Lag0009485 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0009485
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Nuclear cap-binding protein subunit 2
Location	chr9: 39605685 .. 39606596 (+)
RNA-Seq Expression	Lag0009485
Synteny	Lag0009485

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATGTGACACACATCTCAAACTTTTGTCAGTTTAATATTATAGCTCATTCATATGTAATTGCTTTCTAAAAAATGTTAGTTCTTTGACACCTCAGTTTAAATTTCTCATTTCTGTTTAGTTTCCTTAATTTATTAACGTAGAGGTGGCTATGGAAAGCTAGTTCAGAAAGAGTTAGAAGCACAGAGGCAGCTTGTGGATTATGGTACTGGTTCACTAGGCTCTATGCAGCCAGTCATGCCTCAGTGTAAGTTGCTACGGGGAATGCTATGAGAATATATTATATCTAAACATTATTAATTTTGCAAGCCTTTACTTCCATGTTTTTCCTTTTCTTCTGCAGATGGAAAACATGGTGGAAGCCACGGACATGGGCATCGTCATGGAAGAGGTATCAAATTTCTAAAGCATTTTAATCATCTGTTGAATGGGAGTTTATTTGCATTGTGGTGGTTTTTTGATATTTGTCTGACTTCATTATTGTTGTTTCAAAAACTAGATTACCACCACCGCAAGCGCTACCGAGATGATGATCGCCATGCCCACGAGAGCTCTAAGAGAACTTCAGATTATGAGTCTAGAAGAAACCCCGATCATGAATCCAGACCGGTAATTTCTAAATGATTTCTTGTCTTAGTCATCTTAGTGTGCTTAAATCTTGACAAAAGGCACCAGATGCTTACATGCCATGCTTTATAACTAAATAATCTTTCGTCATACCATCCTATGCTTTTCTGTCACCAGATAGTAAACCCATTATCAGTACACTGCTTTTCAGTGGTTTTGGCTGCATATGTTGCCGTGCTTCAGTATTTAACAGTTCATGCTGTAACAGGAGAAGAATCCAAGGTTCCGGGAGAGTGGTGATTCTGACGAAGAGGATGATGATGACCGAAAGCAGCGACATTAA

mRNA sequence

ATGCCATGTGACACACATCTCAAACTTTTAGGTGGCTATGGAAAGCTAGTTCAGAAAGAGTTAGAAGCACAGAGGCAGCTTGTGGATTATGGTACTGGTTCACTAGGCTCTATGCAGCCAGTCATGCCTCAGTATGGAAAACATGGTGGAAGCCACGGACATGGGCATCGTCATGGAAGAGATTACCACCACCGCAAGCGCTACCGAGATGATGATCGCCATGCCCACGAGAGCTCTAAGAGAACTTCAGATTATGAGTCTAGAAGAAACCCCGATCATGAATCCAGACCGGAGAAGAATCCAAGGTTCCGGGAGAGTGGTGATTCTGACGAAGAGGATGATGATGACCGAAAGCAGCGACATTAA

Coding sequence (CDS)

ATGCCATGTGACACACATCTCAAACTTTTAGGTGGCTATGGAAAGCTAGTTCAGAAAGAGTTAGAAGCACAGAGGCAGCTTGTGGATTATGGTACTGGTTCACTAGGCTCTATGCAGCCAGTCATGCCTCAGTATGGAAAACATGGTGGAAGCCACGGACATGGGCATCGTCATGGAAGAGATTACCACCACCGCAAGCGCTACCGAGATGATGATCGCCATGCCCACGAGAGCTCTAAGAGAACTTCAGATTATGAGTCTAGAAGAAACCCCGATCATGAATCCAGACCGGAGAAGAATCCAAGGTTCCGGGAGAGTGGTGATTCTGACGAAGAGGATGATGATGACCGAAAGCAGCGACATTAA

Protein sequence

MPCDTHLKLLGGYGKLVQKELEAQRQLVDYGTGSLGSMQPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDRHAHESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQRH

Homology

[Close]

BLAST of Lag0009485 vs. NCBI nr
Match: XP_004137136.1 (nuclear cap-binding protein subunit 2 [Cucumis sativus] >XP_031739893.1 nuclear cap-binding protein subunit 2 [Cucumis sativus] >KAE8649330.1 hypothetical protein Csa_015022 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 6.6e-49
Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 11  GGYGKLVQKELEAQRQLVDYGTGSLGSMQPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRD 70
           GGYGKLVQKELEAQRQLVDYGTGSLGSM PVMPQYGKHGGSHGHG+RHGRDYHHRKRYRD
Sbjct: 141 GGYGKLVQKELEAQRQLVDYGTGSLGSMAPVMPQYGKHGGSHGHGNRHGRDYHHRKRYRD 200

Query: 71  DDRHAHESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQRH 122
           DDRHAHESSKRTSDYESRRN ++ESRPEKNPRFRESGDSDEEDDDDRKQRH
Sbjct: 201 DDRHAHESSKRTSDYESRRNSNYESRPEKNPRFRESGDSDEEDDDDRKQRH 251

[Close]

BLAST of Lag0009485 vs. NCBI nr
Match: XP_008464581.1 (PREDICTED: nuclear cap-binding protein subunit 2 [Cucumis melo])

HSP 1 Score: 203.8 bits (517), Expect = 8.7e-49
Identity = 106/111 (95.50%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 11  GGYGKLVQKELEAQRQLVDYGTGSLGSMQPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRD 70
           GGYGKLVQKELEAQRQLVDYGTGSLGSM PVM QYGKHGGSHGHGHRHGRDYHHRKRYRD
Sbjct: 141 GGYGKLVQKELEAQRQLVDYGTGSLGSMAPVMTQYGKHGGSHGHGHRHGRDYHHRKRYRD 200

Query: 71  DDRHAHESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQRH 122
           DDRHAHESSKRTSDYESRRN ++ESRPEKNPRFRESGDSDEEDDDDRKQRH
Sbjct: 201 DDRHAHESSKRTSDYESRRNSNYESRPEKNPRFRESGDSDEEDDDDRKQRH 251

[Close]

BLAST of Lag0009485 vs. NCBI nr
Match: TYJ96204.1 (nuclear cap-binding protein subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 203.8 bits (517), Expect = 8.7e-49
Identity = 106/111 (95.50%), Postives = 108/111 (97.30%), Query Frame = 0


Query: 11  GGYGKLVQKELEAQRQLVDYGTGSLGSMQPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRD 70
           GGYGKLVQKELEAQRQLVDYGTGSLGSM PVM QYGKHGGSHGHGHRHGRDYHHRKRYRD
Sbjct: 505 GGYGKLVQKELEAQRQLVDYGTGSLGSMAPVMTQYGKHGGSHGHGHRHGRDYHHRKRYRD 564

Query: 71  DDRHAHESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQRH 122
           DDRHAHESSKRTSDYESRRN ++ESRPEKNPRFRESGDSDEEDDDDRKQRH
Sbjct: 565 DDRHAHESSKRTSDYESRRNSNYESRPEKNPRFRESGDSDEEDDDDRKQRH 615

[Close]

BLAST of Lag0009485 vs. NCBI nr
Match: XP_022986365.1 (nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita maxima] >XP_022986366.1 nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita maxima] >XP_022986367.1 nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 201.8 bits (512), Expect = 3.3e-48
Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 11  GGYGKLVQKELEAQRQLVDYGTGSLGSMQPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRD 70
           GGYGKLVQKELEAQRQLVDYGTGSLGSM  V+PQYGKHGGSHG+GHRHGRDYH+RKRYRD
Sbjct: 141 GGYGKLVQKELEAQRQLVDYGTGSLGSMPSVIPQYGKHGGSHGNGHRHGRDYHNRKRYRD 200

Query: 71  DDRHAHESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQRH 122
           DDRHAHESSKRTSDY+SRRNPDHESRP+KNPRFRESGDSDEEDDDDRKQRH
Sbjct: 201 DDRHAHESSKRTSDYDSRRNPDHESRPQKNPRFRESGDSDEEDDDDRKQRH 251

[Close]

BLAST of Lag0009485 vs. NCBI nr
Match: XP_038900343.1 (nuclear cap-binding protein subunit 2 [Benincasa hispida] >XP_038900344.1 nuclear cap-binding protein subunit 2 [Benincasa hispida])

HSP 1 Score: 201.1 bits (510), Expect = 5.6e-48
Identity = 106/110 (96.36%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 11  GGYGKLVQKELEAQRQLVDYGTGSLGSMQPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRD 70
           GGYGKLVQKELEAQRQLVDYGTGSLGSM PVM QYGKHGGSHGHGHRHGRDYHHRKRYRD
Sbjct: 141 GGYGKLVQKELEAQRQLVDYGTGSLGSM-PVMTQYGKHGGSHGHGHRHGRDYHHRKRYRD 200

Query: 71  DDRHAHESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR 121
           DDRHAHESSKRTSDYESRRNPDH+SRPEKNPRFRESGDSDEEDDDD+KQR
Sbjct: 201 DDRHAHESSKRTSDYESRRNPDHDSRPEKNPRFRESGDSDEEDDDDQKQR 249

[Close]

BLAST of Lag0009485 vs. ExPASy Swiss-Prot
Match: Q9XFD1 (Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CBP20 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.3e-27
Identity = 74/116 (63.79%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 11  GGYGKLVQKELEAQRQLVDYGTGSLGSMQPVMP-QYG---KHGGSHGHG--HRHGRDYHH 70
           GGYGKLVQKELEAQRQLVDYGTGSLG+     P  YG   + GG++G G  +RHGR  +H
Sbjct: 141 GGYGKLVQKELEAQRQLVDYGTGSLGAYPQAAPTNYGNGRRGGGNYGQGGQNRHGRGDYH 200

Query: 71  RKRYRDDDRHAHESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR 121
           RKR RDDDR+  ++S+R +D+ESRR+ D + RPEKNPRFRESGDSD++ +DDRK+R
Sbjct: 201 RKRQRDDDRYGRDNSRRNTDHESRRDTDSDMRPEKNPRFRESGDSDDDGEDDRKRR 256

[Close]

BLAST of Lag0009485 vs. ExPASy Swiss-Prot
Match: Q84L14 (Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CBP20 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-14
Identity = 63/113 (55.75%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 11  GGYGKLVQKELEAQRQLVDYGTGSLGSMQP-VMPQYGKHGGSHGHG--HRHGRDYHHRKR 70
           GGYGK+VQKELEAQR+LVDYG    G+ QP   PQY +     G+G  +R+ RDY  RKR
Sbjct: 141 GGYGKMVQKELEAQRELVDYG----GAFQPNAPPQYDRGDRKRGYGDSYRNDRDY-QRKR 200

Query: 71  YRDDDRHAHESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR 121
           YR+D+R    SS+R  D E +R+       EKNPRFRE GDSDEEDDD  K+R
Sbjct: 201 YRNDER----SSQRAPDSEFKRDAIDS---EKNPRFREKGDSDEEDDDYDKRR 241

The following BLAST results are available for this feature:

BLAST of Lag0009485 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137136.1	6.6e-49	95.50	nuclear cap-binding protein subunit 2 [Cucumis sativus] >XP_031739893.1 nuclear ...	[more]
XP_008464581.1	8.7e-49	95.50	PREDICTED: nuclear cap-binding protein subunit 2 [Cucumis melo]	[more]
TYJ96204.1	8.7e-49	95.50	nuclear cap-binding protein subunit 2 [Cucumis melo var. makuwa]	[more]
XP_022986365.1	3.3e-48	93.69	nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita maxima] >XP_022...	[more]
XP_038900343.1	5.6e-48	96.36	nuclear cap-binding protein subunit 2 [Benincasa hispida] >XP_038900344.1 nuclea...	[more]

BLAST of Lag0009485 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XFD1	3.3e-27	63.79	Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CBP20 P...	[more]
Q84L14	2.5e-14	55.75	Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0009485.1	Lag0009485.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045292	mRNA cis splicing, via spliceosome
cellular_component	GO:0005846	nuclear cap binding complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000339	RNA cap binding