Lag0009563 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0009563
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	B box-type domain-containing protein
Location	chr9: 40373306 .. 40373683 (-)
RNA-Seq Expression	Lag0009563
Synteny	Lag0009563

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTAAAGGTGTGGGAGAGGGAAACCACGGTGGTTGCCGCCAGTTCCCGGTGGCTGAGAAGGGTGTTTCGGCGGAGGCGGAGGTGATGTGTGAGCTCTGCAACATGAGAGCTTCATTGTACTGCCAAGCGGATGATGCTTATCTATGTAGGAAATGTGACAAATGGGTTCATGGGGCTAATTTCTTAGCGCAGAGGCATATTAGGTGCATTCTCTGTAATGTTTGCCAAAACCTTACGCAAAAATACCTCATGGGAACTTCTACTGAGGTCCTCCTCCCCACCATCGTCACTAGCACCGAAGCTAACCACTGTAACAATGGCACTCTTAACAAATGTTCTTCAGTAATGCTCAAAAGGCCTTTTCTCTTTTTGTGA

mRNA sequence

ATGTGTAAAGGTGTGGGAGAGGGAAACCACGGTGGTTGCCGCCAGTTCCCGGTGGCTGAGAAGGGTGTTTCGGCGGAGGCGGAGGTGATGTGTGAGCTCTGCAACATGAGAGCTTCATTGTACTGCCAAGCGGATGATGCTTATCTATGTAGGAAATGTGACAAATGGGTTCATGGGGCTAATTTCTTAGCGCAGAGGCATATTAGGTGCATTCTCTGTAATGTTTGCCAAAACCTTACGCAAAAATACCTCATGGGAACTTCTACTGAGGTCCTCCTCCCCACCATCGTCACTAGCACCGAAGCTAACCACTGTAACAATGGCACTCTTAACAAATGTTCTTCAGTAATGCTCAAAAGGCCTTTTCTCTTTTTGTGA

Coding sequence (CDS)

ATGTGTAAAGGTGTGGGAGAGGGAAACCACGGTGGTTGCCGCCAGTTCCCGGTGGCTGAGAAGGGTGTTTCGGCGGAGGCGGAGGTGATGTGTGAGCTCTGCAACATGAGAGCTTCATTGTACTGCCAAGCGGATGATGCTTATCTATGTAGGAAATGTGACAAATGGGTTCATGGGGCTAATTTCTTAGCGCAGAGGCATATTAGGTGCATTCTCTGTAATGTTTGCCAAAACCTTACGCAAAAATACCTCATGGGAACTTCTACTGAGGTCCTCCTCCCCACCATCGTCACTAGCACCGAAGCTAACCACTGTAACAATGGCACTCTTAACAAATGTTCTTCAGTAATGCTCAAAAGGCCTTTTCTCTTTTTGTGA

Protein sequence

MCKGVGEGNHGGCRQFPVAEKGVSAEAEVMCELCNMRASLYCQADDAYLCRKCDKWVHGANFLAQRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIVTSTEANHCNNGTLNKCSSVMLKRPFLFL

Homology

[Close]

BLAST of Lag0009563 vs. NCBI nr
Match: KGN63276.1 (hypothetical protein Csa_022167 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 1.2e-50
Identity = 104/133 (78.20%), Postives = 108/133 (81.20%), Query Frame = 0


Query: 1   MCKGVGEGNHG------GCRQFPVAEKG-VSAEAEVMCELCNMRASLYCQADDAYLCRKC 60
           MC+GV EGNHG      GCRQ PV +KG VSA   VMCELCN +ASLYCQADDAYLCRKC
Sbjct: 1   MCRGVEEGNHGHAHGRDGCRQSPVIQKGVVSAAGVVMCELCNSKASLYCQADDAYLCRKC 60

Query: 61  DKWVHGANFLAQRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIVTSTEANHC-NNGTLNK 120
           DKWVHGANFLA RHIRCILCNVCQNLTQKYLMGTSTEVLLPTI+   EAN C NNG  N 
Sbjct: 61  DKWVHGANFLALRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIIACAEANDCNNNGNRNP 120

Query: 121 CSSVMLKRPFLFL 126
           C SVM KRPFLFL
Sbjct: 121 CCSVMFKRPFLFL 133

[Close]

BLAST of Lag0009563 vs. NCBI nr
Match: KAA0042428.1 (Zinc finger protein CONSTANS-LIKE 14 [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 2.8e-50
Identity = 104/139 (74.82%), Postives = 111/139 (79.86%), Query Frame = 0


Query: 1   MCKGVGEGNH------------GGCRQFPVAEKG-VSAEAEVMCELCNMRASLYCQADDA 60
           MC+GV EGNH            GGCRQ PV +KG VSA   +MCELCN +ASLYCQADDA
Sbjct: 1   MCRGVEEGNHGHRHGHSHGHGRGGCRQSPVIQKGDVSAAGVLMCELCNSKASLYCQADDA 60

Query: 61  YLCRKCDKWVHGANFLAQRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIVTSTEANHC-N 120
           YLCRKCDKWVHGANFLA RHIRCILC+VCQNLTQKYLMGTSTEVLLPTI+  T+AN C N
Sbjct: 61  YLCRKCDKWVHGANFLALRHIRCILCDVCQNLTQKYLMGTSTEVLLPTIIACTKANDCNN 120

Query: 121 NGTLNKCSSVMLKRPFLFL 126
           NG LN C SVMLKRPFLFL
Sbjct: 121 NGNLNTCCSVMLKRPFLFL 139

[Close]

BLAST of Lag0009563 vs. NCBI nr
Match: TYK13446.1 (Zinc finger protein CONSTANS-LIKE 14 [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 2.8e-50
Identity = 104/139 (74.82%), Postives = 111/139 (79.86%), Query Frame = 0


Query: 1   MCKGVGEGNH------------GGCRQFPVAEKG-VSAEAEVMCELCNMRASLYCQADDA 60
           MC+GV EGNH            GGCRQ PV +KG VSA   +MCELCN +ASLYCQADDA
Sbjct: 1   MCRGVEEGNHGHGHGHSHGHGRGGCRQSPVIQKGDVSAAGVLMCELCNSKASLYCQADDA 60

Query: 61  YLCRKCDKWVHGANFLAQRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIVTSTEANHC-N 120
           YLCRKCDKWVHGANFLA RHIRCILC+VCQNLTQKYLMGTSTEVLLPTI+  T+AN C N
Sbjct: 61  YLCRKCDKWVHGANFLALRHIRCILCDVCQNLTQKYLMGTSTEVLLPTIIACTKANDCNN 120

Query: 121 NGTLNKCSSVMLKRPFLFL 126
           NG LN C SVMLKRPFLFL
Sbjct: 121 NGNLNTCCSVMLKRPFLFL 139

[Close]

BLAST of Lag0009563 vs. NCBI nr
Match: XP_022986418.1 (B-box domain protein 30-like [Cucurbita maxima])

HSP 1 Score: 186.4 bits (472), Expect = 1.5e-43
Identity = 99/130 (76.15%), Postives = 104/130 (80.00%), Query Frame = 0


Query: 1   MCKGVGE-GNHGGCRQFPVAEK-GVSAE-AEVMCELCNMRASLYCQADDAYLCRKCDKWV 60
           MC+GV E  +HGGCR F  AEK G SAE A VMCELCN RASLYCQADDAYLCRKCDKWV
Sbjct: 34  MCRGVVEQRSHGGCRDFSAAEKGGDSAEGAVVMCELCNSRASLYCQADDAYLCRKCDKWV 93

Query: 61  HGANFLAQRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIVTSTE-ANHCN-NGTLNKCSS 120
           HGANFLA RHIRCILC+VCQNLT KYLMGTST+VLLPTIVT  +  N CN N  LN C S
Sbjct: 94  HGANFLALRHIRCILCSVCQNLTHKYLMGTSTQVLLPTIVTCDQPPNDCNGNRNLNTCCS 153

Query: 121 VMLKRPFLFL 126
           V LK P LFL
Sbjct: 154 VRLKTPVLFL 163

[Close]

BLAST of Lag0009563 vs. NCBI nr
Match: KAG6570870.1 (B-box domain protein 31, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010718.1 B-box domain protein 31, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.7 bits (470), Expect = 2.5e-43
Identity = 98/130 (75.38%), Postives = 105/130 (80.77%), Query Frame = 0


Query: 1   MCKGVGE-GNHGGCRQFPVAEK-GVSAE-AEVMCELCNMRASLYCQADDAYLCRKCDKWV 60
           MC+GV E  +HGGCR+F  AEK G SAE A VMCELC+ RASLYCQADDAYLCRKCDKWV
Sbjct: 1   MCRGVVEQRSHGGCREFSAAEKGGDSAEGAVVMCELCDSRASLYCQADDAYLCRKCDKWV 60

Query: 61  HGANFLAQRHIRCILCNVCQNLTQKYLMGTSTEVLLPTIVTSTE-ANHCN-NGTLNKCSS 120
           HGANFLA RHIRCILCNVCQNLT KYLMGTST+VLLPTIVT  +  N CN N  L+ C S
Sbjct: 61  HGANFLALRHIRCILCNVCQNLTHKYLMGTSTQVLLPTIVTCNQPPNDCNDNRNLSTCCS 120

Query: 121 VMLKRPFLFL 126
           V LK P LFL
Sbjct: 121 VRLKTPVLFL 130

[Close]

BLAST of Lag0009563 vs. ExPASy Swiss-Prot
Match: Q1G3I2 (B-box domain protein 30 OS=Arabidopsis thaliana OX=3702 GN=MIP1A PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-20
Identity = 46/101 (45.54%), Postives = 68/101 (67.33%), Query Frame = 0


Query: 1  MCKGVGE-----GNHGGCRQFPVAEKGVSAEAEVMCELCNMRASLYCQADDAYLCRKCDK 60
          MC+G  +      ++GGC++        S +A V CELC   A++YC+AD A+LCRKCD+
Sbjct: 1  MCRGFEKEEERRSDNGGCQRLCTE----SHKAPVSCELCGENATVYCEADAAFLCRKCDR 60

Query: 61 WVHGANFLAQRHIRCILCNVCQNLTQKYLMGTSTEVLLPTI 97
          WVH ANFLA+RH+R ++C  C+ LT++ L+G +  V+LP I
Sbjct: 61 WVHSANFLARRHLRRVICTTCRKLTRRCLVGDNFNVVLPEI 97

[Close]

BLAST of Lag0009563 vs. ExPASy Swiss-Prot
Match: Q9LRM4 (B-box domain protein 31 OS=Arabidopsis thaliana OX=3702 GN=MIP1B PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.1e-20
Identity = 54/131 (41.22%), Postives = 74/131 (56.49%), Query Frame = 0


Query: 1   MCKGVG-----EGNHGGCRQFPVAEKGVSAEAEVMCELCNMRASLYCQADDAYLCRKCDK 60
           MC+G+        + GGCR              V CELC+  AS++C+AD A+LCRKCD+
Sbjct: 1   MCRGLNNEESRRSDGGGCRSL-----CTRPSVPVRCELCDGDASVFCEADSAFLCRKCDR 60

Query: 61  WVHGANFLAQRHIRCILCNVCQNLTQKYLMGT-STEVLLPTIVTSTEANHCNNGTLNKCS 120
           WVHGANFLA RH+R +LC  CQ LT++ L+G     V+LP++ T  E         N+  
Sbjct: 61  WVHGANFLAWRHVRRVLCTSCQKLTRRCLVGDHDFHVVLPSVTTVGETT-----VENRSE 120

Query: 121 SVMLKRPFLFL 126
               + PF+FL
Sbjct: 121 QDNHEVPFVFL 121

[Close]

BLAST of Lag0009563 vs. ExPASy Swiss-Prot
Match: Q9LJB7 (B-box zinc finger protein 32 OS=Arabidopsis thaliana OX=3702 GN=BBX32 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-11
Identity = 32/85 (37.65%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 31  CELCNMRASLYCQADDAYLCRKCDKWVHGANFLAQRHIRCILCNVCQNLTQKYLMGTSTE 90
           CELC   A L+C AD A+LCR CD   H +NFL  RH R ++C  C++LTQ ++ G    
Sbjct: 5   CELCGAEADLHCAADSAFLCRSCDAKFHASNFLFARHFRRVICPNCKSLTQNFVSG---- 64

Query: 91  VLLPTIVTSTEANHCNNGTLNKCSS 116
              P +        C+  + + C S
Sbjct: 65  ---PLLPWPPRTTCCSESSSSSCCS 82

[Close]

BLAST of Lag0009563 vs. ExPASy Swiss-Prot
Match: Q9C9F4 (Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana OX=3702 GN=At1g68190 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.0e-08
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 28 EVMCELCN-MRASLYCQADDAYLCRKCDKWVHGANFLAQRHIRCILCNVCQN 79
          E +CE C   RA +YC AD A LC  CD  VH AN L+ RH+R +LC+ C+N
Sbjct: 11 ERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKN 62

[Close]

BLAST of Lag0009563 vs. ExPASy Swiss-Prot
Match: O22800 (Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana OX=3702 GN=COL14 PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-07
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 24 SAEAEVMCELCNMR-ASLYCQADDAYLCRKCDKWVHGANFLAQRHIRCILCNVC 77
          + E+ V CE C  R A L+C+AD A LC  CD+ VH AN L+++H+R  +C+ C
Sbjct: 5  TTESVVACEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNC 58

The following BLAST results are available for this feature:

BLAST of Lag0009563 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63276.1	1.2e-50	78.20	hypothetical protein Csa_022167 [Cucumis sativus]	[more]
KAA0042428.1	2.8e-50	74.82	Zinc finger protein CONSTANS-LIKE 14 [Cucumis melo var. makuwa]	[more]
TYK13446.1	2.8e-50	74.82	Zinc finger protein CONSTANS-LIKE 14 [Cucumis melo var. makuwa]	[more]
XP_022986418.1	1.5e-43	76.15	B-box domain protein 30-like [Cucurbita maxima]	[more]
KAG6570870.1	2.5e-43	75.38	B-box domain protein 31, partial [Cucurbita argyrosperma subsp. sororia] >KAG701...	[more]

BLAST of Lag0009563 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3I2	1.8e-20	45.54	B-box domain protein 30 OS=Arabidopsis thaliana OX=3702 GN=MIP1A PE=1 SV=1	[more]
Q9LRM4	9.1e-20	41.22	B-box domain protein 31 OS=Arabidopsis thaliana OX=3702 GN=MIP1B PE=2 SV=1	[more]
Q9LJB7	2.0e-11	37.65	B-box zinc finger protein 32 OS=Arabidopsis thaliana OX=3702 GN=BBX32 PE=1 SV=1	[more]
Q9C9F4	8.0e-08	51.92	Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana OX=3702 GN=At1g68...	[more]
O22800	2.3e-07	46.30	Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana OX=3702 GN=COL14 PE...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 26..72 e-value: 1.7E-7 score: 40.9
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 28..59 e-value: 4.1E-5 score: 23.7
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 26..72 score: 8.816232
None	No IPR available	PANTHER	PTHR31717:SF100	B-BOX ZINC FINGER PROTEIN 29	coord: 20..103
None	No IPR available	PANTHER	PTHR31717	ZINC FINGER PROTEIN CONSTANS-LIKE 10	coord: 20..103
None	No IPR available	CDD	cd19821	Bbox1_BBX-like	coord: 31..70 e-value: 1.1481E-13 score: 58.8483

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0009563.1	Lag0009563.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding