Lag0009616 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0009616
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	SYP124 protein
Location	chr9: 40878227 .. 40880377 (+)
RNA-Seq Expression	Lag0009616
Synteny	Lag0009616

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACCTTAGCGGCTGCTGCAGTTCGTCAAGCCAGAGCCCTAACTCGAGTCTCCTCTCCTCAGTCAACCGCCACCCTTATTCACAGGCGCGGTCTCGCTGGCGCTGCCGGTAGGTTTCATCTCCCGATCTCATTTTTACGCATTCAGATCATCCGCTTAGACTAATTCCATTTTCGGGTCTTTTCAATCTTCTCTTGTCTGTGGATTTCTTGGAGTTTCATTTCGAAATGGAAAATCGTGGTTATATATTTTTTCCCCAAGTTCTGTTTTGAGGTTTGGCTCTTTATTATTTCCAAGGCTTGCATTGATCTAAGGATCTTGAAAATATGAAATGAAGGTGCGAGTTATCTTTAGTTGTTGGAATGCGTTTTACCTAATTAGAGAACCCATATTTTCTAAGCGTAGATTCCACTCTTATTCTTAGATAACGAGGGTTCGTTGTCTAGAATTGAAATGCGTTTGCTGCATATTTTGTTTTGTTAACTTACTCAATTAAGCAATGAAAACTTTCCAAGATATGAGAATTTTAAACTTGTACTTTTCTCGCATATCATTTGGTTCAATTGGGGACTGTTGCTTTGCTATAGCCCTTATAGTGAAGAAAAAACATGGAAAATTGGTAAAGTGAAATATGATGAAGGCATATAAATAGTAATCACAATGAAAATGGATTTTTATGAAGGCTTAGGTGCTTTTAAAGAGACAGCAAGTTTTTTCACATTGTTTTCCACCACTCATTGATTGTTTGATGGAGATCGTTGTTATGTTGTAAAAACTTCATAATTTGCAAAAATATTAGTATACTAAAATTTGGAAGATATATCAACGCCATACACTATACATGGAATACCTGCCTGCTGCCATGTAATAAATGTTATAAATACAAAAGTTTCTGAAGAATAACCTGCATAGTGCATACTGAATGGAACATAGAAAACCGCCTGTCCTCAAGTCAGTCAGTTTATGATTCATAAAAGTACTCATACCGAGCTTCAGGGTTTGTTTACAAGAATGCACTCTACGAATGCATTTGATCTCCGCCTGTAGTTCCTTTTGTAATGTTTGAATTGGGAGAAAGATGAACTAATAATCATACATTAAAGGAAAAAAGGGAAACATCAAAAGATGAAAGAATAATCTTTTTGCTTGCAAGTTTGATAACTCTCTTTGTTGATATTCGCAGACCACCATGGACCACCGAAGGTTAACTGTTGGCAAGATCCTATGAGCCCATCCAAATGGAAGGAAGAGCATGTGAGACTTGTTTTTTCCATATGAAACTATTAACTTCTTTTTCCGTTCGTTCTTTTATTTTTCTGTCTTTTTCATTTTTGTTCCTATTCTATCTCATCAAATATTAGGATTTAAGAATGAAAATAACAAAAATGTTTACTTTTTAAGACTTTCTAACCAGGGTCTCTTAAATTTTTAATCAACTCAACAAAATACTTGATTTTATTGTTTAAGACTTCAGAGTTCTTTTTGTATGCCAAATTTAATGTAGTTTCCTCAGCCACTTGCAGTGTTAGTATTAGATCAGTCTTATTAATTTAGCTATAATTTGGAATTTATGGGTTTGATTTAGGTCTAAATGCGGCTGTTTGTCTCACTGTATTACTTGTTCTCTTTGCTCTGCATAGGATTTGATGTTGAAAATTCTAAAACCTTGAATCAATAGTCTTACTCTGAAACAGTGAAACTTATGAGTCTTATGTATCTATACCCTCTTCTCCTTAAGTGTTCTAGTCGTGGGGTATAAATAAACAAGGACCTAAATTTCACACTTGTGCTGTATTTAATATTTATTTGTTTCTTCTCGTCTCTTTCAAACAATATTTACTAATGAGAAAATCAAACTTGTTCTGACGGGATTGTGGACTTTTGCAGTTTGTGATTGTCTCTCTATCAGGATGGGGTCTACTCTTCTTTGGAGGGTACAAGTTCTTTACCAGGGGCAAAGGAAAGAAGGACGAGGTACTTCTGAGTTCTGCATTTATTGTCTGTGCGCTCTTAATACTTAAAACCTCTTGGAAGTATTTACAGGTGCTGTTAATTGATATATTATTTGATAGTCATTGATTGGTTTTTGGTTTGTCTTCTTAGACCAATTTGTTTATGCCTCTTATGTCTGAGGAAATGTCACCTTAA

mRNA sequence

ATGGCTACCTTAGCGGCTGCTGCAGTTCGTCAAGCCAGAGCCCTAACTCGAGTCTCCTCTCCTCAGTCAACCGCCACCCTTATTCACAGGCGCGGTCTCGCTGGCGCTGCCGACCACCATGGACCACCGAAGGTTAACTGTTGGCAAGATCCTATGAGCCCATCCAAATGGAAGGAAGAGCATTTTGTGATTGTCTCTCTATCAGGATGGGGTCTACTCTTCTTTGGAGGGTACAAGTTCTTTACCAGGGGCAAAGGAAAGAAGGACGAGACCAATTTGTTTATGCCTCTTATGTCTGAGGAAATGTCACCTTAA

Coding sequence (CDS)

ATGGCTACCTTAGCGGCTGCTGCAGTTCGTCAAGCCAGAGCCCTAACTCGAGTCTCCTCTCCTCAGTCAACCGCCACCCTTATTCACAGGCGCGGTCTCGCTGGCGCTGCCGACCACCATGGACCACCGAAGGTTAACTGTTGGCAAGATCCTATGAGCCCATCCAAATGGAAGGAAGAGCATTTTGTGATTGTCTCTCTATCAGGATGGGGTCTACTCTTCTTTGGAGGGTACAAGTTCTTTACCAGGGGCAAAGGAAAGAAGGACGAGACCAATTTGTTTATGCCTCTTATGTCTGAGGAAATGTCACCTTAA

Protein sequence

MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWQDPMSPSKWKEEHFVIVSLSGWGLLFFGGYKFFTRGKGKKDETNLFMPLMSEEMSP

Homology

[Close]

BLAST of Lag0009616 vs. NCBI nr
Match: XP_038900519.1 (uncharacterized protein LOC120087716 [Benincasa hispida])

HSP 1 Score: 183.3 bits (464), Expect = 1.0e-42
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60
          MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHG PKVNCWQDPMSPSKWKEE
Sbjct: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGSPKVNCWQDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKDE 91
          HFVIVSLSGWGLLFFGGYKFFTRGKGKKDE
Sbjct: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKDE 90

[Close]

BLAST of Lag0009616 vs. NCBI nr
Match: XP_022140380.1 (uncharacterized protein LOC111011068 [Momordica charantia])

HSP 1 Score: 183.3 bits (464), Expect = 1.0e-42
Identity = 88/90 (97.78%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60
          MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCW+DPMSPSKWKEE
Sbjct: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKDE 91
          HFVIVSLSGWGLLFFGGYKFFTRGKGKK+E
Sbjct: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKEE 90

[Close]

BLAST of Lag0009616 vs. NCBI nr
Match: KAA0047889.1 (uncharacterized protein E6C27_scaffold133G001630 [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 8.8e-42
Identity = 92/119 (77.31%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60
           MATLAAAAVRQARAL RVSSPQSTA LIH+RGLAGAADHHGPPKVNCWQDPMSPSKWKEE
Sbjct: 1   MATLAAAAVRQARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61  HFVIVSLSGWGLLFFGGYKFFTRGKGKKDE--------------TNLFMPLMSEE-MSP 105
           HFV+VSLSGWGLL FGGYKFFTRGKG KDE               NLF+P + EE M+P
Sbjct: 61  HFVLVSLSGWGLLIFGGYKFFTRGKGNKDELWVSFELFTISTSVNNLFIPFIFEEGMAP 119

[Close]

BLAST of Lag0009616 vs. NCBI nr
Match: XP_023532872.1 (uncharacterized protein LOC111794912 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.5 bits (454), Expect = 1.5e-41
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60
          MATLAAAAVRQARALTRVSSPQSTATLI RRGLAGAADHHGPPKVNCWQDPMSPSKWKEE
Sbjct: 1  MATLAAAAVRQARALTRVSSPQSTATLIQRRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKDE 91
          HFVIVSLSGWGLLF+GGYKFFT GKGKKDE
Sbjct: 61 HFVIVSLSGWGLLFYGGYKFFTGGKGKKDE 90

[Close]

BLAST of Lag0009616 vs. NCBI nr
Match: KAG7034933.1 (hypothetical protein SDJN02_01726, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.9 bits (450), Expect = 4.4e-41
Identity = 86/93 (92.47%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60
          MATLAA AVRQARALTRVSSPQST+TLI RRGLAGAADHHGPPKVNCWQDPMSPSKWKEE
Sbjct: 1  MATLAATAVRQARALTRVSSPQSTSTLIQRRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKDETNL 94
          HFVIVSLSGWGLLF+GGYKFFT GKGKKDE  L
Sbjct: 61 HFVIVSLSGWGLLFYGGYKFFTGGKGKKDEVLL 93

The following BLAST results are available for this feature:

BLAST of Lag0009616 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900519.1	1.0e-42	98.89	uncharacterized protein LOC120087716 [Benincasa hispida]	[more]
XP_022140380.1	1.0e-42	97.78	uncharacterized protein LOC111011068 [Momordica charantia]	[more]
KAA0047889.1	8.8e-42	77.31	uncharacterized protein E6C27_scaffold133G001630 [Cucumis melo var. makuwa]	[more]
XP_023532872.1	1.5e-41	96.67	uncharacterized protein LOC111794912 [Cucurbita pepo subsp. pepo]	[more]
KAG7034933.1	4.4e-41	92.47	hypothetical protein SDJN02_01726, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lag0009616 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35292	EXPRESSED PROTEIN	coord: 1..92
None	No IPR available	PANTHER	PTHR35292:SF8	SUBFAMILY NOT NAMED	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0009616.1	Lag0009616.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane