Lag0009773 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0009773
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr9: 42208710 .. 42211971 (-)
RNA-Seq Expression	Lag0009773
Synteny	Lag0009773

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAAGTCAACAAGCAGAACGATGGGAAGCAAGAAAGTAAGAGCAAGAGGGGAGTTAGAGAAAAGAGAGTAGTGTTTAGGGGTAGAATTCGGGCCCCCTTCTTCAGTGGCGAAGAGGAGTATAAATATCTGCTCGTCCGTTTTTAGGAATTCGAAGGCGTTTCGAGACAAACCAGGCGAAACCGGGGCAGCCAAAGGCGGTGGGGACCAAACGGAGCCCATGGTCGAGGCCGAGCAGGGGATCGGGCCAAACGCCCGACCCCTTCAGTCTTGGCCCGTTCCACTTGCCGGTTTCGCCTCTTGGGTCCATCTCTCAATCCGATTTCTGCCCGGTTGTCCTCGCCAGTTCCTTGTGCATCGGGGTGGTCCAAAATCACCTATAACAAAACCAAAAGCTTACATCCTATTTAGTAACTATTTTGTGTAGGTTTTTTTTTTTCCTCTCTCTCTTCAAAGTTAAACTTATAAACATTAGTGTTATAGTTTTCTTATTGCTTCTTTGTAAGCAAGGGTCTTGTCCTGCCACAAGCGCTAATTGTGGAAGTCGATGCCCTCGCAGTTATTAATCTCCTAACCGAGGAAGACGAAGACCTGTCGAAAATAAAAAATTTCTATGCGGAAATTGCCATTTTGGCGAAGAGGCTTGGCAGTGTTTCTTTTGTTCATTGCTATCGATCCGAAAATGCATTGGCGCACTGGGTAGGGTAGGCCAGGATCGTTCTTCTGATTTGGAAGAAGAAGTGGTATTTTTTTGGGATTCTGATGTACCCTTTTGGTTATCCTTCATTATTAGAGAGGAGGTGGTTGTATCTGTTTCCTCGCGTTTAATAAGTTTTCCGTTTTTTTTATAAAAAAAACATGTTTAAAAAATCGAAGTCAAATTTCGAAAACAAATAAAAAAATAGTTTGTAAAAACTTGATTTAGTTTTTTTTTCAGTTTTTTTTTTTTTTTTTTTTGAAAAAAAAACTTGATTTTGTTTTTAATGACCTGAATTCTTTATTGTGACGAGCAGGTTTTAAAATGGTATAAGCCATTATACGTATTATTTAGGACAAAGGTAGACAAATATTGAAAGTATAAAACCAAAATGTTTCCAAAAAAATCTTTAAAAAAAGTTTAAAACAAAAAATGAATCTAAAATTTCTTTTTCAAACTTAAAAAACAAGTGTTGTGGAAGAGTTGCTTCGTGATAGAGAAACAACACAGAGATAGAAGAGTTCAATTAATTTAAGCAAGCTGTGCTAAAAAGGCACCGCACTAGTGGATTCATTTACATAGCTTTGGGTTTAAAATTAAGGGAAAAACATACTTTGGTCCCTGAAGTTTGTGTTAAGTGACACTTTGGTCTCCGAGTTTTCAAACTCAACAAAAATACCCCCGAGGTTTGAGATAAGAAGCAATTTGGTCCATACCGTCAATTTTTCTGTTAAACCCTAACGGCAGCTTACCATTAATTTTTTTTTTATATTTTTTATTTTAAAAAAAATTAAAAATTAATTTTTTTTAATTAAAATAATAGTGTCACGTCAGCTTACCGTTAGAGTTTAACAGAAAAATTGACGGCAGGGACCAAATTGCTCCTTATCTCAAACCTCGGAGGTATTTTTGTTGAGTTTGAAAACTCGGAGACCAAAGTGTCACTTAACCCAAACCTCAGGGACCAAAAGTGTATTTTTCCCTAAAATTAAATAATTAATTGCAAAAACAAATATAGTGTTTTTTGTTTTTTTGTTTTTTGACAATACGAGAGTGGGAGATTTGAACCACAAACATGGTGGTTATTACTTTCAAAAACCAATATAGTTAGGAAAAAACAAAGTAGTTGGTGTATATTTAGTCTCTAAACTTAAAAAAATATTTAATATGTTAATGAACTTTTAATTTTATGTCTAATAGGCCTATGAACCTTAAAAATGGCTAACAAGTTTTAAACCTTTAATTTTGTGTTTAATTAGTCCTTGATATATTAATAAAAATTAATTTTCAATTAACCTATGGGATATAAAATTGAATTTTATGTTTGATGAACTTTAAACATTATGTTGTGGGTGATTCTGGACCACTAAAAAATCCAAGGACTAAGCAGGACAGCGTAGCACCAACATGAAAGCTTGACCAGGAAGTGGACCCCGGAGGAGAGCGAGCCGAAGGGATTGGGCCGTCTTGGCCCAATCCCATGGGTCGAGGCCGACTTGTGGGCCGAGTTCCCTCCCCTTCATTCGATCTCTGGTGTCTCTAGTCGCCTCAGTTCCACCTGGTTTAGCCCGAATCGCCTTCAAACGCCTAAAAACCCTAGAGGAGGAACATGTATTTAAACCCTTATTTGTCACTGAAGAAGAGGATCCCAAAACTCATTCCCTGAACTTTCTCCTCTTATCTTGCTCTTTTGCTCTTCTCCTTCAGCTTTCTGACTTAAGCATCGGAGGCAGTGACAAGTACCACACCGGTGTGCAGGTCTTCCCTCCTCTCATACAAAATTTACAGTTGGTGGCACGTGAAGGTCAGTTCCTCATGTCCATATTTTGCCATCAACACATTCAATTTTGTGTCTAGTAGGTCAATAGATTTTAAAAAATGACAAATAAGTCAATTGCTTACTATACATAAAATAGAAATTTACCGATCTGATAAAGACAAAATTGAAAGTTTAAAGATATATCCGACACTTTTTAAAATTCAAGGACCCAATAAAAAAATATAAAAATTTAAGAACTCATTAGACACTTTTTAAATTTTAGAGACCAAATGACACAAACCTAAATATTCAACAAGCGAACTTATAATTTAATAAACCAATATATATTGCTTCATATTGTAGGGTTCTTTCTACACATCAATATTAAAATATTGGTAACTTTCTTTTTTTTTTTTTAATCTTTCTCCTTTTTAATTGTTAACATTTTAACAATGTGTGTATGAAAAATAAAATTATTACGATAGGTAATGAAGTATTGTTGATATATATTAATCTAAATTTATTTGGATAAAAACAAACAAAATTGATTTGGACCGTGTTCGGTATTTAAATAAACCAATGACGTGTAAGTCTTGTCTGGCACAAGGAGCGCCATTGTCTGAGCGTGCTTGTCTCAATGCCACGTGGCGGTACATGCACATGGAAAAGGACAACGGCAGCAACAGTTCAAAGCGGTGCGTTTTAGTCGTTCTCAAAAGTCTCGCCGATTATTCATTAATTGCACACCATACCGTGTACTACAAGCTGTCGCTGAGGTGGCAGACAAGTCATCTTCAAGTCTAG

mRNA sequence

ATGTTTAAGTCAACAAGCAGAACGATGGGAAGCAAGAAAGAATTCGAAGGCGTTTCGAGACAAACCAGGCGAAACCGGGGCAGCCAAAGGCGGTGGGGACCAAACGGAGCCCATGGTCGAGGCCGAGCAGGGGATCGGGCCAAACGCCCGACCCCTTCAGTCTTGGCCCGTTCCACTTGCCGGTTTCGCCTCTTGGGTCCATCTCTCAATCCGATTTCTGCCCGGTTGTCCTCGCCAGTTCCTTGTGCATCGGGGTGGTCCAAAATCACCTATAACAAAACCAAAAGCTTACATCCTATTTACAAGGGTCTTGTCCTGCCACAAGCGCTAATTGTGGAAGTCGATGCCCTCGCAGTTATTAATCTCCTAACCGAGGAAGACGAAGACCTGTCGAAAATAAAAAATTTCTATGCGGAAATTGCCATTTTGGCGAAGAGGCTTGGCAGTGTTTCTTTTGTTCATTGCTATCGATCCGAAAATGCATTGGCGCACTGGGTAGGTGGACCCCGGAGGAGAGCGAGCCGAAGGGATTGGGCCGTCTTGGCCCAATCCCATGGGTCGAGGCCGACTTGTGGGCCGAGTTCCCTCCCCTTCATTCGATCTCTGGTGTCTCTAGTCGCCTCAGTTCCACCTGGTTTAGCCCGAATCGCCTTCAAACGCCTAAAAACCCTAGAGGAGGAACATGTATTTAAACCCTTATTTGTCACTGAAGAAGAGGATCCCAAAACTCATTCCCTGAACTTTCTCCTCTTATCTTGCTCTTTTGCTCTTCTCCTTCAGCTTTCTGACTTAAGCATCGGAGGCAGTGACAAGTACCACACCGGTGTGCAGGTCTTCCCTCCTCTCATACAAAATTTACAGTTGGTGGCACGTGAAGGAGCGCCATTGTCTGAGCGTGCTTGTCTCAATGCCACGTGGCGGTACATGCACATGGAAAAGGACAACGGCAGCAACAGTTCAAAGCGGTGCGTTTTAGTCGTTCTCAAAAGTCTCGCCGATTATTCATTAATTGCACACCATACCGTGTACTACAAGCTGTCGCTGAGGTGGCAGACAAGTCATCTTCAAGTCTAG

Coding sequence (CDS)

ATGTTTAAGTCAACAAGCAGAACGATGGGAAGCAAGAAAGAATTCGAAGGCGTTTCGAGACAAACCAGGCGAAACCGGGGCAGCCAAAGGCGGTGGGGACCAAACGGAGCCCATGGTCGAGGCCGAGCAGGGGATCGGGCCAAACGCCCGACCCCTTCAGTCTTGGCCCGTTCCACTTGCCGGTTTCGCCTCTTGGGTCCATCTCTCAATCCGATTTCTGCCCGGTTGTCCTCGCCAGTTCCTTGTGCATCGGGGTGGTCCAAAATCACCTATAACAAAACCAAAAGCTTACATCCTATTTACAAGGGTCTTGTCCTGCCACAAGCGCTAATTGTGGAAGTCGATGCCCTCGCAGTTATTAATCTCCTAACCGAGGAAGACGAAGACCTGTCGAAAATAAAAAATTTCTATGCGGAAATTGCCATTTTGGCGAAGAGGCTTGGCAGTGTTTCTTTTGTTCATTGCTATCGATCCGAAAATGCATTGGCGCACTGGGTAGGTGGACCCCGGAGGAGAGCGAGCCGAAGGGATTGGGCCGTCTTGGCCCAATCCCATGGGTCGAGGCCGACTTGTGGGCCGAGTTCCCTCCCCTTCATTCGATCTCTGGTGTCTCTAGTCGCCTCAGTTCCACCTGGTTTAGCCCGAATCGCCTTCAAACGCCTAAAAACCCTAGAGGAGGAACATGTATTTAAACCCTTATTTGTCACTGAAGAAGAGGATCCCAAAACTCATTCCCTGAACTTTCTCCTCTTATCTTGCTCTTTTGCTCTTCTCCTTCAGCTTTCTGACTTAAGCATCGGAGGCAGTGACAAGTACCACACCGGTGTGCAGGTCTTCCCTCCTCTCATACAAAATTTACAGTTGGTGGCACGTGAAGGAGCGCCATTGTCTGAGCGTGCTTGTCTCAATGCCACGTGGCGGTACATGCACATGGAAAAGGACAACGGCAGCAACAGTTCAAAGCGGTGCGTTTTAGTCGTTCTCAAAAGTCTCGCCGATTATTCATTAATTGCACACCATACCGTGTACTACAAGCTGTCGCTGAGGTGGCAGACAAGTCATCTTCAAGTCTAG

Protein sequence

MFKSTSRTMGSKKEFEGVSRQTRRNRGSQRRWGPNGAHGRGRAGDRAKRPTPSVLARSTCRFRLLGPSLNPISARLSSPVPCASGWSKITYNKTKSLHPIYKGLVLPQALIVEVDALAVINLLTEEDEDLSKIKNFYAEIAILAKRLGSVSFVHCYRSENALAHWVGGPRRRASRRDWAVLAQSHGSRPTCGPSSLPFIRSLVSLVASVPPGLARIAFKRLKTLEEEHVFKPLFVTEEEDPKTHSLNFLLLSCSFALLLQLSDLSIGGSDKYHTGVQVFPPLIQNLQLVAREGAPLSERACLNATWRYMHMEKDNGSNSSKRCVLVVLKSLADYSLIAHHTVYYKLSLRWQTSHLQV

Homology

The following BLAST results are available for this feature:

BLAST of Lag0009773 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0009773 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0009773 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0009773 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 110..166 e-value: 5.6E-9 score: 35.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..23
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 110..165 e-value: 3.61112E-9 score: 52.3164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0009773.1	Lag0009773.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity