Lag0009467 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0009467
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	PTB domain engulfment adapter
Location	chr9: 39489100 .. 39490641 (-)
RNA-Seq Expression	Lag0009467
Synteny	Lag0009467

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTCTGTTTACGAGATCGGCGGTGGCAAGAGGCGGAGATGGGGTGTATGTAGCGGCTGTGCCACTAAGAGCCACAAAAGGCCCTGCCCAGCTGCTTGCTTCTGCTGCTTACTCTTTCAACATCTGGGATTTCCAGCATTTCATGGTTATCATCGCACCCTCGTCCCCAACTTCTCGTTCTCAGGTTCTTTCTTTTCCAATTAGCTTCTTCGTTATGCTTTCTGCTCAAATGACGATTTAATTTGAACTTTGAATTGAATTACCCACCTTAGAGAACAACCGTAGATGGGGTTCATAAAAGTAGTTTTCGATACTGCGTGTGCAATTTCTTAGCTAATTTGTGTTTGTGACTGCTTTTTTGGGTGGATTGATTGGCGTTTCTTGATGTTAGAGATGATTGCAGGCTTTGGTTTTTGATTTTCTACCTAAAGATCCGGAAGATATACAAGTGGCACTGGCTGCTCTTTCTGGAAAAGCAGTACCAGGTCCGGAGTGCGATTGAATTCATGCTTGGTTTTATTCGTACTCTTAACTCGTGGCCGTGGGATAGTTTTCATTCAAAAGAAAATAATGGGGTTCAGATTTTTCTTAACAATGTCCAAACTGATGAATGAATACTTATTGCAGTCCAATTCTGTGAAAGATGTTCGAAACAGTACTTATTTACATTTTTTAGTGAAGTTTAGGGTTACCTGTTATTGAAATTACTATCCATAAGTCTAACTTTGAATGACTACTGAAATTATTAAGTAACAAATGATTTGTGAAAAGAAAACAAAAAGAAGCTGCCAATGGGTGGCATCCATTGGTAAGAGTTTACTATCCTAGAAGTTCTTGAGTTCATGCAAACTTTTACACTCTTATGGTTGTGTAAATCATAAGTGTGTAAACTTTTACACACTTTTACACTCTTGAGTTCATGCAAACTTTTACACTCTTATGGTTGTGTAAATCAAACCTTCATTTTCTCACTGTTCTCAAAGTTCTCAAAGCCGTGATGCTCTTTTTACTAGTACATAACTGATTTATTTCCTTACTCCAATTTACCAGAATTTAAAAGCTCAGTAGTTTCCTTTCCCTCCCATGTTCCTGGAACTTGCTGTGTGGAGCATTCTCAATCTCCATATTTCTATCATGAGCTATGAACTGAAAATCAATTGCCTGCACTGTAACAGATTTTGTAATTTGGTCTTAGGAGTTGTTCGTGAGAGGAAGTTGTCAAGGCTGCCAAAAAACAAATGTTCATACGTTGGATCTTCGGGAGGGAATGCCGTAGAAGTAGCACGTAAGTTCAACAAAAGTTGGGATACTAATCTCAGGATTGGTCATCATGACTGCAGAAACTACACAAATGGTAATAGGCTAATAGCAATTCCTTCTCTCAATCTCTCATAGTGTTGATTTCTTTCTTATTCTTAAACATCTTAAAATTGAAACTTGAACATTATATCTGTCTCGTTTGGAAGGCTTGGTTGAGGCTCTGCTTGGTGAAGAAAATGTGTTGGAGCGCCTAAGGCAGAATTCGTTAAGCATTTAA

mRNA sequence

ATGGCTGCTCTGTTTACGAGATCGGCGGTGGCAAGAGGCGGAGATGGGGTGTATGTAGCGGCTGTGCCACTAAGAGCCACAAAAGGCCCTGCCCAGCTGCTTGCTTCTGCTGCTTACTCTTTCAACATCTGGGATTTCCAGCATTTCATGGTTATCATCGCACCCTCGTCCCCAACTTCTCGTTCTCAGGCTTTGGTTTTTGATTTTCTACCTAAAGATCCGGAAGATATACAAGTGGCACTGGCTGCTCTTTCTGGAAAAGCAGTACCAGGAGTTGTTCGTGAGAGGAAGTTGTCAAGGCTGCCAAAAAACAAATGTTCATACGTTGGATCTTCGGGAGGGAATGCCGTAGAAGTAGCACGTAAGTTCAACAAAAGTTGGGATACTAATCTCAGGATTGGTCATCATGACTGCAGAAACTACACAAATGGCTTGGTTGAGGCTCTGCTTGGTGAAGAAAATGTGTTGGAGCGCCTAAGGCAGAATTCGTTAAGCATTTAA

Coding sequence (CDS)

ATGGCTGCTCTGTTTACGAGATCGGCGGTGGCAAGAGGCGGAGATGGGGTGTATGTAGCGGCTGTGCCACTAAGAGCCACAAAAGGCCCTGCCCAGCTGCTTGCTTCTGCTGCTTACTCTTTCAACATCTGGGATTTCCAGCATTTCATGGTTATCATCGCACCCTCGTCCCCAACTTCTCGTTCTCAGGCTTTGGTTTTTGATTTTCTACCTAAAGATCCGGAAGATATACAAGTGGCACTGGCTGCTCTTTCTGGAAAAGCAGTACCAGGAGTTGTTCGTGAGAGGAAGTTGTCAAGGCTGCCAAAAAACAAATGTTCATACGTTGGATCTTCGGGAGGGAATGCCGTAGAAGTAGCACGTAAGTTCAACAAAAGTTGGGATACTAATCTCAGGATTGGTCATCATGACTGCAGAAACTACACAAATGGCTTGGTTGAGGCTCTGCTTGGTGAAGAAAATGTGTTGGAGCGCCTAAGGCAGAATTCGTTAAGCATTTAA

Protein sequence

MAALFTRSAVARGGDGVYVAAVPLRATKGPAQLLASAAYSFNIWDFQHFMVIIAPSSPTSRSQALVFDFLPKDPEDIQVALAALSGKAVPGVVRERKLSRLPKNKCSYVGSSGGNAVEVARKFNKSWDTNLRIGHHDCRNYTNGLVEALLGEENVLERLRQNSLSI

Homology

[Close]

BLAST of Lag0009467 vs. NCBI nr
Match: XP_022948039.1 (uncharacterized protein LOC111451737 [Cucurbita moschata])

HSP 1 Score: 298.1 bits (762), Expect = 4.6e-77
Identity = 150/166 (90.36%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MAALFTRSAVARGGDGVYVAAVPLRATKGPAQLLASAAYSFNIWDFQHFMVIIAPSSPTS 60
           MA LF++ AV RGGDGVYVAAVPLRATKGPAQLLASAAYSFNIWD QHFMVIIAPSSPTS
Sbjct: 1   MATLFSKLAVVRGGDGVYVAAVPLRATKGPAQLLASAAYSFNIWDLQHFMVIIAPSSPTS 60

Query: 61  RSQALVFDFLPKDPEDIQVALAALSGKAVPGVVRERKLSRLPKNKCSYVGSSGGNAVEVA 120
           RSQALVFDF PKDPEDIQVALAALSGKAVPGVVRERKLSRLPK KCSY+GSS  NAVEVA
Sbjct: 61  RSQALVFDFQPKDPEDIQVALAALSGKAVPGVVRERKLSRLPKYKCSYIGSSEANAVEVA 120

Query: 121 RKFNKSWDTNLRIGHHDCRNYTNGLVEALLGEENVLERLRQNSLSI 167
           RKFN+SWDTNL+IGHHDCR+YTNGLVEALLGEENVLE LRQNS SI
Sbjct: 121 RKFNESWDTNLKIGHHDCRDYTNGLVEALLGEENVLEYLRQNSFSI 166

[Close]

BLAST of Lag0009467 vs. NCBI nr
Match: XP_023534339.1 (uncharacterized protein LOC111795930 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 296.6 bits (758), Expect = 1.3e-76
Identity = 149/166 (89.76%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MAALFTRSAVARGGDGVYVAAVPLRATKGPAQLLASAAYSFNIWDFQHFMVIIAPSSPTS 60
           MA LF++ AV RGGDGVYVAAVPLRATKGPAQLLASAAYSFNIWD QHFMVIIAPSSPTS
Sbjct: 1   MATLFSKLAVVRGGDGVYVAAVPLRATKGPAQLLASAAYSFNIWDLQHFMVIIAPSSPTS 60

Query: 61  RSQALVFDFLPKDPEDIQVALAALSGKAVPGVVRERKLSRLPKNKCSYVGSSGGNAVEVA 120
           RSQALVFDF PKDPEDIQVALA LSGKAVPGVVRERKLSRLPK KCSY+GSS  NAVEVA
Sbjct: 61  RSQALVFDFQPKDPEDIQVALAVLSGKAVPGVVRERKLSRLPKYKCSYIGSSEANAVEVA 120

Query: 121 RKFNKSWDTNLRIGHHDCRNYTNGLVEALLGEENVLERLRQNSLSI 167
           RKFN+SWDTNL+IGHHDCR+YTNGLVEALLGEENVLE LRQNS SI
Sbjct: 121 RKFNESWDTNLKIGHHDCRDYTNGLVEALLGEENVLEYLRQNSFSI 166

[Close]

BLAST of Lag0009467 vs. NCBI nr
Match: KAG6604899.1 (hypothetical protein SDJN03_02216, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026982.1 hypothetical protein SDJN02_10990 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.7 bits (748), Expect = 1.9e-75
Identity = 149/166 (89.76%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MAALFTRSAVARGGDGVYVAAVPLRATKGPAQLLASAAYSFNIWDFQHFMVIIAPSSPTS 60
           MA LF++ AV RGGDGVYVAAVPLRATKGPAQLLASAAYSFNIWD QHFMVIIAPSSPTS
Sbjct: 1   MATLFSKLAVVRGGDGVYVAAVPLRATKGPAQLLASAAYSFNIWDLQHFMVIIAPSSPTS 60

Query: 61  RSQALVFDFLPKDPEDIQVALAALSGKAVPGVVRERKLSRLPKNKCSYVGSSGGNAVEVA 120
           RSQALVFDF PKDPEDIQVALAALSGKAVPGVVRERKLSRLPK KCSY+GS   NAVEVA
Sbjct: 61  RSQALVFDFQPKDPEDIQVALAALSGKAVPGVVRERKLSRLPKYKCSYIGSE-ANAVEVA 120

Query: 121 RKFNKSWDTNLRIGHHDCRNYTNGLVEALLGEENVLERLRQNSLSI 167
           RKFN+SWDTNL+IGHHDCR+YTNGLVEALLGEENVLE LRQNS SI
Sbjct: 121 RKFNESWDTNLKIGHHDCRDYTNGLVEALLGEENVLEYLRQNSFSI 165

[Close]

BLAST of Lag0009467 vs. NCBI nr
Match: XP_022971116.1 (uncharacterized protein LOC111469884 [Cucurbita maxima])

HSP 1 Score: 290.4 bits (742), Expect = 9.7e-75
Identity = 147/166 (88.55%), Postives = 153/166 (92.17%), Query Frame = 0


Query: 1   MAALFTRSAVARGGDGVYVAAVPLRATKGPAQLLASAAYSFNIWDFQHFMVIIAPSSPTS 60
           M  LF++ AV RGGDGVYVAAVPLRATKGPAQLLASAAYSFNIWD QHFMVIIAP SPTS
Sbjct: 1   MTTLFSKLAVVRGGDGVYVAAVPLRATKGPAQLLASAAYSFNIWDLQHFMVIIAPPSPTS 60

Query: 61  RSQALVFDFLPKDPEDIQVALAALSGKAVPGVVRERKLSRLPKNKCSYVGSSGGNAVEVA 120
           RSQALVFDF PKDPEDIQVALAALSGKAVPGVVRERKLSRLPK KCSY+GSS  NAVEVA
Sbjct: 61  RSQALVFDFQPKDPEDIQVALAALSGKAVPGVVRERKLSRLPKYKCSYIGSSEANAVEVA 120

Query: 121 RKFNKSWDTNLRIGHHDCRNYTNGLVEALLGEENVLERLRQNSLSI 167
           RKFN+SWDTNL+IG HDCR+YTNGLVEALLGEENVLE LRQNS SI
Sbjct: 121 RKFNESWDTNLKIGLHDCRDYTNGLVEALLGEENVLEYLRQNSFSI 166

[Close]

BLAST of Lag0009467 vs. NCBI nr
Match: XP_038901412.1 (uncharacterized protein LOC120088292 isoform X2 [Benincasa hispida])

HSP 1 Score: 290.4 bits (742), Expect = 9.7e-75
Identity = 150/168 (89.29%), Postives = 155/168 (92.26%), Query Frame = 0


Query: 1   MAALFTR--SAVARGGDGVYVAAVPLRATKGPAQLLASAAYSFNIWDFQHFMVIIAPSSP 60
           MA+LFT+   AVAR GDGVYVAAVPLRATKGPAQLLASAAYSFNIWD QHFMVIIAPSS 
Sbjct: 1   MASLFTKWPPAVARSGDGVYVAAVPLRATKGPAQLLASAAYSFNIWDLQHFMVIIAPSSS 60

Query: 61  TSRSQALVFDFLPKDPEDIQVALAALSGKAVPGVVRERKLSRLPKNKCSYVGSSGGNAVE 120
           +SRSQALVFDF PKDPEDIQVALAALSGKAVPGVVRERKLSRLPK KCSYVG S  NAVE
Sbjct: 61  SSRSQALVFDFQPKDPEDIQVALAALSGKAVPGVVRERKLSRLPKTKCSYVGYSNANAVE 120

Query: 121 VARKFNKSWDTNLRIGHHDCRNYTNGLVEALLGEENVLERLRQNSLSI 167
           VA KFN SWDTNLRIGHHDCR+YTNGLVEAL+GEENVLERLRQNSLSI
Sbjct: 121 VASKFNGSWDTNLRIGHHDCRDYTNGLVEALVGEENVLERLRQNSLSI 168

The following BLAST results are available for this feature:

BLAST of Lag0009467 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948039.1	4.6e-77	90.36	uncharacterized protein LOC111451737 [Cucurbita moschata]	[more]
XP_023534339.1	1.3e-76	89.76	uncharacterized protein LOC111795930 [Cucurbita pepo subsp. pepo]	[more]
KAG6604899.1	1.9e-75	89.76	hypothetical protein SDJN03_02216, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022971116.1	9.7e-75	88.55	uncharacterized protein LOC111469884 [Cucurbita maxima]	[more]
XP_038901412.1	9.7e-75	89.29	uncharacterized protein LOC120088292 isoform X2 [Benincasa hispida]	[more]

BLAST of Lag0009467 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36342	PTB DOMAIN ENGULFMENT ADAPTER	coord: 6..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0009467.1	Lag0009467.1	mRNA