Lag0009705 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0009705
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Small ubiquitin-related modifier
Location	chr9: 41582998 .. 41584994 (-)
RNA-Seq Expression	Lag0009705
Synteny	Lag0009705

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGGTGTCACGAACACGCAGCAGGAGGAAGACAAGAAGCCCAACGACCAATCGGCGCATATCAACCTGAAGGTCAAAGGCCAGGTTGGTTTCTTTCCAGATTTCTTTTAGTCTGGTCGTCTTTTTATATTGGTTTTTGGGAAATTAAGTTCATGCTTAAAGGCTTTAATTTGATGTTTCTTTCATGTGTTTTTTGGTTGTTTGACGTTAGATTGCCTTAATGTTCTCGTTTTCTTTTGTTTTTTCTTGTTTTAGTTTCTTTCACCTATGCCGCTAGGGCTTGTAGGGTTTTATTGATCACTCTAATTCATTCTATGTGCTCTATTAGTGCATCGCCTGTTGGTTGTTCGAAAAAATTGAAGCCGGAAAATGGAAAAAAAATAAGTTTATCGTTTTAAATTTGCAATGTGGCAGGTGCAGTAGTTTTATTTTGTTCCTTTTTCTTTAGGAAAAAAACTATGTCAGAATCTAGCAAAGCCGATTAAGTGATAGGTGGAATTCTAGTTTCTATTGTTGGATTAATATTTGCAGTTCTGTTGCCATTCAGCCTGTTTCATTTTCCTTTTTGTTTGTTATACTCACTCTGGGAAGCAAAATGCTGTTGTAGCTTGATTTGTCTTTTGTCATCATGATTGCGAAGTCTGCCATTCCGTTCTCACATAAATTATCTGGGAGACTGGGACTGAATTTGAGATGGAGGACAGGACTGAGTTCTTTGATATCCTTCTAGTTTACTTTTCGTTTGGATAGATTTATCTCTTGTGGATCGAATACCTGCTGGGCTGTAGCATTCTTTTGTTCATTTTGTTGGAATACATTAAGAAATGACCCTTTTTTCTTATATTACAGTGAATGGAGTGGGTTTGATATATTTTAAAGATTCAATTAAATGTAATATAAACCAAGGCGCTTAGTAAATAGAATAGAGTGTTATTTATTTAAAAAAAAAAAGTAAATAGAATAGAGTGATTTATTGTAAGCTCCTATGTCTTGGGGTTCCTCACAATTCTTTTACCATTTCAATGAAAGGTTCAGTTGCGCCATTATATTAAATAAGAATAGTAATACAAGTCTACAAACGTACAATAGCAGTAGAACTGTAGAAGTAAGACAGTTTCAGCCATCTTCTTAATACACCATTGAATATTACACGTGTGGTTTTGATTTGATTTCTCTCTTTTGTTTACCTTGGAAACATGGTGCTTTGGAGAACGTGTTTAATCTATCTATTGCGTTATTTGTTACTAAAGTAAGGGGAGCAAGGAGATGAAGTGTTTGTGAATGCTTAGCTAGCTCCACTATTCCTGGATTAATTGTCTCATGGAAAATTTCAGGGACTGAGTCCAACTTGTCTTTTTCTTGCTGTCTGTTCTATCTTCCTCTGACATATGTCTCAGATTCCTTTATCTTTGTTTCACTTTATCTGTTCCCGTTTCCTTTCTCCCTCATTCTTCTTTAACAAGTTCTTTCTGCAATGCTCGTACACCTTTTTCTTCCCTTTTTGCTTTTCATTTCTAGTTGTTAACTATACCCTTTTTTTTTAAAGAGTTAACTATACCAATTAGTTCTAGTCAATTTTGGTTTGAAATATTGTGTTGGGAGGATTATAAAATTTTTCTCGATCTTCATGAGTTTGTATTTATGAAAGACATGATAACCTCATAGTTATCACCTTTTTTATTTAAAATAGGATGGGAATGAAGTGTTCTTCAGGATTAAAAGGAGCACTCAGCTGAAGAAACTAATGAATGCTTACTGTGATCGACAATCTGTGGATCTGAACTCCATTGCTTTTCTGTTTGATGGTCGTCGTCTTCGTGCAGAGCAAACTCCTGATGAGGTATAATTTTCTCTGATTTCAGCACGAATAGATATTCTATATTAAATTCATGTATTTTTTTTTTTAATAAAAGCACGTGTTATTCCAGCTAGAGATGGAGGATGGGGATGAGATTGATGCAATGTTGCACCAGACTGGTGGATCTGCTCATTGA

mRNA sequence

ATGTCGGGTGTCACGAACACGCAGCAGGAGGAAGACAAGAAGCCCAACGACCAATCGGCGCATATCAACCTGAAGGTCAAAGGCCAGGATGGGAATGAAGTGTTCTTCAGGATTAAAAGGAGCACTCAGCTGAAGAAACTAATGAATGCTTACTGTGATCGACAATCTGTGGATCTGAACTCCATTGCTTTTCTGTTTGATGGTCGTCGTCTTCGTGCAGAGCAAACTCCTGATGAGCTAGAGATGGAGGATGGGGATGAGATTGATGCAATGTTGCACCAGACTGGTGGATCTGCTCATTGA

Coding sequence (CDS)

ATGTCGGGTGTCACGAACACGCAGCAGGAGGAAGACAAGAAGCCCAACGACCAATCGGCGCATATCAACCTGAAGGTCAAAGGCCAGGATGGGAATGAAGTGTTCTTCAGGATTAAAAGGAGCACTCAGCTGAAGAAACTAATGAATGCTTACTGTGATCGACAATCTGTGGATCTGAACTCCATTGCTTTTCTGTTTGATGGTCGTCGTCTTCGTGCAGAGCAAACTCCTGATGAGCTAGAGATGGAGGATGGGGATGAGATTGATGCAATGTTGCACCAGACTGGTGGATCTGCTCATTGA

Protein sequence

MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSAH

Homology

[Close]

BLAST of Lag0009705 vs. NCBI nr
Match: KAG6570548.1 (Tyrosine-protein phosphatase DSP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197.6 bits (501), Expect = 5.1e-47
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 243 MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 302

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSA 100
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS+
Sbjct: 303 SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSS 341

[Close]

BLAST of Lag0009705 vs. NCBI nr
Match: XP_008456407.1 (PREDICTED: small ubiquitin-related modifier 1 [Cucumis melo] >KAA0054458.1 small ubiquitin-related modifier 1 [Cucumis melo var. makuwa] >TYK14581.1 small ubiquitin-related modifier 1 [Cucumis melo var. makuwa])

HSP 1 Score: 197.6 bits (501), Expect = 5.1e-47
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSA 100
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS+
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSS 99

[Close]

BLAST of Lag0009705 vs. NCBI nr
Match: XP_022943304.1 (small ubiquitin-related modifier 1 [Cucurbita moschata] >XP_022944672.1 small ubiquitin-related modifier 1 [Cucurbita moschata] >XP_022986048.1 small ubiquitin-related modifier 1 [Cucurbita maxima] >XP_023512038.1 small ubiquitin-related modifier 1 [Cucurbita pepo subsp. pepo] >XP_023513384.1 small ubiquitin-related modifier 1 [Cucurbita pepo subsp. pepo] >KAG6570547.1 Small ubiquitin-related modifier 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010405.1 Small ubiquitin-related modifier 2 [Cucurbita argyrosperma subsp. argyrosperma] >KAG7010406.1 Small ubiquitin-related modifier 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197.6 bits (501), Expect = 5.1e-47
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSA 100
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS+
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSS 99

[Close]

BLAST of Lag0009705 vs. NCBI nr
Match: XP_004150752.1 (small ubiquitin-related modifier 1 [Cucumis sativus] >XP_038902909.1 small ubiquitin-related modifier 1-like [Benincasa hispida] >KGN46994.1 hypothetical protein Csa_020805 [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 8.8e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
          MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1  MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61 SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS 99
          SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS
Sbjct: 61 SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS 98

[Close]

BLAST of Lag0009705 vs. NCBI nr
Match: XP_022986050.1 (small ubiquitin-related modifier 1-like [Cucurbita maxima])

HSP 1 Score: 195.3 bits (495), Expect = 2.5e-46
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNT QEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1   MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSA 100
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS+
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSS 99

[Close]

BLAST of Lag0009705 vs. ExPASy Swiss-Prot
Match: P55852 (Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2)

HSP 1 Score: 172.9 bits (437), Expect = 1.8e-42
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 6  NTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFL 65
          +  QEEDKKP D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+NSIAFL
Sbjct: 2  SANQEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFL 61

Query: 66 FDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS 99
          FDGRRLRAEQTPDEL+MEDGDEIDAMLHQTGGS
Sbjct: 62 FDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGS 94

[Close]

BLAST of Lag0009705 vs. ExPASy Swiss-Prot
Match: Q9FLP6 (Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 8.8e-42
Identity = 86/90 (95.56%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 10  EEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGR 69
           EEDKKP DQ AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD NSIAFLFDGR
Sbjct: 6   EEDKKP-DQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSIAFLFDGR 65

Query: 70  RLRAEQTPDELEMEDGDEIDAMLHQTGGSA 100
           RLRAEQTPDELEMEDGDEIDAMLHQTGG A
Sbjct: 66  RLRAEQTPDELEMEDGDEIDAMLHQTGGGA 94

[Close]

BLAST of Lag0009705 vs. ExPASy Swiss-Prot
Match: P55857 (Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SUMO1 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 9.1e-39
Identity = 81/91 (89.01%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 10 EEDKKP---NDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLF 69
          EEDKKP       AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+N+IAFLF
Sbjct: 6  EEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLF 65

Query: 70 DGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 98
          DGRRLR EQTPDELEMEDGDEIDAMLHQTGG
Sbjct: 66 DGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 96

[Close]

BLAST of Lag0009705 vs. ExPASy Swiss-Prot
Match: O13351 (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pmt3 PE=1 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-23
Identity = 53/96 (55.21%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 5   TNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAF 64
           T    ++D KP+ +  HINLKV GQD NEVFF+IK++T+  KLM  YC RQ   +NS+ F
Sbjct: 21  TGDTSQQDVKPSTE--HINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRF 80

Query: 65  LFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSAH 101
           L DG R+R +QTP EL+MEDGD+I+A+L Q GG  H
Sbjct: 81  LVDGERIRPDQTPAELDMEDGDQIEAVLEQLGGCTH 114

[Close]

BLAST of Lag0009705 vs. ExPASy Swiss-Prot
Match: Q9FLP5 (Small ubiquitin-related modifier 3 OS=Arabidopsis thaliana OX=3702 GN=SUMO3 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.5e-20
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 11 EDKKPND--QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDG 70
          +D KP D  Q AH+ LKVK QDG+EV F+ K+S  LKKLM  YCDR+ + L++ AF+F+G
Sbjct: 5  QDDKPIDQEQEAHVILKVKSQDGDEVLFKNKKSAPLKKLMYVYCDRRGLKLDAFAFIFNG 64

Query: 71 RRLRAEQTPDELEMEDGDEIDAMLHQTGG 98
           R+   +TPDEL+MEDGD IDA    +GG
Sbjct: 65 ARIGGLETPDELDMEDGDVIDACRAMSGG 93

The following BLAST results are available for this feature:

BLAST of Lag0009705 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570548.1	5.1e-47	98.99	Tyrosine-protein phosphatase DSP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008456407.1	5.1e-47	98.99	PREDICTED: small ubiquitin-related modifier 1 [Cucumis melo] >KAA0054458.1 small...	[more]
XP_022943304.1	5.1e-47	98.99	small ubiquitin-related modifier 1 [Cucurbita moschata] >XP_022944672.1 small ub...	[more]
XP_004150752.1	8.8e-47	100.00	small ubiquitin-related modifier 1 [Cucumis sativus] >XP_038902909.1 small ubiqu...	[more]
XP_022986050.1	2.5e-46	97.98	small ubiquitin-related modifier 1-like [Cucurbita maxima]	[more]

BLAST of Lag0009705 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P55852	1.8e-42	91.40	Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1...	[more]
Q9FLP6	8.8e-42	95.56	Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1...	[more]
P55857	9.1e-39	89.01	Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=S...	[more]
O13351	1.4e-23	55.21	Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
Q9FLP5	9.5e-20	55.06	Small ubiquitin-related modifier 3 OS=Arabidopsis thaliana OX=3702 GN=SUMO3 PE=1...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 22..93 e-value: 2.5E-14 score: 63.6
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 20..97 score: 15.906139
IPR022617	Rad60/SUMO-like domain	PFAM	PF11976	Rad60-SLD	coord: 22..92 e-value: 5.3E-25 score: 87.0
None	No IPR available	GENE3D	3.10.20.90		coord: 1..97 e-value: 4.7E-41 score: 141.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR10562	SMALL UBIQUITIN-RELATED MODIFIER	coord: 5..98
None	No IPR available	PANTHER	PTHR10562:SF87	SMALL UBIQUITIN-RELATED MODIFIER	coord: 5..98
None	No IPR available	CDD	cd16116	Ubl_Smt3_like	coord: 20..93 e-value: 3.53433E-48 score: 145.834
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 8..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0009705.1	Lag0009705.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016925	protein sumoylation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0031386	protein tag
molecular_function	GO:0044389	ubiquitin-like protein ligase binding
molecular_function	GO:0005515	protein binding