Lag0009896 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0009896
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr9: 43172233 .. 43176635 (-)
RNA-Seq ExpressionLag0009896
SyntenyLag0009896
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTATGGAAGCTATTAAGATGGGCCTAACGAGTTCAGGTAATGCAAGCCTATCACAAGTCAGTAAGGTTGGAATGCAACCTGAAGACCCTTCCCCCTTGCGTGAAAGGCAAAGAAGTCTGTAGGGCTATGACTGTCTCCCTACCTGAATTTGAAATAACAAAGGATTTCTTTCCCCTGGAACTCGAAAGCATGGATGTGATACTTGGGATGCAGTGGCTCTGAACCATGGGGTTCATGGGGGTAGATTGGTCGGCCTTGACCATGACATTTGGCAAGAACCAGACCAAGGGTTCTTGGATGAGTTAAGGTGCCTACCGATTGATGAAGAGGCCAAGAAAGGGAAGGAAAAGGAACTTGAAACAAAATATGTGATTCCACATGAAGTTAGAAAGCTCCTGGAAGATTATGAAGATGTCTTCAACCTATTGCCAGGCTTACGCCCCAGAGGGCCGTTGCAGGGACTTTCCTTAGGAGAAAGTATCCAAACTCATAGCTCACAAGAGTTTGAAGTATTTCTTTGGGCAAAAGAGCTCAACTTAGGGTAATCGAAGTTCTTAGAATTGGTAGAGAATTGTGGCCGTGAAATCATTTTTTCACTATGACAGGACAATTGTGATATGAACTAAGGTAGAGGACAACAAGCGTGACATTTTTTGAGAAAAGTTGAGAATAAAGGACCTATAATTTCATGGAGAATGTTTGGAAAAGGAAGAACTTGTAGCGTCAAGTTTTTAAAGAGAACGTTTGGAGAAGGAAAATTTGTTGGAGAAAAGTTGGGATGAAACTTTGAAATGGAAAATTTGTGGAAAAAAATTGGAAAGATAGGATCATGAATTTTAAAGGGAACGTTTGTAAAAGGAGAAGTTTTGGGAGAAAAGTCGGGAAGAAATGATCACTATTTCAAAGAAAACGTTAGACTTCCATGGTTGCTTTATCTTGTAGTAGCTAGACTTAGAATGCTCCTTTAGCCGATTAGATAGCTTACTTGGTGGTGTGTTTATTGTTTGCTAGTAGGAGTAGGATGCTCCCATAGTTCGTTAGATAGCATGTTCTGATCTTATGCTTGTTGTTTGCTAGTAAGCATAGGATGTTGCCATAGTTACTTAGATAGCCCGTGCGTGTTTTGTTTGTGCTTGTTGTATGTTAGAAGGTTTAGATTGTTACGTTAGAGCTAAGGTGGGATCTTTCTTTACCTTGGAAGGTTAGTAAGTTGACTTAAGATTCTAGCAAGAGAGCCCAAGATCTTAAGGATCAAGAAATTTCCATAGGAATTAGTGGAGTTGGTAGACTTTCTATGCGAGCAAGACCCATGGAGAAGGTAGTTAAGTTGGAATACGCAAGAGTTCGGCATATCGTGGGTGTGAAATGGTTGGTTTTTATTATGAAAACATAGGATGGTCTAAAAAGGTTGGAAAGTTGGAAATCTAAAGATAGCCTTTGTCCCGAAGGTCAAGTATCTTTTTCAGCTCGGTGCCTGAGCATACTTTGAAAGTATTATGGACTTATGTTTAGAGTTGTCACTTGAGATTACTCCATTACCTAAGCATCCTATTGAATGTATTCCGTTGAAAGAAGGAACTCAAGGTGTAGTTATAAGGACATTGGACAGGGATTATTTCCCAAGTGTGTCACCTCCCCAGTTTTGTTCGTACGAAAAAGAACGGTTCAAAAAGCTTTGCAGTGGCCATTGGAATTAGAACAATGTGGCAATTAAAGCAAATATGCTCTTCCTTGCATTGGTGATGTTTGACCAATTTGCATGAGCAAAGGTTCAAGGTTAGGTTTGTGATGGGGTTTGCCATCTGTTACAACTCAAGAAAGTGAGTGTCACAAGCTTATCATGATGTCTTTTGGACTTGTTGATTCTCATGTAGCTTTTATGGATCTTATGAAGCTAGTCTTTAAAGCCTTTTGACTTGTTCATGGTAGTGTGCCTTGATGACGTATTGGGTTATTCCAAGACTAAGGAATCTCTTAAGGAATGCCTTGAGCAAGTTTTGGCAACCTTGAAAGGTAGTAGGTTGTACTTTATTCAAAGGATGAGTTTTGTTTGGATAATGTTGCTTTCTCGAACATTTGGATTCGAAGGACAGTGTCCCGATGGACCTCACGAAAGTAAAACAATATGTAATTGGTTAAAACCCAATATAGTGATTGTGATTCACAATCTCCTTGGATTGAAAAGTTACCTTAAGAGAGTTAACCTTAAGAGAGTTTTTGAGTTTACTTAGAATCTTGCCAGTTGGTAGTACCATGGATTAAGTTAAATTGCAAGGTTTAAGAATACCTCTATCACTCAAAGTAAAGTTTGTAGGATGAGTTCTAGAAGTTAAAGGAATGACGAATACGGTCTCAACGTTGACTATTCATGGTTGTTCGTGAGGTTGGCACTCGTCAATGATGCTTCAGCAAAAAGGACAAGGTTTAAACTTGTGCAATATGGAAAAGTTATTGTTTACACCTTTTATCAGCTAAGGAGACATGAGTTTCACTAGCACACTCATGACTTGGAACTCGCAGTTGCAGTATTGACTTTACATAGTTGGAGGACTTTCCATATGAGAAAGTATCCATACTCATAGCTTACAAGAGTTTGAAGTATTTCTTTGGGCAAAAGAGCTCAACTTAGGGTAAACGAAGTTCTTGGAATTGGTAGAGAATTGTGGCTGTGAAATCATTTTCACTATGACAGGACAATTGTGATATGAACTAAGCAAGAGGACAACAAGTGTGACATTCTTGGAGAAGAGTTGGGAATAAAGGACCTATAATTTCAGAGAGAATGTTCGGAAAAGAAAAACTTGGAGGAAATGTTTGGAAGAAACGACCAATAATTTCAAAGAGAACGTTTGGAAAAGAAAATTTGTTGGAGAAAAGTTGGGATGAAACTTTGAAATGGAAAATTTGTGGAGAAAAATTGGAAAGAAAGGATCAAGAATTTTAAAGGGAACGTTTGTAAAAGGAGAAGTTTTGGGTGAAAAGTCTGGAAGAAATGATCACTATTTCAAAGAAAACGTTTGACTTCCATGGTTGCTTTATCTTGTAGTAGCTAGACTTAGGATGCTCCCTTTAGCCGATTAGATAGCTTACTTGGTTGTGTGTTTATTGTTTGCTAGGAGTAGGATGCTCCCATAGTTCGTTAGATAGCATGTTCTGATGTTATGCTTGTTGTTTGCTAGAAGGCATAGGATGTTGCCATAGTTTCTTAGATAGCCTGTGTTTTTTGTTTGTGCTTGTTGTGTGTTAACAAGTTTAGATTGTTACCTTAGAGTTTAAGGTGAGATCTTTCTTTACCTTGGAAGGTTAGTAAGTTGGCTTAAGATTCTAGCAAGAGAGTCCAAGACCTTAAGGAATCAAGAAATTTCCATAGGAATTAGTTGTGTTGGTGGACTTTCTATGCAAGCAAGACCTATGGAGCAAGGTTGTTATGTTGGAATCTGCAAGAGTTCGGCATATCGTGGGTGTGAATTGGTTGGTTTTTTATTATGAAAACATGGGATGGTCTAAGAAGGCAGTTCACTTTAGGTTACCATTTGGCCAAAGTTCAAGGCTCAAGGGAATGAAAGTTGGAAATCTAAAGATAGCCTTTGTCCGAAGGTCAAGTGTCTTTTTCAGCTTGGTGCTTGTTCATACTTTTAAAGTATTATGGACTTATGTTTAGAGTTGTCACTTGAGATAACTTCATTACCTAAGGCATCCTATTGAATGTCTCCAGTTGAAATTAAGGAACTCAAGGTGTAGTTGTAAGGACATTGGACGAGAGATTATTCTCCCCAGTGTGTCACCTCCCCAGTTTTGTTGAATAGGAAAAAAGAACGGTTCAAAAAGCTTTGCAATGACCATTGGGATTAGAACAATGTGACAATGAAAGGCAAATATCCTCTTCCTTGACCAATTTGAAACCTCAAGGAAGTGAGCGTCACAAGCTTATCATGAAGTCTTTTGGACTTACTGATTCTCATGTAGCTTTTATGGATCTTATGAAGCTAGTCTTCAGAGGCTTTTGACTTGTTCATGGTAGTGTGCATTGATGACGTATTGGGTTATTCTAAGACTAAGGAATCTCTTAAGGAATGCCTTGAGCAAGTTTTGGCAACCTTGAAAGGTAATAGGTGGTACTTTATTCAAAGGATGAGTTTTCTTTGGATAAGGTTGCTTTCTCGAACATTTGGATTCTAAGGACAGTGTCCCGGTGGACCTCACGAAAGTAAAAACAATTTGTAATTGGTTAAAACCCAATATAGTGCCTATGATTCACAATCTCGTTGGATTGAAAAGTTACCTTAGAGAGTTCTGGAGTTTATTTAAAGTAACGTTTGTAGGAAAGTTCAAGAAAAAGGACAAGGTTGTAAACTTGTGCAATATGGAAAAGTTGTTCTTTACACCTTGCATCGGCTAA

mRNA sequence

ATGGTTATGGAAGCTATTAAGATGGGCCTAACGAGTTCAGGTAATGCAAGCCTATCACAAGTCAGTAAGGTTGGAATGCAACCTGAAGACCCTTCCCCCTTGCGTGAAAGGCAAAGAATGGCTCTGAACCATGGGGTTCATGGGGGTAGATTGGTCGGCCTTGACCATGACATTTGGCAAGAACCAGACCAAGGGTTCTTGGATGAGTTAAGGTGCCTACCGATTGATGAAGAGGCCAAGAAAGGGAAGGAAAAGGAACTTGAAACAAAATATGTGATTCCACATGAAGTTAGAAAGCTCCTGGAAGATTATGAAGATGTCTTCAACCTATTGCCAGGCTTACGCCCCAGAGGGCCGTTGCAGGGACTTTCCTTAGGAGAAAGTATCCAAACTCATAGCTCACAAGAGTTTGAAGTATTTCTTTGGGCAAAAGAGCTCAACTTAGGCAAGAGAGCCCAAGATCTTAAGGATCAAGAAATTTCCATAGGAATTAGTGGAGTTGGTAGACTTTCTATGCGAGCAAGACCCATGGAGAAGGTAGTTAAGTTGGAATACGCAAGAGTTCGGCATATCGTGGAGTTGTCACTTGAGATTACTCCATTACCTAAGCATCCTATTGAATGTATTCCGTTGAAAGAAGGAACTCAAGGTGTAGTTATAAGGACATTGGACAGGGATTATTTCCCAATGTGCCTTGATGACGTATTGGGTTATTCCAAGACTAAGGAATCTCTTAAGGAATGCCTTGAGCAAGTTTTGGCAACCTTGAAAGGTGAGATCTTTCTTTACCTTGGAAGGTTAGTAAGTTGGCTTAAGATTCTAGCAAGAGAGTCCAAGACCTTAAGGAATCAAGAAATTTCCATAGGAATTAGTTGTGTTGGTGGACTTTCTATGCAAGCAAGACCTATGGAGCAAGGTTGTTATGTTGGAATCTGCAAGAGTTCGGCATATCGTGGGTGTGAATTGTCTTCAGAGGCTTTTGACTTGTTCATGGTAGTGTGCATTGATGACGTATTGGGTTATTCTAAGACTAAGGAATCTCTTAAGGAATGCCTTGAGCAAGTTTTGGCAACCTTGAAAGGAAAGTTCAAGAAAAAGGACAAGGTTGTAAACTTGTGCAATATGGAAAAGTTGTTCTTTACACCTTGCATCGGCTAA

Coding sequence (CDS)

ATGGTTATGGAAGCTATTAAGATGGGCCTAACGAGTTCAGGTAATGCAAGCCTATCACAAGTCAGTAAGGTTGGAATGCAACCTGAAGACCCTTCCCCCTTGCGTGAAAGGCAAAGAATGGCTCTGAACCATGGGGTTCATGGGGGTAGATTGGTCGGCCTTGACCATGACATTTGGCAAGAACCAGACCAAGGGTTCTTGGATGAGTTAAGGTGCCTACCGATTGATGAAGAGGCCAAGAAAGGGAAGGAAAAGGAACTTGAAACAAAATATGTGATTCCACATGAAGTTAGAAAGCTCCTGGAAGATTATGAAGATGTCTTCAACCTATTGCCAGGCTTACGCCCCAGAGGGCCGTTGCAGGGACTTTCCTTAGGAGAAAGTATCCAAACTCATAGCTCACAAGAGTTTGAAGTATTTCTTTGGGCAAAAGAGCTCAACTTAGGCAAGAGAGCCCAAGATCTTAAGGATCAAGAAATTTCCATAGGAATTAGTGGAGTTGGTAGACTTTCTATGCGAGCAAGACCCATGGAGAAGGTAGTTAAGTTGGAATACGCAAGAGTTCGGCATATCGTGGAGTTGTCACTTGAGATTACTCCATTACCTAAGCATCCTATTGAATGTATTCCGTTGAAAGAAGGAACTCAAGGTGTAGTTATAAGGACATTGGACAGGGATTATTTCCCAATGTGCCTTGATGACGTATTGGGTTATTCCAAGACTAAGGAATCTCTTAAGGAATGCCTTGAGCAAGTTTTGGCAACCTTGAAAGGTGAGATCTTTCTTTACCTTGGAAGGTTAGTAAGTTGGCTTAAGATTCTAGCAAGAGAGTCCAAGACCTTAAGGAATCAAGAAATTTCCATAGGAATTAGTTGTGTTGGTGGACTTTCTATGCAAGCAAGACCTATGGAGCAAGGTTGTTATGTTGGAATCTGCAAGAGTTCGGCATATCGTGGGTGTGAATTGTCTTCAGAGGCTTTTGACTTGTTCATGGTAGTGTGCATTGATGACGTATTGGGTTATTCTAAGACTAAGGAATCTCTTAAGGAATGCCTTGAGCAAGTTTTGGCAACCTTGAAAGGAAAGTTCAAGAAAAAGGACAAGGTTGTAAACTTGTGCAATATGGAAAAGTTGTTCTTTACACCTTGCATCGGCTAA

Protein sequence

MVMEAIKMGLTSSGNASLSQVSKVGMQPEDPSPLRERQRMALNHGVHGGRLVGLDHDIWQEPDQGFLDELRCLPIDEEAKKGKEKELETKYVIPHEVRKLLEDYEDVFNLLPGLRPRGPLQGLSLGESIQTHSSQEFEVFLWAKELNLGKRAQDLKDQEISIGISGVGRLSMRARPMEKVVKLEYARVRHIVELSLEITPLPKHPIECIPLKEGTQGVVIRTLDRDYFPMCLDDVLGYSKTKESLKECLEQVLATLKGEIFLYLGRLVSWLKILARESKTLRNQEISIGISCVGGLSMQARPMEQGCYVGICKSSAYRGCELSSEAFDLFMVVCIDDVLGYSKTKESLKECLEQVLATLKGKFKKKDKVVNLCNMEKLFFTPCIG
Homology
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BLAST of Lag0009896 vs. NCBI nr
Match: GEZ46937.1 (putative reverse transcriptase domain-containing protein [Tanacetum cinerariifolium])

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-04
Identity = 44/145 (30.34%), Postives = 71/145 (48.97%), Query Frame = 0 

Query: 232 LDDVLGYSKTKESLKECLEQVLATLKGE-IFLYLGRLVSWLKILARESKTLRNQEISIG- 291
           +DD+L YSK+KE  KE L+ +L  LK E ++    +   WL+ +      + ++ + +  
Sbjct: 262 IDDILIYSKSKEEHKEHLKTILELLKREQLYAKFSKCDFWLESVQFLRYVIDSKGVHVDP 321

Query: 292 --ISCVGGLSMQARPMEQGCYVGICKSSAYRGCELSSEAFDLFMVVCIDDVLGYSKTKES 351
             I+ +   +    P E   ++G+     Y          D F++V IDD+L YSK+KE 
Sbjct: 322 AKIAAIKNWATPITPTEVRKFLGLAXCKPY---------LDKFVIVFIDDILIYSKSKEE 381

Query: 352 LKECLEQVLATLK-----GKFKKKD 368
            KE L+ +L  LK      KF K D
Sbjct: 382 HKEHLKTILELLKREQLYAKFSKCD 397

The following BLAST results are available for this feature:
BLAST of Lag0009896 vs. NCBI nr
Match NameE-valueIdentityDescription
GEZ46937.12.4e-0430.34putative reverse transcriptase domain-containing protein [Tanacetum cinerariifol... [more]
BLAST of Lag0009896 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0009896 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0009896 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0009896.1Lag0009896.1mRNA