Lag0009540 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0009540
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionThiF domain-containing protein
Locationchr9: 40140454 .. 40140849 (-)
RNA-Seq ExpressionLag0009540
SyntenyLag0009540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGCAGGCTTCGATTCTCGCCAAAATCATCTGCAAATCGGACGGAACCATTCCACAAGTACTTGAAGCCCGGCGCCTTAGCGCAGTTGCGAGACTCGAGAATCAGCGCTAGATCGTACAGATTCAACTCGCTCGCTCAGATCTACCTCCGCCGTACTTCTCCTCTGGAATCGTCTCCACTTTCCACTACCGGTCAATCGGAGATTGACATGGTCGACGACTTCCCTTCAATGGCTGGGAGGGTTTATAGTAGGCCATTGTGCCTTAAGAGGAAGAAGCTCGCAGCGATTAAGTCTACATGGTTTCCAAGCCCTAATTTGCAGACTCCAACTCCCGATTTAACTCGAGACCCGATTATTGATGTGTTTAATAGCGATGTTTCTGCGCATTGA

mRNA sequence

ATGAATCGCAGGCTTCGATTCTCGCCAAAATCATCTGCAAATCGGACGGAACCATTCCACAAGTACTTGAAGCCCGGCGCCTTAGCGCAGTTGCGAGACTCGAGAATCAGCGCTAGATCGTACAGATTCAACTCGCTCGCTCAGATCTACCTCCGCCGTACTTCTCCTCTGGAATCGTCTCCACTTTCCACTACCGGTCAATCGGAGATTGACATGGTCGACGACTTCCCTTCAATGGCTGGGAGGGTTTATAGTAGGCCATTGTGCCTTAAGAGGAAGAAGCTCGCAGCGATTAAGTCTACATGGTTTCCAAGCCCTAATTTGCAGACTCCAACTCCCGATTTAACTCGAGACCCGATTATTGATGTGTTTAATAGCGATGTTTCTGCGCATTGA

Coding sequence (CDS)

ATGAATCGCAGGCTTCGATTCTCGCCAAAATCATCTGCAAATCGGACGGAACCATTCCACAAGTACTTGAAGCCCGGCGCCTTAGCGCAGTTGCGAGACTCGAGAATCAGCGCTAGATCGTACAGATTCAACTCGCTCGCTCAGATCTACCTCCGCCGTACTTCTCCTCTGGAATCGTCTCCACTTTCCACTACCGGTCAATCGGAGATTGACATGGTCGACGACTTCCCTTCAATGGCTGGGAGGGTTTATAGTAGGCCATTGTGCCTTAAGAGGAAGAAGCTCGCAGCGATTAAGTCTACATGGTTTCCAAGCCCTAATTTGCAGACTCCAACTCCCGATTTAACTCGAGACCCGATTATTGATGTGTTTAATAGCGATGTTTCTGCGCATTGA

Protein sequence

MNRRLRFSPKSSANRTEPFHKYLKPGALAQLRDSRISARSYRFNSLAQIYLRRTSPLESSPLSTTGQSEIDMVDDFPSMAGRVYSRPLCLKRKKLAAIKSTWFPSPNLQTPTPDLTRDPIIDVFNSDVSAH
Homology
BLAST of Lag0009540 vs. NCBI nr
Match: XP_038902395.1 (uncharacterized protein LOC120089036 [Benincasa hispida])

HSP 1 Score: 215.3 bits (547), Expect = 3.1e-52
Identity = 105/131 (80.15%), Postives = 119/131 (90.84%), Query Frame = 0

Query: 1   MNRRLRFSPKSSANRTEPFHKYLKPGALAQLRDSRISARSYRFNSLAQIYLRRTSPLESS 60
           M R+L+FSPK  A+RTE FHKYLKPGALAQ+RDS+ISA+ YRFNSL+QIYLRRTSPL SS
Sbjct: 1   MKRKLKFSPKPYADRTEQFHKYLKPGALAQMRDSQISAKWYRFNSLSQIYLRRTSPLPSS 60

Query: 61  PLSTTGQSEIDMVDDFPSMAGRVYSRPLCLKRKKLAAIKSTWFPSPNLQTPTPDLTRDPI 120
           PLST GQSEID+VDDFPS+AGR Y  P CLKRKKLAAIK+TWFPSPNLQTPT D+TRDP+
Sbjct: 61  PLSTIGQSEIDVVDDFPSLAGRGYG-PFCLKRKKLAAIKATWFPSPNLQTPTTDITRDPV 120

Query: 121 IDVFNSDVSAH 132
           +DVFNSDV+AH
Sbjct: 121 VDVFNSDVAAH 130

BLAST of Lag0009540 vs. NCBI nr
Match: XP_023513131.1 (uncharacterized protein LOC111777660 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.4 bits (529), Expect = 3.8e-50
Identity = 106/131 (80.92%), Postives = 116/131 (88.55%), Query Frame = 0

Query: 1   MNRRLRFSPKSSANRTEPFHKYLKPGALAQLRDSRISARSYRFNSLAQIYLRRTSPLESS 60
           MNRR++FS K  ANRTE FHKYLKPGALA++RDSRISARSYR+NSL+QIYLRRT+ LESS
Sbjct: 1   MNRRVQFSHKQRANRTEQFHKYLKPGALAKMRDSRISARSYRYNSLSQIYLRRTASLESS 60

Query: 61  PLSTTGQSEIDMVDDFPSMAGRVYSRPLCLKRKKLAAIKSTWFPSPNLQTPTPDLTRDPI 120
           PLS  GQSEID VDDFPS+AGRVY  PLCLKRKK A IKSTWFPSPNLQTPT DLT +PI
Sbjct: 61  PLSAIGQSEID-VDDFPSLAGRVYG-PLCLKRKKFAGIKSTWFPSPNLQTPTTDLTGEPI 120

Query: 121 IDVFNSDVSAH 132
           ID FNSDV+AH
Sbjct: 121 IDAFNSDVAAH 129

BLAST of Lag0009540 vs. NCBI nr
Match: XP_022986202.1 (uncharacterized protein LOC111484017 [Cucurbita maxima])

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-47
Identity = 101/131 (77.10%), Postives = 115/131 (87.79%), Query Frame = 0

Query: 1   MNRRLRFSPKSSANRTEPFHKYLKPGALAQLRDSRISARSYRFNSLAQIYLRRTSPLESS 60
           MNRR++ S K  ANRTE FHK+LKPGALA++RDSRISARSYR+NSL+QI+LRRT+ LESS
Sbjct: 1   MNRRVQLSHKQRANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESS 60

Query: 61  PLSTTGQSEIDMVDDFPSMAGRVYSRPLCLKRKKLAAIKSTWFPSPNLQTPTPDLTRDPI 120
           PLS  GQSEID VDDFPS++GRVY  PLCLKRKKLA IK+TWFPSPNLQTPT DLT D I
Sbjct: 61  PLSAIGQSEID-VDDFPSLSGRVYG-PLCLKRKKLAGIKTTWFPSPNLQTPTTDLTGDHI 120

Query: 121 IDVFNSDVSAH 132
           +D FNSDV+AH
Sbjct: 121 VDAFNSDVAAH 129

BLAST of Lag0009540 vs. NCBI nr
Match: XP_022944248.1 (uncharacterized protein LOC111448755 [Cucurbita moschata] >KAG6570884.1 hypothetical protein SDJN03_29799, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010732.1 hypothetical protein SDJN02_27528, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198.4 bits (503), Expect = 3.9e-47
Identity = 101/131 (77.10%), Postives = 114/131 (87.02%), Query Frame = 0

Query: 1   MNRRLRFSPKSSANRTEPFHKYLKPGALAQLRDSRISARSYRFNSLAQIYLRRTSPLESS 60
           MNRR++FS K  ANRTE FHKYLKPGALA++RDSRISAR YR+NSL+QIYLRRT+  ESS
Sbjct: 1   MNRRVQFSHKQRANRTEQFHKYLKPGALAKIRDSRISARLYRYNSLSQIYLRRTASPESS 60

Query: 61  PLSTTGQSEIDMVDDFPSMAGRVYSRPLCLKRKKLAAIKSTWFPSPNLQTPTPDLTRDPI 120
           PLS+ GQSEID VDDFPS++GRVY  PLCLKRKK + IKSTWFPSPNLQTPT DL+ D I
Sbjct: 61  PLSSIGQSEID-VDDFPSLSGRVYG-PLCLKRKKFSGIKSTWFPSPNLQTPTADLSGDSI 120

Query: 121 IDVFNSDVSAH 132
           ID FNSDV+AH
Sbjct: 121 IDAFNSDVAAH 129

BLAST of Lag0009540 vs. NCBI nr
Match: XP_030481732.1 (uncharacterized protein LOC115698726 [Cannabis sativa] >KAF4382652.1 hypothetical protein F8388_015480 [Cannabis sativa])

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-26
Identity = 79/132 (59.85%), Postives = 94/132 (71.21%), Query Frame = 0

Query: 1   MNRRLRFSPKSSANRTEPFHKYLKPGALAQLRDSRISARSYRFNSLAQIYLRRTSPLESS 60
           MNRR R   +SS NR EPF KYLKPGALAQ+RDSRISARS+RF S+AQI   R+SP  SS
Sbjct: 1   MNRRTRSLHRSSPNRAEPFLKYLKPGALAQIRDSRISARSHRFLSIAQI---RSSP-PSS 60

Query: 61  PLSTTGQSEIDMVDDFPSMAGRVYSRPLCLKRKKLAAIKSTWFPSPNLQTPTPDLTRDPI 120
           P ST GQS +  +D FP  +GR++  P C +RKKL A KS  FPS N  +P  D   DPI
Sbjct: 61  PSSTPGQSTVIAMDGFPCFSGRMFV-PRCPQRKKLVASKSVLFPSQNPSSPVLD-AADPI 120

Query: 121 IDVF-NSDVSAH 132
           IDVF +SD++AH
Sbjct: 121 IDVFSSSDIAAH 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038902395.13.1e-5280.15uncharacterized protein LOC120089036 [Benincasa hispida][more]
XP_023513131.13.8e-5080.92uncharacterized protein LOC111777660 [Cucurbita pepo subsp. pepo][more]
XP_022986202.11.8e-4777.10uncharacterized protein LOC111484017 [Cucurbita maxima][more]
XP_022944248.13.9e-4777.10uncharacterized protein LOC111448755 [Cucurbita moschata] >KAG6570884.1 hypothet... [more]
XP_030481732.11.3e-2659.85uncharacterized protein LOC115698726 [Cannabis sativa] >KAF4382652.1 hypothetica... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35495OS06G0679600 PROTEINcoord: 1..131
NoneNo IPR availablePANTHERPTHR35495:SF10SUBFAMILY NOT NAMEDcoord: 1..131

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0009540.1Lag0009540.1mRNA