Lag0009571 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0009571
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptiondehydration-responsive element-binding protein 2A-like
Locationchr9: 40447814 .. 40448353 (+)
RNA-Seq ExpressionLag0009571
SyntenyLag0009571
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTAAATTAGAAAAATTGCAAACTAGACGGCCTGGATCTTTATCCGTGGCCGAGACTCTAGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAATGAAGAGGCCAAACTCACCCGTAAAGTTCCAGCCAAGGGATCAAAGAAGGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATTTGCGATGTAATTACAGAGGAGTGAGGCAAAGGACATGGGGGAAATGGGTTGCAGAAATTCGGGCACCGAATAGGGGAAGTCGGCTCTGGTTGGGTACATTTCCATCTGCCATTGATGCTGCTCTTGCTTATGATGAAGCTGCAAGGGCCATGTATGGCAGTTTAGCTCGCCTCAATTTTCCCAACATCTCAATTCCAACCTTGCTAAAAGAAAAAGAACCATCAACAAAGGATTCCCCTGAAGTCAAGAGGTCATCAATCTCTTCTTTAGGGTCAACTTCACTTAGTCTGAGTTCTGAGTCCACAATAACATCATCAGATCACTCTGAGGATTGTGCAGGTGAAGATGTCTAG

mRNA sequence

ATGCCTAAATTAGAAAAATTGCAAACTAGACGGCCTGGATCTTTATCCGTGGCCGAGACTCTAGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAATGAAGAGGCCAAACTCACCCGTAAAGTTCCAGCCAAGGGATCAAAGAAGGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATTTGCGATGTAATTACAGAGGAGTGAGGCAAAGGACATGGGGGAAATGGGTTGCAGAAATTCGGGCACCGAATAGGGGAAGTCGGCTCTGGTTGGGTACATTTCCATCTGCCATTGATGCTGCTCTTGCTTATGATGAAGCTGCAAGGGCCATGTATGGCAGTTTAGCTCGCCTCAATTTTCCCAACATCTCAATTCCAACCTTGCTAAAAGAAAAAGAACCATCAACAAAGGATTCCCCTGAAGTCAAGAGGTCATCAATCTCTTCTTTAGGGTCAACTTCACTTAGTCTGAGTTCTGAGTCCACAATAACATCATCAGATCACTCTGAGGATTGTGCAGGTGAAGATGTCTAG

Coding sequence (CDS)

ATGCCTAAATTAGAAAAATTGCAAACTAGACGGCCTGGATCTTTATCCGTGGCCGAGACTCTAGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTAATGAAGAGGCCAAACTCACCCGTAAAGTTCCAGCCAAGGGATCAAAGAAGGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATTTGCGATGTAATTACAGAGGAGTGAGGCAAAGGACATGGGGGAAATGGGTTGCAGAAATTCGGGCACCGAATAGGGGAAGTCGGCTCTGGTTGGGTACATTTCCATCTGCCATTGATGCTGCTCTTGCTTATGATGAAGCTGCAAGGGCCATGTATGGCAGTTTAGCTCGCCTCAATTTTCCCAACATCTCAATTCCAACCTTGCTAAAAGAAAAAGAACCATCAACAAAGGATTCCCCTGAAGTCAAGAGGTCATCAATCTCTTCTTTAGGGTCAACTTCACTTAGTCTGAGTTCTGAGTCCACAATAACATCATCAGATCACTCTGAGGATTGTGCAGGTGAAGATGTCTAG

Protein sequence

MPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNEEAKLTRKVPAKGSKKGCMKGKGGPENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIDAALAYDEAARAMYGSLARLNFPNISIPTLLKEKEPSTKDSPEVKRSSISSLGSTSLSLSSESTITSSDHSEDCAGEDV
Homology
BLAST of Lag0009571 vs. NCBI nr
Match: XP_038900306.1 (putative dehydration-responsive element-binding protein 2H [Benincasa hispida])

HSP 1 Score: 331.3 bits (848), Expect = 5.3e-87
Identity = 167/179 (93.30%), Postives = 174/179 (97.21%), Query Frame = 0

Query: 1   MPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNEEAKLTRKVPAKGSKKGCMKGKGGP 60
           MPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCN+EAKL R+VPAKGSKKGCMKGKGGP
Sbjct: 1   MPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNDEAKLARRVPAKGSKKGCMKGKGGP 60

Query: 61  ENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIDAALAYDEAARAMYGSLARL 120
           EN+RCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFP+AIDAALAYDEAARAMYG+LARL
Sbjct: 61  ENMRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPTAIDAALAYDEAARAMYGTLARL 120

Query: 121 NFPNISIPTLLKEKEPSTKDSPEVKRSSISSLGSTSLSLSSESTITSSDHSEDCAGEDV 180
           NFPNISIPTLLKEKE STKDSPE+KRSSIS LGSTSLSLSSESTIT SDHSEDCA ED+
Sbjct: 121 NFPNISIPTLLKEKESSTKDSPEIKRSSISFLGSTSLSLSSESTIT-SDHSEDCAVEDI 178

BLAST of Lag0009571 vs. NCBI nr
Match: XP_022140755.1 (putative dehydration-responsive element-binding protein 2H [Momordica charantia])

HSP 1 Score: 326.6 bits (836), Expect = 1.3e-85
Identity = 165/179 (92.18%), Postives = 172/179 (96.09%), Query Frame = 0

Query: 1   MPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNEEAKLTRKVPAKGSKKGCMKGKGGP 60
           MPKLEKLQ RRPGS SVAETLAKWKDYNDHLDSCN+E KLTR+VPAKGSKKGCMKGKGGP
Sbjct: 1   MPKLEKLQARRPGSSSVAETLAKWKDYNDHLDSCNDETKLTRRVPAKGSKKGCMKGKGGP 60

Query: 61  ENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIDAALAYDEAARAMYGSLARL 120
           ENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAI+AALAYDEAARAMYG++ARL
Sbjct: 61  ENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIEAALAYDEAARAMYGTMARL 120

Query: 121 NFPNISIPTLLKEKEPSTKDSPEVKRSSISSLGSTSLSLSSESTITSSDHSEDCAGEDV 180
           NFPNISIPTLLKEKE +TKDSPE+KR SISSLGSTSLSLSSESTIT SDHSEDCA EDV
Sbjct: 121 NFPNISIPTLLKEKESATKDSPEIKRPSISSLGSTSLSLSSESTIT-SDHSEDCAVEDV 178

BLAST of Lag0009571 vs. NCBI nr
Match: KAA0054414.1 (putative dehydration-responsive element-binding protein 2H [Cucumis melo var. makuwa] >TYJ96841.1 putative dehydration-responsive element-binding protein 2H [Cucumis melo var. makuwa])

HSP 1 Score: 315.1 bits (806), Expect = 3.9e-82
Identity = 162/180 (90.00%), Postives = 170/180 (94.44%), Query Frame = 0

Query: 1   MPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNEEAKLTRKVPAKGSKKGCMKGKGGP 60
           MPKL KLQTR PGSLSVAETLAKWKDYNDHLDSC +EAKL R+VPAKGSKKGCMKGKGGP
Sbjct: 1   MPKLGKLQTRLPGSLSVAETLAKWKDYNDHLDSCTDEAKLARRVPAKGSKKGCMKGKGGP 60

Query: 61  ENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIDAALAYDEAARAMYGSLARL 120
           EN+RCNYRGVRQRTWGKWVAEIRAP RGSRLWLGTFP+AIDAALAYDEAARAMYG+LARL
Sbjct: 61  ENMRCNYRGVRQRTWGKWVAEIRAPKRGSRLWLGTFPTAIDAALAYDEAARAMYGNLARL 120

Query: 121 NFPNISIPTLLKEKEPSTKDSP-EVKRSSISSLGSTSLSLSSESTITSSDHSEDCAGEDV 180
           NFPN+SIPTLLKEKE STKDSP E+KRSS+S LGSTSLSLSSESTIT SDHSEDCA EDV
Sbjct: 121 NFPNVSIPTLLKEKELSTKDSPDEIKRSSLSFLGSTSLSLSSESTIT-SDHSEDCAVEDV 179

BLAST of Lag0009571 vs. NCBI nr
Match: XP_023513197.1 (dehydration-responsive element-binding protein 2A-like [Cucurbita pepo subsp. pepo] >XP_023513198.1 dehydration-responsive element-binding protein 2A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.9 bits (803), Expect = 8.8e-82
Identity = 164/182 (90.11%), Postives = 172/182 (94.51%), Query Frame = 0

Query: 1   MPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNEEAKLTRKVPAKGSKKGCMKGKGGP 60
           MPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCN+EAKLTR+VPAKGSKKGCMKGKGGP
Sbjct: 1   MPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNDEAKLTRRVPAKGSKKGCMKGKGGP 60

Query: 61  ENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIDAALAYDEAARAMYGSLARL 120
           EN+RCNYRGVRQRTWGKWVAEIRAP RGSRLWLGTFP+AIDAALAYDEAARAMYG+ ARL
Sbjct: 61  ENMRCNYRGVRQRTWGKWVAEIRAPKRGSRLWLGTFPTAIDAALAYDEAARAMYGTSARL 120

Query: 121 NFPNISIPTLLKEKE-PSTKD--SPEVKRSSISSLGSTSLSLSSESTITSSDHSEDCAGE 180
           NFPNISIPTLLKEKE P TK+  SPE+KRSSISSLGSTSLSLS ESTIT SDHSE+ A E
Sbjct: 121 NFPNISIPTLLKEKESPPTKESPSPEIKRSSISSLGSTSLSLSYESTIT-SDHSEEGAAE 180

BLAST of Lag0009571 vs. NCBI nr
Match: XP_022986391.1 (dehydration-responsive element-binding protein 2A-like [Cucurbita maxima] >XP_022986392.1 dehydration-responsive element-binding protein 2A-like [Cucurbita maxima])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 163/182 (89.56%), Postives = 172/182 (94.51%), Query Frame = 0

Query: 1   MPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNEEAKLTRKVPAKGSKKGCMKGKGGP 60
           MPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCN+EAKLTR+VPAKGSKKGCMKGKGGP
Sbjct: 1   MPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCNDEAKLTRRVPAKGSKKGCMKGKGGP 60

Query: 61  ENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIDAALAYDEAARAMYGSLARL 120
           EN+RCNYRGVRQRTWGKWVAEIRAP RGSRLWLGTFP+AIDAALAYDEAARAMYG+ ARL
Sbjct: 61  ENMRCNYRGVRQRTWGKWVAEIRAPKRGSRLWLGTFPTAIDAALAYDEAARAMYGTSARL 120

Query: 121 NFPNISIPTLLKEKE-PSTKD--SPEVKRSSISSLGSTSLSLSSESTITSSDHSEDCAGE 180
           NFPNISIPTLLKEKE P TK+  SPE+KRSS+SSLGSTSLSLS ESTIT SDHSE+ A E
Sbjct: 121 NFPNISIPTLLKEKESPPTKESPSPEIKRSSVSSLGSTSLSLSYESTIT-SDHSEEGAAE 180

BLAST of Lag0009571 vs. ExPASy Swiss-Prot
Match: O82132 (Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana OX=3702 GN=DREB2A PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.8e-41
Identity = 86/140 (61.43%), Postives = 106/140 (75.71%), Query Frame = 0

Query: 6   KLQTRRPGSLSVAETLAKWKDYNDHLDSCNEEAKLTRKVPAKGSKKGCMKGKGGPENLRC 65
           K ++R  G+ +VAE L +WK+YN+ ++   E +   RKVPAKGSKKGCMKGKGGPEN RC
Sbjct: 22  KSRSRGDGT-TVAERLKRWKEYNETVE---EVSTKKRKVPAKGSKKGCMKGKGGPENSRC 81

Query: 66  NYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIDAALAYDEAARAMYGSLARLNFPN- 125
           ++RGVRQR WGKWVAEIR PNRGSRLWLGTFP+A +AA AYDEAA+AMYG LARLNFP  
Sbjct: 82  SFRGVRQRIWGKWVAEIREPNRGSRLWLGTFPTAQEAASAYDEAAKAMYGPLARLNFPRS 141

Query: 126 --ISIPTLLKEKEPSTKDSP 143
               + +   + E  T ++P
Sbjct: 142 DASEVTSTSSQSEVCTVETP 157

BLAST of Lag0009571 vs. ExPASy Swiss-Prot
Match: O82133 (Dehydration-responsive element-binding protein 2B OS=Arabidopsis thaliana OX=3702 GN=DREB2B PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.6e-40
Identity = 83/124 (66.94%), Postives = 96/124 (77.42%), Query Frame = 0

Query: 2   PKLEKLQTRRPGSLSVAETLAKWKDYNDHLD--SCNEEAKLTRKVPAKGSKKGCMKGKGG 61
           PK  K +  R G L+VA+ L KWK+YN+ ++  +  E  K  RKVPAKGSKKGCMKGKGG
Sbjct: 12  PKKRKSRA-RAGGLTVADRLKKWKEYNEIVEASAVKEGEKPKRKVPAKGSKKGCMKGKGG 71

Query: 62  PENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIDAALAYDEAARAMYGSLAR 121
           P+N  C++RGVRQR WGKWVAEIR P  G+RLWLGTFP+A  AA AYDEAA AMYGSLAR
Sbjct: 72  PDNSHCSFRGVRQRIWGKWVAEIREPKIGTRLWLGTFPTAEKAASAYDEAATAMYGSLAR 131

Query: 122 LNFP 124
           LNFP
Sbjct: 132 LNFP 134

BLAST of Lag0009571 vs. ExPASy Swiss-Prot
Match: A2WL19 (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. indica OX=39946 GN=DREB2A PE=3 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 2.5e-39
Identity = 87/152 (57.24%), Postives = 104/152 (68.42%), Query Frame = 0

Query: 3   KLEKLQTRR--PGSLSVAETLAKWKDYNDHLDSCNEEAKLTRKVPAKGSKKGCMKGKGGP 62
           ++ K +TRR   G  S+AET+  WK+ N  L    +E   +RK PAKGSKKGCM GKGGP
Sbjct: 14  QVRKKRTRRKSDGPDSIAETIKWWKEQNQKL----QEENSSRKAPAKGSKKGCMAGKGGP 73

Query: 63  ENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIDAALAYDEAARAMYGSLARL 122
           EN  C YRGVRQRTWGKWVAEIR PNRG RLWLG+FP+A++AA AYDEAARAMYG  AR+
Sbjct: 74  ENSNCAYRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARV 133

Query: 123 NFPN---------ISIPTLLKEKEPSTKDSPE 144
           NF +          S P+L+    P+T  S E
Sbjct: 134 NFADNSTDANSGCTSAPSLMMSNGPATIPSDE 161

BLAST of Lag0009571 vs. ExPASy Swiss-Prot
Match: Q0JQF7 (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. japonica OX=39947 GN=DREB2A PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.5e-39
Identity = 87/152 (57.24%), Postives = 104/152 (68.42%), Query Frame = 0

Query: 3   KLEKLQTRR--PGSLSVAETLAKWKDYNDHLDSCNEEAKLTRKVPAKGSKKGCMKGKGGP 62
           ++ K +TRR   G  S+AET+  WK+ N  L    +E   +RK PAKGSKKGCM GKGGP
Sbjct: 14  QVRKKRTRRKSDGPDSIAETIKWWKEQNQKL----QEENSSRKAPAKGSKKGCMAGKGGP 73

Query: 63  ENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIDAALAYDEAARAMYGSLARL 122
           EN  C YRGVRQRTWGKWVAEIR PNRG RLWLG+FP+A++AA AYDEAARAMYG  AR+
Sbjct: 74  ENSNCAYRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARV 133

Query: 123 NFPN---------ISIPTLLKEKEPSTKDSPE 144
           NF +          S P+L+    P+T  S E
Sbjct: 134 NFADNSTDANSGCTSAPSLMMSNGPATIPSDE 161

BLAST of Lag0009571 vs. ExPASy Swiss-Prot
Match: Q5W6R4 (Dehydration-responsive element-binding protein 2B OS=Oryza sativa subsp. japonica OX=39947 GN=DREB2B PE=2 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 6.2e-38
Identity = 92/205 (44.88%), Postives = 123/205 (60.00%), Query Frame = 0

Query: 1   MPKLEKLQTRRP-----GSLSVAETLAKWKDYNDHLDSCNEEAKLTRKVPAKGSKKGCMK 60
           MP ++  + +RP     G  SVAET+ +W + N+  +   +  K  RK PAKGSKKGCMK
Sbjct: 18  MPPVQPGRKKRPRRSRDGPTSVAETIKRWAELNNQQELDPQGPKKARKAPAKGSKKGCMK 77

Query: 61  GKGGPENLRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPSAIDAALAYDEAARAMYG 120
           GKGGPEN RC++RGVRQRTWGKWVAEIR PN+ SRLWLGTFP+A  AA AYDEAARAMYG
Sbjct: 78  GKGGPENTRCDFRGVRQRTWGKWVAEIREPNQQSRLWLGTFPTAEAAACAYDEAARAMYG 137

Query: 121 SLARLNF-----PNISIPTLL------------------KEKEPSTKDSPEVKRSSISSL 178
            +AR NF     P  S+   L                     + ++ D  +V    +S+ 
Sbjct: 138 PMARTNFGQHHAPAASVQVALAAVKCALPGGGLTASKSRTSTQGASADVQDVLTGGLSAC 197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038900306.15.3e-8793.30putative dehydration-responsive element-binding protein 2H [Benincasa hispida][more]
XP_022140755.11.3e-8592.18putative dehydration-responsive element-binding protein 2H [Momordica charantia][more]
KAA0054414.13.9e-8290.00putative dehydration-responsive element-binding protein 2H [Cucumis melo var. ma... [more]
XP_023513197.18.8e-8290.11dehydration-responsive element-binding protein 2A-like [Cucurbita pepo subsp. pe... [more]
XP_022986391.11.1e-8189.56dehydration-responsive element-binding protein 2A-like [Cucurbita maxima] >XP_02... [more]
Match NameE-valueIdentityDescription
O821327.8e-4161.43Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana OX=370... [more]
O821336.6e-4066.94Dehydration-responsive element-binding protein 2B OS=Arabidopsis thaliana OX=370... [more]
A2WL192.5e-3957.24Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. indica ... [more]
Q0JQF72.5e-3957.24Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. japonic... [more]
Q5W6R46.2e-3844.88Dehydration-responsive element-binding protein 2B OS=Oryza sativa subsp. japonic... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 89..105
score: 57.65
coord: 67..78
score: 72.58
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 66..129
e-value: 8.8E-36
score: 134.9
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 65..115
e-value: 7.8E-14
score: 51.7
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 66..123
score: 21.285095
IPR001471AP2/ERF domainCDDcd00018AP2coord: 65..124
e-value: 2.94982E-31
score: 105.817
IPR036955AP2/ERF domain superfamilyGENE3D3.30.730.10AP2/ERF domaincoord: 66..125
e-value: 4.1E-25
score: 89.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..170
NoneNo IPR availablePANTHERPTHR31241:SF62DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2Ccoord: 6..169
NoneNo IPR availablePANTHERPTHR31241DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2Ccoord: 6..169
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 66..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0009571.1Lag0009571.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity