Lag0009983 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0009983
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Histone H2B
Location	chr9: 43720131 .. 43720589 (-)
RNA-Seq Expression	Lag0009983
Synteny	Lag0009983

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCAAAGGCTGAGAAGAAACCCGCCGAGAAGAAGCCGGCTTCCGAGAAGCCAGCCGAGGAGAAGAAGTCCGTCGCCGAGAAAGCTCCGGCGGAGAAGAAGCCCAAGGCTGGGAAGAAGCTCCCGAAGGAAGGCGGCGCTGCTGCTGGAGACAAGAAGAAGAAGAGAACGAAGAAGAGCGTGGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCAGACATCGGGATCTCCAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGATATCTTCGAGAAGCTCGCTCAGGAGTCATCTAAGTTGGCTCGCTACAACAAGAAACCCACCATCACTTCGCGGGAGATCCAGACCGCCGTCAGGCTTGTTCTTCCCGGTGAGTTGGCCAAGCACGCTGTTTCTGAGGGCACAAAGGCGGTTACTAAGTTCACAAGTTCTTAA

mRNA sequence

ATGGCACCAAAGGCTGAGAAGAAACCCGCCGAGAAGAAGCCGGCTTCCGAGAAGCCAGCCGAGGAGAAGAAGTCCGTCGCCGAGAAAGCTCCGGCGGAGAAGAAGCCCAAGGCTGGGAAGAAGCTCCCGAAGGAAGGCGGCGCTGCTGCTGGAGACAAGAAGAAGAAGAGAACGAAGAAGAGCGTGGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCAGACATCGGGATCTCCAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGATATCTTCGAGAAGCTCGCTCAGGAGTCATCTAAGTTGGCTCGCTACAACAAGAAACCCACCATCACTTCGCGGGAGATCCAGACCGCCGTCAGGCTTGTTCTTCCCGGTGAGTTGGCCAAGCACGCTGTTTCTGAGGGCACAAAGGCGGTTACTAAGTTCACAAGTTCTTAA

Coding sequence (CDS)

ATGGCACCAAAGGCTGAGAAGAAACCCGCCGAGAAGAAGCCGGCTTCCGAGAAGCCAGCCGAGGAGAAGAAGTCCGTCGCCGAGAAAGCTCCGGCGGAGAAGAAGCCCAAGGCTGGGAAGAAGCTCCCGAAGGAAGGCGGCGCTGCTGCTGGAGACAAGAAGAAGAAGAGAACGAAGAAGAGCGTGGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCAGACATCGGGATCTCCAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGATATCTTCGAGAAGCTCGCTCAGGAGTCATCTAAGTTGGCTCGCTACAACAAGAAACCCACCATCACTTCGCGGGAGATCCAGACCGCCGTCAGGCTTGTTCTTCCCGGTGAGTTGGCCAAGCACGCTGTTTCTGAGGGCACAAAGGCGGTTACTAAGTTCACAAGTTCTTAA

Protein sequence

MAPKAEKKPAEKKPASEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

[Close]

BLAST of Lag0009983 vs. NCBI nr
Match: XP_004143093.1 (histone H2B [Cucumis sativus] >KGN47176.1 hypothetical protein Csa_020799 [Cucumis sativus])

HSP 1 Score: 269.2 bits (687), Expect = 2.1e-68
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKA+KKPAEKKPASEKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK
Sbjct: 1   MAPKADKKPAEKKPASEKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Lag0009983 vs. NCBI nr
Match: XP_028052986.1 (histone H2B-like [Camellia sinensis])

HSP 1 Score: 267.7 bits (683), Expect = 6.1e-68
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKAEKKPAEKKPASEKPAEEKK+VAEK PAEKKPKAGKKLPKEGGAAAGDKKKKRTKK
Sbjct: 1   MAPKAEKKPAEKKPASEKPAEEKKTVAEKTPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Lag0009983 vs. NCBI nr
Match: XP_038900415.1 (histone H2B [Benincasa hispida])

HSP 1 Score: 266.9 bits (681), Expect = 1.0e-67
Identity = 148/152 (97.37%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPK++KKPAEKKPAS+KPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK
Sbjct: 1   MAPKSDKKPAEKKPASDKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Lag0009983 vs. NCBI nr
Match: XP_015874056.1 (histone H2B-like [Ziziphus jujuba])

HSP 1 Score: 266.5 bits (680), Expect = 1.4e-67
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKAEKKPAEKKPASEKPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK
Sbjct: 1   MAPKAEKKPAEKKPASEKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           S ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSR
Sbjct: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Lag0009983 vs. NCBI nr
Match: XP_008448382.1 (PREDICTED: histone H2B [Cucumis melo] >KAA0061943.1 histone H2B [Cucumis melo var. makuwa] >TYK23986.1 histone H2B [Cucumis melo var. makuwa])

HSP 1 Score: 265.8 bits (678), Expect = 2.3e-67
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKA+KKPAEKKPAS+KPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKR KK
Sbjct: 1   MAPKADKKPAEKKPASDKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRMKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of Lag0009983 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 252.3 bits (643), Expect = 3.5e-66
Identity = 143/152 (94.08%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKAEKKPAEK     KPAEEKK+VAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKR KK
Sbjct: 1   MAPKAEKKPAEK-----KPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Lag0009983 vs. ExPASy Swiss-Prot
Match: Q1S9I9 (Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 247.7 bits (631), Expect = 8.6e-65
Identity = 140/152 (92.11%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPK EKKPAEKKPA EK    K +VAEKAPAEKKPKAGKKLPKEGG+AAG+KKKKR+KK
Sbjct: 1   MAPKGEKKPAEKKPAEEK----KSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Lag0009983 vs. ExPASy Swiss-Prot
Match: P40283 (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 246.1 bits (627), Expect = 2.5e-64
Identity = 143/152 (94.08%), Postives = 144/152 (94.74%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPKAEKKPAEKKPASEKP EE KS AEKAPAEKKPKAGKKLPKE G A GDKKKK  KK
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAG-AGGDKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Lag0009983 vs. ExPASy Swiss-Prot
Match: Q1SWQ1 (Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-63
Identity = 138/152 (90.79%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAPK EKKPAEKKPA EK    K +VAEKAPAEKKPKAGKKLPKEGG+AAG+KKKKR+KK
Sbjct: 1   MAPKGEKKPAEKKPAEEK----KSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QESS+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 148

[Close]

BLAST of Lag0009983 vs. ExPASy Swiss-Prot
Match: O23629 (Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3)

HSP 1 Score: 243.0 bits (619), Expect = 2.1e-63
Identity = 141/152 (92.76%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASEKPAEEKKSVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60
           MAP+AEKKPAEKKPA+EKP EE KS AEKAPAEKKPKAGKKLPKE G A GDKKKK  KK
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAG-AGGDKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

The following BLAST results are available for this feature:

BLAST of Lag0009983 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143093.1	2.1e-68	98.68	histone H2B [Cucumis sativus] >KGN47176.1 hypothetical protein Csa_020799 [Cucum...	[more]
XP_028052986.1	6.1e-68	98.03	histone H2B-like [Camellia sinensis]	[more]
XP_038900415.1	1.0e-67	97.37	histone H2B [Benincasa hispida]	[more]
XP_015874056.1	1.4e-67	97.37	histone H2B-like [Ziziphus jujuba]	[more]
XP_008448382.1	2.3e-67	97.37	PREDICTED: histone H2B [Cucumis melo] >KAA0061943.1 histone H2B [Cucumis melo va...	[more]

BLAST of Lag0009983 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22582	3.5e-66	94.08	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
Q1S9I9	8.6e-65	92.11	Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
P40283	2.5e-64	94.08	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]
Q1SWQ1	1.2e-63	90.79	Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
O23629	2.1e-63	92.76	Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 65..83 score: 80.55 coord: 84..104 score: 75.74 coord: 106..123 score: 76.51 coord: 123..136 score: 92.45 coord: 136..149 score: 92.65
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 55..151 e-value: 4.0E-73 score: 258.9
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 10..152
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 120..142
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 10..128 e-value: 2.6E-23 score: 82.8
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 24..152 e-value: 2.8E-60 score: 203.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 36..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	PANTHER	PTHR23428:SF282	HISTONE H2B	coord: 10..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0009983.1	Lag0009983.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity