Lag0009754 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0009754
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNase H domain-containing protein
Locationchr9: 42000035 .. 42001142 (+)
RNA-Seq ExpressionLag0009754
SyntenyLag0009754
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGGAGGGAGAGCAAACGAAGGCGCTCCCTTAAGCCTCCACAAACGTGTAATGACACTGAAACAGAGTGCGTGAGAGGCTGAAGAAATGGTAGAGCTAATGGGACGTTTATATATGTGGCTTCACTGCAGACTTCTTCTATCGCGTCCAGCTAGGGTTTGCCATTTGGGCTGGGCCTGCTTGATGATTTTAGGCCCATTTATCTGATTTGGGCTAAAAAATGGCTCGAACTTTCCATTTTTAACCCTTCTTACTCCTGTTATTTCAGTTTTGCCCTGACTTTAGGGGAGTTGTGCATTGTTGTTGAATTGTTTTGAAATAGATTGAGTTGTAAATTTTGTTTGTATCTATTTCTAAATTTTGAAAAATTTTAGTTATGATATATACTTGTAATTTATGTTATCATTAGTCTTGTACTATTAATATTGAAAGGTGGATTTATTTGGAGTTTGTGACTATTTTTGTGAGATGAAATTTGGATTCGTGGATTCGTCTATAAAAAAAAAATGAAATTTTGATGGTTCTAAAAATCAAATTTTGAAATTTGGATTCGTGGATTCGCCTGACAAGGGATCGCTTACAGGCCCGACTAGGGGACCAGGAGGATCGCTGTGTGTGGAGGCCACCTCCTGCTGGGGAGTTGAAGTTGAATGTTGATGCCTCTGTCAGGCCTGATACAGGGGAGGCTGGGGGTGGCTGTGTACTGCGGGGGGCTGACGGGGAGGTCTTCATGGCGGCCTGCCTGGACTTGCAGAGGTGTTGGAGTGTGGATTTGGCTGAGGGTTGGGCTGTGTATAAGGGGGTCCAGCTTGCTCGACAGTTGGGGTTTGTTGATTTTGTGGTGGAAACCGACTCTCTGAGGTTGGTTAAAATTCTTCATGGTGGTATTCAGGATGTTTCGGAAGTAGGGCGACTGATGGATGATGTTCGAATGATGCTCCAGCCTTGGGACAATAACAAGGTTTTGTTTTCTCCACGCCAGGGAAACAAGGTGGCGCATGCTCTTGCTAGCTTAGTCTTTTCTTATGTTGACCGTGTTTGGCTTGAAGAAGGGCCTAGCGAAATTTCTGATGTTCTAAGGTGTGATGTTGTGTCTTCCCTGTGA

mRNA sequence

ATGAACGGAGGGAGAGCAAACGAAGGCGCTCCCTTAAGCCTCCACAAACGTGCCCGACTAGGGGACCAGGAGGATCGCTGTGTGTGGAGGCCACCTCCTGCTGGGGAGTTGAAGTTGAATGTTGATGCCTCTGTCAGGCCTGATACAGGGGAGGCTGGGGGTGGCTGTGTACTGCGGGGGGCTGACGGGGAGGTCTTCATGGCGGCCTGCCTGGACTTGCAGAGGTGTTGGAGTGTGGATTTGGCTGAGGGTTGGGCTGTGTATAAGGGGGTCCAGCTTGCTCGACAGTTGGGGTTTGTTGATTTTGTGGTGGAAACCGACTCTCTGAGGTTGGTTAAAATTCTTCATGGTGGTATTCAGGATGTTTCGGAAGTAGGGCGACTGATGGATGATGTTCGAATGATGCTCCAGCCTTGGGACAATAACAAGGTTTTGTTTTCTCCACGCCAGGGAAACAAGGTGGCGCATGCTCTTGCTAGCTTAGTCTTTTCTTATGTTGACCGTGTTTGGCTTGAAGAAGGGCCTAGCGAAATTTCTGATGTTCTAAGGTGTGATGTTGTGTCTTCCCTGTGA

Coding sequence (CDS)

ATGAACGGAGGGAGAGCAAACGAAGGCGCTCCCTTAAGCCTCCACAAACGTGCCCGACTAGGGGACCAGGAGGATCGCTGTGTGTGGAGGCCACCTCCTGCTGGGGAGTTGAAGTTGAATGTTGATGCCTCTGTCAGGCCTGATACAGGGGAGGCTGGGGGTGGCTGTGTACTGCGGGGGGCTGACGGGGAGGTCTTCATGGCGGCCTGCCTGGACTTGCAGAGGTGTTGGAGTGTGGATTTGGCTGAGGGTTGGGCTGTGTATAAGGGGGTCCAGCTTGCTCGACAGTTGGGGTTTGTTGATTTTGTGGTGGAAACCGACTCTCTGAGGTTGGTTAAAATTCTTCATGGTGGTATTCAGGATGTTTCGGAAGTAGGGCGACTGATGGATGATGTTCGAATGATGCTCCAGCCTTGGGACAATAACAAGGTTTTGTTTTCTCCACGCCAGGGAAACAAGGTGGCGCATGCTCTTGCTAGCTTAGTCTTTTCTTATGTTGACCGTGTTTGGCTTGAAGAAGGGCCTAGCGAAATTTCTGATGTTCTAAGGTGTGATGTTGTGTCTTCCCTGTGA

Protein sequence

MNGGRANEGAPLSLHKRARLGDQEDRCVWRPPPAGELKLNVDASVRPDTGEAGGGCVLRGADGEVFMAACLDLQRCWSVDLAEGWAVYKGVQLARQLGFVDFVVETDSLRLVKILHGGIQDVSEVGRLMDDVRMMLQPWDNNKVLFSPRQGNKVAHALASLVFSYVDRVWLEEGPSEISDVLRCDVVSSL
Homology
BLAST of Lag0009754 vs. NCBI nr
Match: XP_022150944.1 (uncharacterized protein LOC111018973 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-23
Identity = 67/160 (41.88%), Postives = 94/160 (58.75%), Query Frame = 0

Query: 28  VWRPPPAGELKLNVDASVRPDTGEAGGGCVLRGADGEVFMAACLDLQRCWSVDLAEGWAV 87
           +WRPP A  LK+NVDA+ R ++  AG G ++R + G V++ A   L R   VD  EG+AV
Sbjct: 103 IWRPPAAPLLKVNVDAAFRKESFVAGVGVIIRDSTGLVYLTAIRLLARASDVDWVEGFAV 162

Query: 88  YKGVQLARQLGFVDFVVETDSLRLVKILHGGIQDVSEVGRLMDDVRMMLQPW-DNNKVLF 147
           Y+G+ LA + GF+ F +ETDSLR+  +L     D SEVG L   +++ L    +     F
Sbjct: 163 YEGILLAVEAGFIRFQIETDSLRIFNLLTTDCVDDSEVGVLCSVIKLFLSSHAERVSFSF 222

Query: 148 SPRQGNKVAHALASLVFSYVD-RVWLEEGPSEISDVLRCD 186
           + R GN  AH LA L  +    ++W+EE P EIS VL  D
Sbjct: 223 THRNGNAXAHLLAQLALTSPHLQIWVEEWPDEISSVLAVD 262

BLAST of Lag0009754 vs. NCBI nr
Match: XP_021809818.1 (uncharacterized protein LOC110753261 [Prunus avium])

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-19
Identity = 63/163 (38.65%), Postives = 90/163 (55.21%), Query Frame = 0

Query: 29  WRPPPAGELKLNVDASVRPDTGEAGGGCVLRGADGEVFMAACLDLQRCWSVDLAEGWAVY 88
           W PPP G  KLNVDA+  P+TG +G G V+R   GEV  A  L L    S   AE  A+ 
Sbjct: 59  WSPPPVGRYKLNVDAAFIPETGVSGIGAVVRNDKGEVMAAMALPLANATSSKHAEIMALQ 118

Query: 89  KGVQLARQLGFVDFVVETDSLRLVK-ILHGGIQDVSEVGRLMDDVRMMLQPWDNNKVLFS 148
            G+  AR  GF  F++E+DS  +V  +     +  +  G L+DD++  LQ ++   + FS
Sbjct: 119 FGMNFARDAGFSSFLMESDSQGVVNDVKKDEEESWASDGHLIDDIKRSLQHFEEVTISFS 178

Query: 149 PRQGNKVAHALASLVFSYVDRV-WLEEGPSEISDVLRCDVVSS 190
           PR+ N+VAH LA    +  + V W+EE P  +  V+  D+V S
Sbjct: 179 PRRCNQVAHFLARHALNCDNMVTWIEEVPFWLDSVVNDDIVVS 221

BLAST of Lag0009754 vs. NCBI nr
Match: XP_021716820.1 (uncharacterized protein LOC110684687 [Chenopodium quinoa])

HSP 1 Score: 105.9 bits (263), Expect = 3.9e-19
Identity = 60/162 (37.04%), Postives = 92/162 (56.79%), Query Frame = 0

Query: 29  WRPPPAGELKLNVDASVRPDTGEAGGGCVLRGADGEVFMAACLDLQRCWSVDLAEGWAVY 88
           W+PP  G +K+N DA++  D    G G V+R A GEV +A CL L+  + VD+AE  A+ 
Sbjct: 141 WKPPTQGMIKINSDAAIF-DNSAVGLGGVMRDALGEVVVATCLCLRSKYEVDVAEALALR 200

Query: 89  KGVQLARQLGFVDFVVETDSLRLVKILHGGIQDVSEVGRLMDDVRMMLQPWDNNKVLFSP 148
             +++A +  F    +ETD +++   L  G    + +G +++D+  + +   +    F  
Sbjct: 201 HSLRIALESEFRKVCLETDCMKVFSHLTKGCAPATILGMVINDIMQLARGCQSCSFSFVK 260

Query: 149 RQGNKVAHALASLVFSYVD-RVWLEEGPSEISDVLRCDVVSS 190
           R GN  AHALA L  SY D RVW+EE PSEIS  +  D+ S+
Sbjct: 261 RSGNGAAHALAKLSSSYGDLRVWMEEVPSEISPFVMADLASA 301

BLAST of Lag0009754 vs. NCBI nr
Match: XP_021841246.1 (uncharacterized protein LOC110781352 [Spinacia oleracea])

HSP 1 Score: 104.8 bits (260), Expect = 8.6e-19
Identity = 53/157 (33.76%), Postives = 89/157 (56.69%), Query Frame = 0

Query: 29  WRPPPAGELKLNVDASVRPDTGEAGGGCVLRGADGEVFMAACLDLQRCWSVDLAEGWAVY 88
           W PP  G LK+NVD ++  D G AG G ++R  +G V  AACL +   W V + E  ++ 
Sbjct: 76  WSPPATGVLKINVDGAIFKDVG-AGMGVIIRDEEGAVVRAACLQVAHQWEVSIVEAKSIV 135

Query: 89  KGVQLARQLGFVDFVVETDSLRLVKILHGGIQDVSEVGRLMDDVRMMLQPWDNNKVLFSP 148
            G++LA Q G  D VVE+D L+++K+++G I+D   +G +  ++R +   +D+   +   
Sbjct: 136 LGLKLAIQCGARDVVVESDCLKVIKLVNGEIRDGLYLGMIGREIREIASLFDSINFVHVY 195

Query: 149 RQGNKVAHALASLVFSYVDRVWLEEGPSEISDVLRCD 186
           R+ N   H +A  +  +  RVW+   PS + D++  D
Sbjct: 196 REANLADHTMA--MHEFCTRVWIRGCPSIVEDIVATD 229

BLAST of Lag0009754 vs. NCBI nr
Match: KAF7802400.1 (uncharacterized protein G2W53_041511 [Senna tora])

HSP 1 Score: 104.8 bits (260), Expect = 8.6e-19
Identity = 57/165 (34.55%), Postives = 96/165 (58.18%), Query Frame = 0

Query: 29  WRPPPAGELKLNVDASVRPDTGEAGGGCVLRGADGEVFMAACLDLQRCWSVDLAEGWAVY 88
           W+PP    LKLNVDASVR D G+   GC++R   G    A   ++  C+SV++AE  AVY
Sbjct: 605 WQPPSWRFLKLNVDASVR-DGGQTRVGCIIRDYMGRCLAAMTKEITGCYSVEMAEALAVY 664

Query: 89  KGVQLARQLGFVDFVVETDSLRLVKILHGGIQDVSEVGRLMDDVRMMLQPWDNNKVLFSP 148
           +G+ +A+++  ++ +VE DS  ++K+L+G   D + V  ++ D+  +   + +    +  
Sbjct: 665 EGMVVAKRMSILNVLVEGDSASVIKLLNGEGMDCTYVSFIIKDILQLCSSFRSYSFNWVR 724

Query: 149 RQGNKVAHALASLVFSYVD-----RVWLEEGPSEISDVLRCDVVS 189
           R+ NKVAH LA    ++        VWLE+ PS I + L+ D+++
Sbjct: 725 REANKVAHILAHDPVAFPSDNSGILVWLEDYPSLICNALKSDILT 768

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022150944.12.0e-2341.88uncharacterized protein LOC111018973 [Momordica charantia][more]
XP_021809818.11.3e-1938.65uncharacterized protein LOC110753261 [Prunus avium][more]
XP_021716820.13.9e-1937.04uncharacterized protein LOC110684687 [Chenopodium quinoa][more]
XP_021841246.18.6e-1933.76uncharacterized protein LOC110781352 [Spinacia oleracea][more]
KAF7802400.18.6e-1934.55uncharacterized protein G2W53_041511 [Senna tora][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 40..160
e-value: 1.2E-24
score: 86.5
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 34..163
e-value: 2.0E-14
score: 55.8
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 25..174
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 39..159
e-value: 9.05376E-22
score: 83.9028
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 37..165

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0009754.1Lag0009754.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity