Lag0009943 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0009943
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Small polypeptide DEVIL 13
Location	chr9: 43471253 .. 43471615 (-)
RNA-Seq Expression	Lag0009943
Synteny	Lag0009943

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAAAATGGAAGCTTTCCAAAAAAGAATCCGCTTCTTCATCAAGTAGCCACACCCACCACCACCACCATTCTTCTTCTTCTTCTTCCAAATCCTTCTTCTCCAGAAGCGCTTCCACCAGAAGCACTTCCTCCAAATTGCCACTGCTCCGAAGCTTATCCCACAAGCACACTCCTTCCTCCTCCGCCGCCGCCGCCGCCGCCAAGTCCCCCTCCGATCTCCGCCGCAGCTCCTCCCAAAAAAACTCCTCCATTGGCCACAAGTGCAGCAGCTTGGCCAAAGAGCAAAAGGCCAGATTTTACATCATGCGCCGATGCGTCGCAATGCTCGTTTGCTGGCATAAACACGGCGATCCATGA

mRNA sequence

ATGGAAGAAAAATGGAAGCTTTCCAAAAAAGAATCCGCTTCTTCATCAAGTAGCCACACCCACCACCACCACCATTCTTCTTCTTCTTCTTCCAAATCCTTCTTCTCCAGAAGCGCTTCCACCAGAAGCACTTCCTCCAAATTGCCACTGCTCCGAAGCTTATCCCACAAGCACACTCCTTCCTCCTCCGCCGCCGCCGCCGCCGCCAAGTCCCCCTCCGATCTCCGCCGCAGCTCCTCCCAAAAAAACTCCTCCATTGGCCACAAGTGCAGCAGCTTGGCCAAAGAGCAAAAGGCCAGATTTTACATCATGCGCCGATGCGTCGCAATGCTCGTTTGCTGGCATAAACACGGCGATCCATGA

Coding sequence (CDS)

ATGGAAGAAAAATGGAAGCTTTCCAAAAAAGAATCCGCTTCTTCATCAAGTAGCCACACCCACCACCACCACCATTCTTCTTCTTCTTCTTCCAAATCCTTCTTCTCCAGAAGCGCTTCCACCAGAAGCACTTCCTCCAAATTGCCACTGCTCCGAAGCTTATCCCACAAGCACACTCCTTCCTCCTCCGCCGCCGCCGCCGCCGCCAAGTCCCCCTCCGATCTCCGCCGCAGCTCCTCCCAAAAAAACTCCTCCATTGGCCACAAGTGCAGCAGCTTGGCCAAAGAGCAAAAGGCCAGATTTTACATCATGCGCCGATGCGTCGCAATGCTCGTTTGCTGGCATAAACACGGCGATCCATGA

Protein sequence

MEEKWKLSKKESASSSSSHTHHHHHSSSSSSKSFFSRSASTRSTSSKLPLLRSLSHKHTPSSSAAAAAAKSPSDLRRSSSQKNSSIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP

Homology

[Close]

BLAST of Lag0009943 vs. NCBI nr
Match: XP_022148450.1 (probable basic-leucine zipper transcription factor L [Momordica charantia])

HSP 1 Score: 176.8 bits (447), Expect = 1.1e-40
Identity = 104/128 (81.25%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 1   MEEKWKLSKKE---SASSSSSHTHHHHH-----SSSSSSKSFFSRSASTRSTSSKLPLLR 60
           MEEKWKLSKKE   +A++++S +HHHHH     SS SSS SFFSRSASTRSTSSKLPLLR
Sbjct: 1   MEEKWKLSKKEAAAAAAAAASSSHHHHHYSRSNSSKSSSSSFFSRSASTRSTSSKLPLLR 60

Query: 61  SLSHKHTPSSSAAAAAAKSPSDLRRSSSQKNSSIGHKCSSLAKEQKARFYIMRRCVAMLV 120
           SLSHKH+ S+SAAAAA    SDLRRSSSQKNSSIGHKCSSLAKEQKARFYIMRRCVAMLV
Sbjct: 61  SLSHKHSASTSAAAAAKSPTSDLRRSSSQKNSSIGHKCSSLAKEQKARFYIMRRCVAMLV 120

[Close]

BLAST of Lag0009943 vs. NCBI nr
Match: XP_038902131.1 (putative protein TPRXL [Benincasa hispida])

HSP 1 Score: 172.6 bits (436), Expect = 2.1e-39
Identity = 106/123 (86.18%), Postives = 109/123 (88.62%), Query Frame = 0


Query: 1   MEEKWKLSKKESASSSSSHTHHHHHSSSSSSKSFFSRSASTRSTSSKLPLLRSLSHKHTP 60
           MEEKWKLSKKESASSS         SSSS+SKSFFSRS STRSTSSKLPLLRSLS KHTP
Sbjct: 1   MEEKWKLSKKESASSS---------SSSSTSKSFFSRSGSTRSTSSKLPLLRSLSQKHTP 60

Query: 61  SSSAAAAAA-KSPSDLRRSSSQKN--SSIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKH 120
           SSSAA+AAA KSP+DLRRSSSQKN  SSIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKH
Sbjct: 61  SSSAASAAAGKSPTDLRRSSSQKNSSSSIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKH 114

[Close]

BLAST of Lag0009943 vs. NCBI nr
Match: XP_022944407.1 (putative protein TPRXL [Cucurbita moschata])

HSP 1 Score: 165.2 bits (417), Expect = 3.4e-37
Identity = 102/126 (80.95%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 1   MEEKWKLSKKESASSSSSHTHHHHHSSSSSSKSFFSRSASTRSTSSKLPLLRSLSHKHTP 60
           MEEKWKLSKKES             SSSSSSKSFFSRS STRSTSSKLPLLRSLS KHTP
Sbjct: 1   MEEKWKLSKKESGC-----------SSSSSSKSFFSRSGSTRSTSSKLPLLRSLSQKHTP 60

Query: 61  SSSAAAAAA---KSPSDLRRSSSQKN---SSIGHKCSSLAKEQKARFYIMRRCVAMLVCW 120
           SSS+++AAA   KSPSDLRRSSSQKN   SSIGHKCSSLAKEQKARFYIMRRCVAMLVCW
Sbjct: 61  SSSSSSAAATSGKSPSDLRRSSSQKNASSSSIGHKCSSLAKEQKARFYIMRRCVAMLVCW 115

[Close]

BLAST of Lag0009943 vs. NCBI nr
Match: XP_023512028.1 (putative protein TPRXL [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.1 bits (414), Expect = 7.5e-37
Identity = 102/129 (79.07%), Postives = 105/129 (81.40%), Query Frame = 0


Query: 1   MEEKWKLSKKESASSSSSHTHHHHHSSSSSSKSFFSRSASTRSTSSKLPLLRSLSHKHTP 60
           MEEKWKLSKKES             SSSSSSKSFFSRS STRSTSSKLPLLRSLS KHTP
Sbjct: 1   MEEKWKLSKKESGC-----------SSSSSSKSFFSRSGSTRSTSSKLPLLRSLSQKHTP 60

Query: 61  SSSAAAAAA------KSPSDLRRSSSQKN---SSIGHKCSSLAKEQKARFYIMRRCVAML 120
           SSS+++AAA      KSPSDLRRSSSQKN   SSIGHKCSSLAKEQKARFYIMRRCVAML
Sbjct: 61  SSSSSSAAATAATSGKSPSDLRRSSSQKNSSSSSIGHKCSSLAKEQKARFYIMRRCVAML 118

[Close]

BLAST of Lag0009943 vs. NCBI nr
Match: XP_022986968.1 (uncharacterized protein LOC111484546 [Cucurbita maxima])

HSP 1 Score: 163.7 bits (413), Expect = 9.9e-37
Identity = 102/127 (80.31%), Postives = 102/127 (80.31%), Query Frame = 0


Query: 1   MEEKWKLSKKESASSSSSHTHHHHHSSSSSSKSFFSRSASTRSTSSKLPLLRSLSHKHTP 60
           MEEKWKLSKKES               SSSSKSFFSRS STRSTSSKLPLLRSLS KHTP
Sbjct: 1   MEEKWKLSKKES-------------GCSSSSKSFFSRSGSTRSTSSKLPLLRSLSQKHTP 60

Query: 61  SSSAAAAAA----KSPSDLRRSSSQKN---SSIGHKCSSLAKEQKARFYIMRRCVAMLVC 120
           SSSAAAA A    KSPSDLRRSSSQKN   SSIGHKCSSLAKEQKARFYIMRRCVAMLVC
Sbjct: 61  SSSAAAATAATSGKSPSDLRRSSSQKNSSSSSIGHKCSSLAKEQKARFYIMRRCVAMLVC 114

[Close]

BLAST of Lag0009943 vs. ExPASy Swiss-Prot
Match: Q8L7D0 (Small polypeptide DEVIL 13 OS=Arabidopsis thaliana OX=3702 GN=DVL13 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-20
Identity = 74/126 (58.73%), Postives = 89/126 (70.63%), Query Frame = 0


Query: 1   MEEKWKLSKKESASSSSSHTHHHHHSSSSSSKSFFSRSASTRSTSSKLPL-LRSLSHK-H 60
           MEEKWKLSKK++             +SSSSSKS FSRS ST ++S+K P+ +RS S K  
Sbjct: 1   MEEKWKLSKKDTT------------ASSSSSKSKFSRSFSTSASSTKSPIFVRSSSTKCS 60

Query: 61  TPSSSAAAAAAKSPS-----DLRRSSSQKNSSIGHKCSSLAKEQKARFYIMRRCVAMLVC 120
            PSSS++++++ S S       RRSSS  +SSI  K SSLAKEQKARFYIMRRCVAMLVC
Sbjct: 61  VPSSSSSSSSSSSISRSFSRKERRSSSSSSSSITQKYSSLAKEQKARFYIMRRCVAMLVC 114

[Close]

BLAST of Lag0009943 vs. ExPASy Swiss-Prot
Match: Q6IM92 (Small polypeptide DEVIL 9 OS=Arabidopsis thaliana OX=3702 GN=DVL9 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.9e-17
Identity = 65/118 (55.08%), Postives = 84/118 (71.19%), Query Frame = 0


Query: 1   MEEKWKLSKKESASSSSSHTHHHHHSSSSSSKSFFSRSASTRSTSSKLP-LLRSLSHKHT 60
           M+EKW+LSKK++ ++S S       SSS+SSKS FSRS ST ++SSK P  +RS S K +
Sbjct: 1   MDEKWRLSKKDALAASCS-------SSSTSSKSKFSRSFSTSASSSKAPAFVRSSSTKCS 60

Query: 61  PSSSAAAAAAKSPSDLRRSSSQKNSSIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKH 118
             SS++++ ++S      SS ++  SI  K SSLAKEQK RFYIMRRCVAMLVCWHKH
Sbjct: 61  VPSSSSSSISRS------SSKKEKGSITQKYSSLAKEQKGRFYIMRRCVAMLVCWHKH 105

[Close]

BLAST of Lag0009943 vs. ExPASy Swiss-Prot
Match: Q8LE84 (Small polypeptide DEVIL 18 OS=Arabidopsis thaliana OX=3702 GN=DVL18 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.2e-10
Identity = 62/137 (45.26%), Postives = 78/137 (56.93%), Query Frame = 0


Query: 2   EEKWKLSKKESA------SSSSSHTHHHH-HSSSSSSKSFFSRSASTRST--SSKLPLL- 61
           E  WK+ KK+S       SS    T      +SSSSSK  F+RS ST+ T  SS  P+  
Sbjct: 4   ENLWKVVKKDSIFETTHFSSKPVFTRSFSTKTSSSSSKPVFTRSFSTKPTSYSSSEPIFR 63

Query: 62  RSLSHKHTPSSS---AAAAAAKSPSD--------LRRSSSQKNSSIGHKCSSLAKEQKAR 118
           RS S K T S S   + + + K P D        + RS SQK +S+  KC ++AKE K+R
Sbjct: 64  RSFSAKPTSSKSPFLSRSGSTKCPVDTSSTSKCSISRSLSQKGASVTRKCRNMAKEHKSR 123

[Close]

BLAST of Lag0009943 vs. ExPASy Swiss-Prot
Match: Q6IM86 (Small polypeptide DEVIL 15 OS=Arabidopsis thaliana OX=3702 GN=DVL15 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-08
Identity = 60/141 (42.55%), Postives = 80/141 (56.74%), Query Frame = 0


Query: 1   MEEKWKLSKKESA------SSSS----SHTHHHHHSSSSSSKSFFSRSASTR----STSS 60
           +E+ W  +KK+S       SSSS    + +     SSS SSKS F+RS ST+    S+SS
Sbjct: 3   VEKLWNHTKKDSIFQTTHFSSSSKPFFTRSFSTKTSSSPSSKSHFTRSFSTKPSSSSSSS 62

Query: 61  KLPLLRSLSHKHTPSSS---AAAAAAKSPSDLRRSS-------SQKNSSIGHKCSSLAKE 118
            L   RS S K   S S   + + + KS +DL   S       S+K +S+  KC  +AKE
Sbjct: 63  DLIFRRSFSAKPKTSKSLLLSRSCSTKSSADLSSKSSSLSRILSKKGASVTGKCFKVAKE 122

[Close]

BLAST of Lag0009943 vs. ExPASy Swiss-Prot
Match: A0A5S6RB44 (Small polypeptide ROTUNDIFOLIA LIKE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RTFL3 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-04
Identity = 48/130 (36.92%), Postives = 73/130 (56.15%), Query Frame = 0


Query: 2   EEKWKLS----KKESASSSSSHTHHHHHSS--SSSSKSFFSRSASTRSTSSKLPLLRSLS 61
           +E+WKLS    + +S  S SS +++++HSS  +SS+ +  SRS S   T+S+        
Sbjct: 3   DERWKLSSSKGRSKSGRSCSSSSNYYYHSSDFNSSNATTLSRSYSASVTASR-------- 62

Query: 62  HKHTPSSSAAA----AAAKSPSDLRRSSSQKNSS----IGHKCSSLAKEQKARFYIMRRC 118
           H  T  S+A A    A++ S S  +    Q+ S+    +  KC    KE +ARFYI+RRC
Sbjct: 63  HATTAWSAAGAGGGGASSSSSSQHQHQQQQQQSNNSQRLSKKCVEAVKEHRARFYIVRRC 122

The following BLAST results are available for this feature:

BLAST of Lag0009943 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148450.1	1.1e-40	81.25	probable basic-leucine zipper transcription factor L [Momordica charantia]	[more]
XP_038902131.1	2.1e-39	86.18	putative protein TPRXL [Benincasa hispida]	[more]
XP_022944407.1	3.4e-37	80.95	putative protein TPRXL [Cucurbita moschata]	[more]
XP_023512028.1	7.5e-37	79.07	putative protein TPRXL [Cucurbita pepo subsp. pepo]	[more]
XP_022986968.1	9.9e-37	80.31	uncharacterized protein LOC111484546 [Cucurbita maxima]	[more]

BLAST of Lag0009943 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L7D0	1.0e-20	58.73	Small polypeptide DEVIL 13 OS=Arabidopsis thaliana OX=3702 GN=DVL13 PE=3 SV=1	[more]
Q6IM92	6.9e-17	55.08	Small polypeptide DEVIL 9 OS=Arabidopsis thaliana OX=3702 GN=DVL9 PE=1 SV=1	[more]
Q8LE84	8.2e-10	45.26	Small polypeptide DEVIL 18 OS=Arabidopsis thaliana OX=3702 GN=DVL18 PE=2 SV=1	[more]
Q6IM86	3.4e-08	42.55	Small polypeptide DEVIL 15 OS=Arabidopsis thaliana OX=3702 GN=DVL15 PE=2 SV=1	[more]
A0A5S6RB44	1.3e-04	36.92	Small polypeptide ROTUNDIFOLIA LIKE 3 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 95..113 e-value: 3.1E-12 score: 46.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	PANTHER	PTHR47596:SF2	DVL13	coord: 1..119
None	No IPR available	PANTHER	PTHR47596	DVL13	coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0009943.1	Lag0009943.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008285	negative regulation of cell population proliferation
biological_process	GO:0048367	shoot system development
cellular_component	GO:0005886	plasma membrane