histone H2A [Cucumis melo])

HSP 1 Score: 269.2 bits (687), Expect = 2.1e-68
Identity = 145/149 (97.32%), Postives = 145/149 (97.32%), Query Frame = 0 

Query: 1   MEASGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME  GKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAVKEPKSPSKAGKSPSKAA 150
           PVLLPKKTDK  KEPKSPSKAGKSPSKAA
Sbjct: 121 PVLLPKKTDKGTKEPKSPSKAGKSPSKAA 149

[Close]
BLAST of Lag0009986 vs. NCBI nr
Match: XP_023006960.1 (histone H2A-like [Cucurbita maxima])

HSP 1 Score: 266.5 bits (680), Expect = 1.3e-67
Identity = 142/149 (95.30%), Postives = 147/149 (98.66%), Query Frame = 0 

Query: 1   MEASGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           MEAS KAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAVKEPKSPSKAGKSPSKAA 150
           P+LLPKKTDKAVKEPKSPSK GKSPSK++
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKSS 149

[Close]
BLAST of Lag0009986 vs. NCBI nr
Match: XP_022947502.1 (histone H2A-like [Cucurbita moschata] >KAG6605479.1 hypothetical protein SDJN03_02796, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035421.1 hypothetical protein SDJN02_02217 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265.0 bits (676), Expect = 3.9e-67
Identity = 141/149 (94.63%), Postives = 146/149 (97.99%), Query Frame = 0 

Query: 1   MEASGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME S KAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKAVKEPKSPSKAGKSPSKAA 150
           P+LLPKKTDKAVKEPKSPSK GKSPSK++
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKSS 149

[Close]
BLAST of Lag0009986 vs. ExPASy Swiss-Prot
Match: P19177 (Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.7e-63
Identity = 130/149 (87.25%), Postives = 139/149 (93.29%), Query Frame = 0 

Query: 1   MEASGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME +GKAKKG GGR+GG +KK+V+RSVKAGLQFPVGRI RYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   METAGKAKKGFGGRKGGPRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AV+EYLAAEVLELAGNAARDNKK RIIPRH+LLA+RNDEELGKLLAGVT A GGVLPNIN
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNIN 120

Query: 121 PVLLPKKT-DKAVKEPKSPSKAGKSPSKA 149
           PVLLPKKT +KA KEPKSPSKAGKSP KA
Sbjct: 121 PVLLPKKTAEKAAKEPKSPSKAGKSPKKA 149

[Close]
BLAST of Lag0009986 vs. ExPASy Swiss-Prot
Match: Q2HU68 (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.3e-61
Identity = 125/148 (84.46%), Postives = 135/148 (91.22%), Query Frame = 0 

Query: 1   MEASGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           M+AS K KKGAGGR+GG +KK+V+RS +AGLQFPVGRI RYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   MDASTKTKKGAGGRKGGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNIN
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNIN 120

Query: 121 PVLLPKKTDKAVKEPKSPSKAGKSPSKA 149
           P+LLPKK +KA    KSPSKA KSP KA
Sbjct: 121 PILLPKKNEKAATTTKSPSKATKSPKKA 148

[Close]
BLAST of Lag0009986 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.1e-59
Identity = 128/153 (83.66%), Postives = 140/153 (91.50%), Query Frame = 0 

Query: 1   MEASGKAKKGAGGRR-GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYL 60
           M+AS K KKGAGGR+ GG +KK+V+RS++AGLQFPVGRI RYLKKGRYAQRVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNI 120
           AAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKTDKA---VKEPKSPS-KAGKSPSKA 149
           NPVLLPKKT+++    KEPKSP  KAGKSP KA
Sbjct: 121 NPVLLPKKTERSNTVSKEPKSPKPKAGKSPKKA 153

[Close]
BLAST of Lag0009986 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 9.0e-59
Identity = 127/153 (83.01%), Postives = 135/153 (88.24%), Query Frame = 0 

Query: 1   MEASGKAKKGAGGRR-GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYL 60
           M+   K KKGAG R+ GG KKK VSRSVKAGLQFPVGRI R+LKKGRYAQRVG+GAPVYL
Sbjct: 1   MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 60

Query: 61  AAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNI 120
           AAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKTDK----AVKEPKSPSKAGKSPSKA 149
           NPVLLPKK +K    A KEPKSP+KA KSP KA
Sbjct: 121 NPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

[Close]
BLAST of Lag0009986 vs. ExPASy Swiss-Prot
Match: P40281 (Histone H2A.2 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.2e-58
Identity = 123/149 (82.55%), Postives = 135/149 (90.60%), Query Frame = 0 

Query: 1   MEASGKAKKGAGGRR-GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYL 60
           M+AS K KKGAGGR+ GG +KKAV+RSV+AGLQFPVGRI R+LKKGRYAQRVGTGAPVYL
Sbjct: 1   MDASTKVKKGAGGRKGGGPRKKAVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNI 120
           AAV+EYLAAEVLELAGNAARDNKKNRI PRH+LLA+RND ELGKLLAGVTIA GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDVELGKLLAGVTIAYGGVLPNI 120

Query: 121 NPVLLPKKTDKAVKEPKSPSKAGKSPSKA 149
           NPVLLPK+T+ A   PKSPSKA K+P KA
Sbjct: 121 NPVLLPKRTESAASAPKSPSKAKKTPKKA 149

The following BLAST results are available for this feature:
BLAST of Lag0009986 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022943937.13.2e-6997.99histone H2A [Cucurbita moschata] >XP_023512023.1 histone H2A [Cucurbita pepo sub... [more]
XP_022986957.19.3e-6997.32histone H2A [Cucurbita maxima][more]
XP_008448380.12.1e-6897.32PREDICTED: histone H2A [Cucumis melo][more]
XP_023006960.11.3e-6795.30histone H2A-like [Cucurbita maxima][more]
XP_022947502.13.9e-6794.63histone H2A-like [Cucurbita moschata] >KAG6605479.1 hypothetical protein SDJN03_... [more]
BLAST of Lag0009986 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P191772.7e-6387.25Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1[more]
Q2HU683.3e-6184.46Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 P... [more]
Q2HU651.1e-5983.66Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P... [more]
Q9M5319.0e-5983.01Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1[more]
P402811.2e-5882.55Histone H2A.2 OS=Pisum sativum OX=3888 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 50..65
score: 81.37
coord: 65..78
score: 89.46
coord: 21..43
score: 71.22
coord: 79..93
score: 73.78
coord: 107..125
score: 76.19
IPR002119Histone H2ASMARTSM00414h2a4coord: 10..130
e-value: 2.0E-79
score: 279.9
IPR002119Histone H2ACDDcd00074H2Acoord: 19..127
e-value: 1.14137E-66
score: 196.402
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 16..96
e-value: 1.0E-13
score: 51.8
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 8..137
e-value: 2.0E-64
score: 217.2
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 24..127
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 99..132
e-value: 9.0E-19
score: 67.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..149
NoneNo IPR availablePANTHERPTHR23430:SF304HISTONE H2Acoord: 8..143
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 8..143
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 29..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0009986.1Lag0009986.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031507 heterochromatin assembly
cellular_component GO:0000775 chromosome, centromeric region
cellular_component GO:0000792 heterochromatin
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity