Lag0009723 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0009723
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	transcription elongation factor B polypeptide 3
Location	chr9: 41763208 .. 41765242 (+)
RNA-Seq Expression	Lag0009723
Synteny	Lag0009723

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAAATGTGAGACGCTTGATTTTTCTTGTAGAGCAGCTGGTTACCTGGAGCTATATTTGCCGGCTTTTTTTCTTTTTAAATCCAGCCAGTATTTTGTCTACTATTCAAAGAAGTCGCAGTTGTGTAATTTGGTTGGTCTGTTTTGTTTTTTTTTCCTTAGCTTGGCAACCTGAGAAAGAAGTGATGTATCGAGTAAGAAAAATTCCGTCATTGGTTGATCTTTGTGTTAACAAAGCTATAGATAATCTGAGGTTTCTTGGAGATGTTGGCGAAACTGATATACATCTTCTAGAGCGTATTTTGCCACATTGCACTGTTGAACAGTTGATGCATGTGGAGAAAAGTTCAGAAGTAAGATTGGATGGATTTGCTTCTTATTTAACTATCTGGTTTTGCTTTAGTATATATGCTAAATTGAGTATGAACTTCTTTTAGGGAAGAGATCTGACTCCGGTAACTGATAAATTATGGAAAAAATTCTATGAAAGACAGTTTGGTAGAGAAAATACCATTACTGTAATTGAGAGGATGCAGCAGAAAAGAGTAGCATTTAGATGGATTCAATTATATGAGGTAGCTTTCCTTTTACTTCTCCTCTCCTGCTATTTACTTTGGTTAGCATGATAATGGTGTCTCTGAGAAATTACCATTAAAATGAAGCTATCTACTTTCAGGCGAAGATGAAGGACATAGAAAAGAATGAGAGCAAAGCTGCAGATCGAATAAAACAAAGCTACCTAAAGGAAAATGCCCGTATGTTCTATATATTTGAGTACTCTCTATAGGATTTCCTCATAATTTTAAATTTAAGCTAACAAATAGCTAATCATGTAATGTATCACGTATGCTATCTGGTTGTTACCCATTCCAATCAATGTGTTATACTATAGGTTCATACATGTATGAATGTTATTGATCTTTTACATGTATTTTAGGAATCAATAATTTTATTGTAAATTCAATTAGATATTTTCTTAACATATGAGATTTTGGAAACATTTTAGGTAAACAAAGTCGCCAAATACAGATTTGCAGTAAGGTTCCCCCTTCGAGCAATAAGAGAAGCTTTGGAGGTAAACTTTATTGCTCCTTACATTTTATTTTCTTTTTGGCTTTTGGGTAATAGATTCCGACTCTGGCAAGGCTGCAGCTGGCACCCTGGAAAGCAAAATTACTTTCTTGTTATTTTAATCTTCATTTTTCATAGGAACCGGATATGGCTGCAATGTGGCAAACACTAAGAACAAGCTGCTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGGTAAAACTATTGAATTTGATACCTGAAAGTGGCCAGTCTGAAAATATTGGGCTTAAACAAAAAATGGTCTTACAATTTATAGCTTGTTACTTACTTTTAACTATAGACGTTGCCTAAAATCTAATGTGCCGCAAAGAAAATAAAACATTAAATTTGATCCTTCTCTGCTTAGAATCTGATGCATCGCTAGGTCAAATAGATTAATGAGATGCCTTTTCCATCTATTTTAAAGCTTCTTTACAAAAAATAATTCTTGAACGGTTGCTTTTTGCGTGCTATGGATCAGAAGCCAATGGTTGTTGTGTTATAAGTTTGTAATTTAATCATGGAAGCATGTCTATGTAGATCCTTTATCACATCCCCAGAGCCCAATCTGACAAAATTTCTACAATCAGTTACTCTCATTTTCAAACTGTACCTACCCCTCCATGCTTGAAGTAAAGCCCTTTTTCATGTGTGTTCACTGAAAGTTCTCCAATACTGATACCTATCTTTGAACAGTCAAGAGATGAAAAATATAAAAGCCTGGCGGAGAAATGCAGTGCAGAAGAGTCCTGAGTAAGTTGCATTGCATCTGTTTGCTCTATAATTCTCATTGCTTTTGAAACCACCTATTCACGAACTCGACGCTGACGTTCACTTTGTCGCTTTTGTCTCCAGTATTCCTTCCACAAAGAAGCCAATGTATTCTGGAAGGGATTCCGCTTCGACTTCTAAAAATACTACCACTTATATGGCCAGAAGATAG

mRNA sequence

ATGCTTAAATGTGAGACGCTTGATTTTTCTTGTAGAGCAGCTGCTTGGCAACCTGAGAAAGAAGTGATGTATCGAGTAAGAAAAATTCCGTCATTGGTTGATCTTTGTGTTAACAAAGCTATAGATAATCTGAGGTTTCTTGGAGATGTTGGCGAAACTGATATACATCTTCTAGAGCGTATTTTGCCACATTGCACTGTTGAACAGTTGATGCATGTGGAGAAAAGTTCAGAAGGAAGAGATCTGACTCCGGTAACTGATAAATTATGGAAAAAATTCTATGAAAGACAGTTTGGTAGAGAAAATACCATTACTGTAATTGAGAGGATGCAGCAGAAAAGAGTAGCATTTAGATGGATTCAATTATATGAGGCGAAGATGAAGGACATAGAAAAGAATGAGAGCAAAGCTGCAGATCGAATAAAACAAAGCTACCTAAAGGAAAATGCCCGTAAACAAAGTCGCCAAATACAGATTTGCAGTAAGGTTCCCCCTTCGAGCAATAAGAGAAGCTTTGGAGGAACCGGATATGGCTGCAATGTGGCAAACACTAAGAACAAGCTGCTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGTCAAGAGATGAAAAATATAAAAGCCTGGCGGAGAAATGCAGTGCAGAAGAGTCCTGATATTCCTTCCACAAAGAAGCCAATGTATTCTGGAAGGGATTCCGCTTCGACTTCTAAAAATACTACCACTTATATGGCCAGAAGATAG

Coding sequence (CDS)

ATGCTTAAATGTGAGACGCTTGATTTTTCTTGTAGAGCAGCTGCTTGGCAACCTGAGAAAGAAGTGATGTATCGAGTAAGAAAAATTCCGTCATTGGTTGATCTTTGTGTTAACAAAGCTATAGATAATCTGAGGTTTCTTGGAGATGTTGGCGAAACTGATATACATCTTCTAGAGCGTATTTTGCCACATTGCACTGTTGAACAGTTGATGCATGTGGAGAAAAGTTCAGAAGGAAGAGATCTGACTCCGGTAACTGATAAATTATGGAAAAAATTCTATGAAAGACAGTTTGGTAGAGAAAATACCATTACTGTAATTGAGAGGATGCAGCAGAAAAGAGTAGCATTTAGATGGATTCAATTATATGAGGCGAAGATGAAGGACATAGAAAAGAATGAGAGCAAAGCTGCAGATCGAATAAAACAAAGCTACCTAAAGGAAAATGCCCGTAAACAAAGTCGCCAAATACAGATTTGCAGTAAGGTTCCCCCTTCGAGCAATAAGAGAAGCTTTGGAGGAACCGGATATGGCTGCAATGTGGCAAACACTAAGAACAAGCTGCTGAAGAAGGCAAAGATAGAAGTGCTTCAGAGTCAAGAGATGAAAAATATAAAAGCCTGGCGGAGAAATGCAGTGCAGAAGAGTCCTGATATTCCTTCCACAAAGAAGCCAATGTATTCTGGAAGGGATTCCGCTTCGACTTCTAAAAATACTACCACTTATATGGCCAGAAGATAG

Protein sequence

MLKCETLDFSCRAAAWQPEKEVMYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLERILPHCTVEQLMHVEKSSEGRDLTPVTDKLWKKFYERQFGRENTITVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEMKNIKAWRRNAVQKSPDIPSTKKPMYSGRDSASTSKNTTTYMARR

Homology

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BLAST of Lag0009723 vs. NCBI nr
Match: XP_016901950.1 (PREDICTED: transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo])

HSP 1 Score: 411.0 bits (1055), Expect = 7.3e-111
Identity = 207/224 (92.41%), Postives = 220/224 (98.21%), Query Frame = 0


Query: 23  MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLERILPHCTVEQLMHVEKSSEGRDL 82
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLLERILPHCTV+QLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 83  TPVTDKLWKKFYERQFGRENTITVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 142
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 143 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 202
           QSYLKENARKQSRQIQICSKVPPSSNKRSFGG+GYG NVANTKNK+LKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 203 KNIKAWRRNAVQKSPDIPSTKKPMYSGRDSASTSKNTTTYMARR 247
           KNIKAWRRNAVQKS DIPSTKKPM+ GR+SASTSKNT+T+MA+R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKR 224

[Close]

BLAST of Lag0009723 vs. NCBI nr
Match: TYJ98274.1 (transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 411.0 bits (1055), Expect = 7.3e-111
Identity = 207/224 (92.41%), Postives = 220/224 (98.21%), Query Frame = 0


Query: 23  MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLERILPHCTVEQLMHVEKSSEGRDL 82
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLLERILPHCTV+QLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 83  TPVTDKLWKKFYERQFGRENTITVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 142
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 143 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 202
           QSYLKENARKQSRQIQICSKVPPSSNKRSFGG+GYG NVANTKNK+LKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 203 KNIKAWRRNAVQKSPDIPSTKKPMYSGRDSASTSKNTTTYMARR 247
           KNIKAWRRNAVQKS DIPSTKKPM+ GR+SASTSKNT+T+MA+R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKR 224

[Close]

BLAST of Lag0009723 vs. NCBI nr
Match: XP_008456387.2 (PREDICTED: transcription elongation factor B polypeptide 3 isoform X1 [Cucumis melo])

HSP 1 Score: 411.0 bits (1055), Expect = 7.3e-111
Identity = 207/224 (92.41%), Postives = 220/224 (98.21%), Query Frame = 0


Query: 23  MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLERILPHCTVEQLMHVEKSSEGRDL 82
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLLERILPHCTV+QLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 83  TPVTDKLWKKFYERQFGRENTITVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 142
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 143 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 202
           QSYLKENARKQSRQIQICSKVPPSSNKRSFGG+GYG NVANTKNK+LKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 203 KNIKAWRRNAVQKSPDIPSTKKPMYSGRDSASTSKNTTTYMARR 247
           KNIKAWRRNAVQKS DIPSTKKPM+ GR+SASTSKNT+T+MA+R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKR 224

[Close]

BLAST of Lag0009723 vs. NCBI nr
Match: KAG6604740.1 (hypothetical protein SDJN03_02057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 410.2 bits (1053), Expect = 1.2e-110
Identity = 209/237 (88.19%), Postives = 223/237 (94.09%), Query Frame = 0


Query: 10  SCRAAAWQPEKEVMYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLERILPHCTVEQ 69
           S +  AWQPEKE MY VRK+PSLVDLCV KAIDNLRFLGDVGETD+HLLERILPHCTV+Q
Sbjct: 20  SSQTVAWQPEKEEMYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQ 79

Query: 70  LMHVEKSSEGRDLTPVTDKLWKKFYERQFGRENTITVIERMQQKRVAFRWIQLYEAKMKD 129
           LMHVEKSSEGRDLTPVTDKLWKKFYERQFGRENT  V ERMQ+K+VAFRWIQLYEAKMKD
Sbjct: 80  LMHVEKSSEGRDLTPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKD 139

Query: 130 IEKNESKAADRIKQSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLL 189
           IEKNES+AADRIKQSYLKENARKQSRQIQICSKVPP+SNKRSF G GYG NV NTKNKLL
Sbjct: 140 IEKNESEAADRIKQSYLKENARKQSRQIQICSKVPPASNKRSF-GAGYGSNVTNTKNKLL 199

Query: 190 KKAKIEVLQSQEMKNIKAWRRNAVQKSPDIPSTKKPMYSGRDSASTSKNTTTYMARR 247
           KK+KIEVLQSQEMKNIKAWRRNAVQK+ DIPSTKKPM+SGRDSASTSK+TTT+MAR+
Sbjct: 200 KKSKIEVLQSQEMKNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARK 255

[Close]

BLAST of Lag0009723 vs. NCBI nr
Match: XP_004143189.1 (transcription elongation factor B polypeptide 3 isoform X1 [Cucumis sativus] >KAE8646931.1 hypothetical protein Csa_021040 [Cucumis sativus])

HSP 1 Score: 409.5 bits (1051), Expect = 2.1e-110
Identity = 207/224 (92.41%), Postives = 220/224 (98.21%), Query Frame = 0


Query: 23  MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLERILPHCTVEQLMHVEKSSEGRDL 82
           MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLL+RILPHCTV+QLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLDRILPHCTVDQLMHVEKSSEGRDL 60

Query: 83  TPVTDKLWKKFYERQFGRENTITVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 142
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMEDIEKNESKAADRIK 120

Query: 143 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 202
           QSYLKENARKQSRQIQICSKVPPSSNKRSFGG+GYG NVANTKNK+LKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 203 KNIKAWRRNAVQKSPDIPSTKKPMYSGRDSASTSKNTTTYMARR 247
           KNIKAWRRNAVQKS DI STKKPM+SGR+SASTSKNT+T+MA+R
Sbjct: 181 KNIKAWRRNAVQKSSDISSTKKPMFSGRESASTSKNTSTHMAKR 224

[Close]

BLAST of Lag0009723 vs. ExPASy TrEMBL
Match: A0A5D3BGR1 (Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00180 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.5e-111
Identity = 207/224 (92.41%), Postives = 220/224 (98.21%), Query Frame = 0


Query: 23  MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLERILPHCTVEQLMHVEKSSEGRDL 82
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLLERILPHCTV+QLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 83  TPVTDKLWKKFYERQFGRENTITVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 142
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 143 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 202
           QSYLKENARKQSRQIQICSKVPPSSNKRSFGG+GYG NVANTKNK+LKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 203 KNIKAWRRNAVQKSPDIPSTKKPMYSGRDSASTSKNTTTYMARR 247
           KNIKAWRRNAVQKS DIPSTKKPM+ GR+SASTSKNT+T+MA+R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKR 224

[Close]

BLAST of Lag0009723 vs. ExPASy TrEMBL
Match: A0A1S4E1U0 (transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.5e-111
Identity = 207/224 (92.41%), Postives = 220/224 (98.21%), Query Frame = 0


Query: 23  MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLERILPHCTVEQLMHVEKSSEGRDL 82
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLLERILPHCTV+QLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 83  TPVTDKLWKKFYERQFGRENTITVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 142
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 143 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 202
           QSYLKENARKQSRQIQICSKVPPSSNKRSFGG+GYG NVANTKNK+LKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 203 KNIKAWRRNAVQKSPDIPSTKKPMYSGRDSASTSKNTTTYMARR 247
           KNIKAWRRNAVQKS DIPSTKKPM+ GR+SASTSKNT+T+MA+R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKR 224

[Close]

BLAST of Lag0009723 vs. ExPASy TrEMBL
Match: A0A1S3C4D6 (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496337 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.5e-111
Identity = 207/224 (92.41%), Postives = 220/224 (98.21%), Query Frame = 0


Query: 23  MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLERILPHCTVEQLMHVEKSSEGRDL 82
           MYRVRKIPSLVDLCVNKAIDN+RFLGDVGETDIHLLERILPHCTV+QLMHVEKSSEGRDL
Sbjct: 1   MYRVRKIPSLVDLCVNKAIDNIRFLGDVGETDIHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 83  TPVTDKLWKKFYERQFGRENTITVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 142
           TPVTDKLWKKFYERQFG+E+T TVIERM+QKRVAFRWIQLYEAKM+DIEKNESKAADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGKESTTTVIERMRQKRVAFRWIQLYEAKMQDIEKNESKAADRIK 120

Query: 143 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 202
           QSYLKENARKQSRQIQICSKVPPSSNKRSFGG+GYG NVANTKNK+LKKAKIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGSGYGYNVANTKNKILKKAKIEVLQSQEM 180

Query: 203 KNIKAWRRNAVQKSPDIPSTKKPMYSGRDSASTSKNTTTYMARR 247
           KNIKAWRRNAVQKS DIPSTKKPM+ GR+SASTSKNT+T+MA+R
Sbjct: 181 KNIKAWRRNAVQKSSDIPSTKKPMFPGRESASTSKNTSTHMAKR 224

[Close]

BLAST of Lag0009723 vs. ExPASy TrEMBL
Match: A0A6J1G8W9 (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451808 PE=4 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 5.3e-107
Identity = 201/224 (89.73%), Postives = 214/224 (95.54%), Query Frame = 0


Query: 23  MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLERILPHCTVEQLMHVEKSSEGRDL 82
           MY VRK+PSLVDLCV KAIDNLRFLGDVGETD+HLLERILPHCTV+QLMHVEKSSEGRDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 83  TPVTDKLWKKFYERQFGRENTITVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 142
           TPVTDKLWKKFYERQFGRENT  V ERMQ+K+VAFRWIQLYEAKMKDIEKNES+AADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRENTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 143 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 202
           QSYLKENARKQSRQIQICSKVPP+SNKRSFG  GYG NV NTKNKLLKK+KIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGAAGYGSNVTNTKNKLLKKSKIEVLQSQEM 180

Query: 203 KNIKAWRRNAVQKSPDIPSTKKPMYSGRDSASTSKNTTTYMARR 247
           KNIKAWRRNAVQK+ DIPSTKKPM+SGRDSASTSK+TTT+MAR+
Sbjct: 181 KNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARK 224

[Close]

BLAST of Lag0009723 vs. ExPASy TrEMBL
Match: A0A6J1I1I3 (transcription elongation factor B polypeptide 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469662 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 2.0e-106
Identity = 200/224 (89.29%), Postives = 214/224 (95.54%), Query Frame = 0


Query: 23  MYRVRKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLERILPHCTVEQLMHVEKSSEGRDL 82
           MY VRK+PSLVDLCV KAIDNLRFLGDVGETD+HLLERILPHCTV+QLMHVEKSSEGRDL
Sbjct: 1   MYPVRKVPSLVDLCVYKAIDNLRFLGDVGETDLHLLERILPHCTVDQLMHVEKSSEGRDL 60

Query: 83  TPVTDKLWKKFYERQFGRENTITVIERMQQKRVAFRWIQLYEAKMKDIEKNESKAADRIK 142
           TPVTDKLWKKFYERQFGRE+T  V ERMQ+K+VAFRWIQLYEAKMKDIEKNES+AADRIK
Sbjct: 61  TPVTDKLWKKFYERQFGRESTNIVSERMQKKKVAFRWIQLYEAKMKDIEKNESEAADRIK 120

Query: 143 QSYLKENARKQSRQIQICSKVPPSSNKRSFGGTGYGCNVANTKNKLLKKAKIEVLQSQEM 202
           QSYLKENARKQSRQIQICSKVPP+SNKRSFG  GYG NV NTKNKLLKK+KIEVLQSQEM
Sbjct: 121 QSYLKENARKQSRQIQICSKVPPASNKRSFGAAGYGSNVTNTKNKLLKKSKIEVLQSQEM 180

Query: 203 KNIKAWRRNAVQKSPDIPSTKKPMYSGRDSASTSKNTTTYMARR 247
           KNIKAWRRNAVQK+ DIPSTKKPM+SGRDSASTSK+TTT+MAR+
Sbjct: 181 KNIKAWRRNAVQKTCDIPSTKKPMFSGRDSASTSKSTTTHMARK 224

[Close]

BLAST of Lag0009723 vs. TAIR 10
Match: AT2G42780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). )

HSP 1 Score: 193.0 bits (489), Expect = 2.9e-49
Identity = 105/228 (46.05%), Postives = 152/228 (66.67%), Query Frame = 0


Query: 27  RKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLERILPHCTVEQLMHVEKSSEGRDLTPVT 86
           +K PSLVDLCV KAIDN++++G VG  D  LLE+IL HCT+EQL H+E +++  DL+P+T
Sbjct: 8   KKPPSLVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPIT 67

Query: 87  DKLWKKFYERQFGRENTITVIERMQQKRV-AFRWIQLYEAKMKDIEKNESKAADRIKQSY 146
           DK WK FY++ +G E+   +IE ++  +V  F+W  LYE K+  +++ E +   R+K+ Y
Sbjct: 68  DKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERY 127

Query: 147 LKENARKQSRQIQICSKVPPSSNKRSF-GGTGYGCNVANTKNKLLKKAKIEVLQSQEMKN 206
             EN RKQSRQ ++CSK PPS  KR F G +  G N+ + K+ ++KKAKI++L+SQE+KN
Sbjct: 128 KDENERKQSRQTKVCSKAPPS--KRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKN 187

Query: 207 IKAWRRNAVQKSPDI------------PSTKKPM-YSGRDSASTSKNT 240
           + A +RN +QKS  I            PST + + Y GR+   T KNT
Sbjct: 188 LTAIKRNTIQKSFSISTPKKTGLSANSPSTSRSIPYGGRNLTETKKNT 233

[Close]

BLAST of Lag0009723 vs. TAIR 10
Match: AT2G42780.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684). )

HSP 1 Score: 189.5 bits (480), Expect = 3.2e-48
Identity = 100/214 (46.73%), Postives = 150/214 (70.09%), Query Frame = 0


Query: 27  RKIPSLVDLCVNKAIDNLRFLGDVGETDIHLLERILPHCTVEQLMHVEKSSEGRDLTPVT 86
           +K PSLVDLCV KAIDN++++G VG  D  LLE+IL HCT+EQL H+E +++  DL+P+T
Sbjct: 8   KKPPSLVDLCVRKAIDNVKYIGYVGGVDFQLLEQILQHCTLEQLKHIEDATDDTDLSPIT 67

Query: 87  DKLWKKFYERQFGRENTITVIERMQQKRV-AFRWIQLYEAKMKDIEKNESKAADRIKQSY 146
           DK WK FY++ +G E+   +IE ++  +V  F+W  LYE K+  +++ E +   R+K+ Y
Sbjct: 68  DKFWKGFYKKHYGEEDMKDLIEDLEWNKVNDFKWRNLYELKVIAVQQKEKELGGRLKERY 127

Query: 147 LKENARKQSRQIQICSKVPPSSNKRSF-GGTGYGCNVANTKNKLLKKAKIEVLQSQEMKN 206
             EN RKQSRQ ++CSK PPS  KR F G +  G N+ + K+ ++KKAKI++L+SQE+KN
Sbjct: 128 KDENERKQSRQTKVCSKAPPS--KRPFWGNSASGYNLGHVKSNIMKKAKIDLLKSQEVKN 187

Query: 207 IKAWRRNAVQKSPDIPSTKKPMYSGRDSASTSKN 239
           + A +RN +QKS  I + K+   S  ++ STS++
Sbjct: 188 LTAIKRNTIQKSFSISAPKRTGLSA-NAPSTSRS 218

The following BLAST results are available for this feature:

BLAST of Lag0009723 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901950.1	7.3e-111	92.41	PREDICTED: transcription elongation factor B polypeptide 3 isoform X2 [Cucumis m...	[more]
TYJ98274.1	7.3e-111	92.41	transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. ma...	[more]
XP_008456387.2	7.3e-111	92.41	PREDICTED: transcription elongation factor B polypeptide 3 isoform X1 [Cucumis m...	[more]
KAG6604740.1	1.2e-110	88.19	hypothetical protein SDJN03_02057, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004143189.1	2.1e-110	92.41	transcription elongation factor B polypeptide 3 isoform X1 [Cucumis sativus] >KA...	[more]

BLAST of Lag0009723 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0009723 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BGR1	3.5e-111	92.41	Transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo var. ...	[more]
A0A1S4E1U0	3.5e-111	92.41	transcription elongation factor B polypeptide 3 isoform X2 OS=Cucumis melo OX=36...	[more]
A0A1S3C4D6	3.5e-111	92.41	transcription elongation factor B polypeptide 3 isoform X1 OS=Cucumis melo OX=36...	[more]
A0A6J1G8W9	5.3e-107	89.73	transcription elongation factor B polypeptide 3 isoform X1 OS=Cucurbita moschata...	[more]
A0A6J1I1I3	2.0e-106	89.29	transcription elongation factor B polypeptide 3 isoform X1 OS=Cucurbita maxima O...	[more]

BLAST of Lag0009723 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42780.1	2.9e-49	46.05	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]
AT2G42780.2	3.2e-48	46.73	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcripti...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 120..140
None	No IPR available	GENE3D	6.10.250.3180		coord: 43..149 e-value: 1.7E-21 score: 78.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..246
None	No IPR available	PANTHER	PTHR47543	OS08G0169600 PROTEIN	coord: 23..239
IPR010684	RNA polymerase II transcription factor SIII, subunit A	PFAM	PF06881	Elongin_A	coord: 48..157 e-value: 7.9E-26 score: 90.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0009723.1	Lag0009723.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
cellular_component	GO:0070449	elongin complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003746	translation elongation factor activity