Lag0009410 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0009410
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRING-H2 finger protein ATL18-like
Locationchr9: 39014446 .. 39014901 (+)
RNA-Seq ExpressionLag0009410
SyntenyLag0009410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGGTTTGATTTTTCTAAATTCGCCTTTGCGATTCGCTGTCATTTTCTTCTACACTTTCCTATGGATCCCGCTGTTTCGTCTCAAGGAAGCGATTCTTAGCGTCCTTAGTGTTTTCCGCCTCGCATCTCTGCCGGAACTCGACGGCGGAGCTCTGCTGGTGAGAAGATACGGTGAGTTGCGGAGGAGCGACGATCGAGCGGAGGAGGAGGAGGAGGAGGAGGAGATGTGCTCCATCTGTTTGACGGAATTCGCGAGAGAAGATTCCGTGTGCGAATTGCCGGATTGTTCGCACGTTTTTCATTTCAATTGCATCGAGAAGTGGCTCGAGAGGAATCACTTCACTTGCCCGCTCTGTAGGTGCTTCTTCAACATCGAGAATCGCCATGAGAAGCTTCGCTTCAGCTTCGTCGTTCCAGATAATCCTTCTTGCCTGTATTATTTCTTGCAGTGA

mRNA sequence

ATGTTAGGTTTGATTTTTCTAAATTCGCCTTTGCGATTCGCTGTCATTTTCTTCTACACTTTCCTATGGATCCCGCTGTTTCGTCTCAAGGAAGCGATTCTTAGCGTCCTTAGTGTTTTCCGCCTCGCATCTCTGCCGGAACTCGACGGCGGAGCTCTGCTGGTGAGAAGATACGGTGAGTTGCGGAGGAGCGACGATCGAGCGGAGGAGGAGGAGGAGGAGGAGGAGATGTGCTCCATCTGTTTGACGGAATTCGCGAGAGAAGATTCCGTGTGCGAATTGCCGGATTGTTCGCACGTTTTTCATTTCAATTGCATCGAGAAGTGGCTCGAGAGGAATCACTTCACTTGCCCGCTCTGTAGGTGCTTCTTCAACATCGAGAATCGCCATGAGAAGCTTCGCTTCAGCTTCGTCGTTCCAGATAATCCTTCTTGCCTGTATTATTTCTTGCAGTGA

Coding sequence (CDS)

ATGTTAGGTTTGATTTTTCTAAATTCGCCTTTGCGATTCGCTGTCATTTTCTTCTACACTTTCCTATGGATCCCGCTGTTTCGTCTCAAGGAAGCGATTCTTAGCGTCCTTAGTGTTTTCCGCCTCGCATCTCTGCCGGAACTCGACGGCGGAGCTCTGCTGGTGAGAAGATACGGTGAGTTGCGGAGGAGCGACGATCGAGCGGAGGAGGAGGAGGAGGAGGAGGAGATGTGCTCCATCTGTTTGACGGAATTCGCGAGAGAAGATTCCGTGTGCGAATTGCCGGATTGTTCGCACGTTTTTCATTTCAATTGCATCGAGAAGTGGCTCGAGAGGAATCACTTCACTTGCCCGCTCTGTAGGTGCTTCTTCAACATCGAGAATCGCCATGAGAAGCTTCGCTTCAGCTTCGTCGTTCCAGATAATCCTTCTTGCCTGTATTATTTCTTGCAGTGA

Protein sequence

MLGLIFLNSPLRFAVIFFYTFLWIPLFRLKEAILSVLSVFRLASLPELDGGALLVRRYGELRRSDDRAEEEEEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNHFTCPLCRCFFNIENRHEKLRFSFVVPDNPSCLYYFLQ
Homology
BLAST of Lag0009410 vs. NCBI nr
Match: XP_022944066.1 (RING-H2 finger protein ATL18-like [Cucurbita moschata] >KAG6570951.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.1 bits (601), Expect = 2.0e-58
Identity = 120/154 (77.92%), Postives = 130/154 (84.42%), Query Frame = 0

Query: 1   MLGLIFLNSPLRFAVIFFYTFLWIPLFRLKEAILSVLSVFRLASLPELD---GGALLVRR 60
           MLGLIFLNS +  A+IFF TF+WIPLFR+KEAIL V SVFRL SLPE+D   GG LLVRR
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGVASVFRLVSLPEMDSSRGGTLLVRR 60

Query: 61  YGELRRSDDRAEEEEEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNHFTC 120
           Y EL+RSDDRA    EEEEMCSICLTEFAREDSVC+LPDC+HVFHF+CIEKW ERN FTC
Sbjct: 61  YEELQRSDDRA----EEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTC 120

Query: 121 PLCRCFFNIENRHEKLRFSFVVPDNPSCLYYFLQ 152
           PLCRCFFNIE  HEK +  FVVPDNPS LYYFLQ
Sbjct: 121 PLCRCFFNIEKHHEK-KLRFVVPDNPSSLYYFLQ 149

BLAST of Lag0009410 vs. NCBI nr
Match: KAG7010790.1 (RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.7 bits (600), Expect = 2.6e-58
Identity = 119/154 (77.27%), Postives = 130/154 (84.42%), Query Frame = 0

Query: 1   MLGLIFLNSPLRFAVIFFYTFLWIPLFRLKEAILSVLSVFRLASLPELD---GGALLVRR 60
           MLGLIFLNS +  A+IFF TF+WIPLFR+KEAIL + SVFRLASLPE+D   GG LLVRR
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRR 60

Query: 61  YGELRRSDDRAEEEEEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNHFTC 120
           Y EL+RSDDR     EEEEMCSICLTEFAREDSVC+LPDC+HVFHF+CIEKW ERN FTC
Sbjct: 61  YEELQRSDDRT----EEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTC 120

Query: 121 PLCRCFFNIENRHEKLRFSFVVPDNPSCLYYFLQ 152
           PLCRCFFNIE  HEK +  FVVPDNPS LYYFLQ
Sbjct: 121 PLCRCFFNIEKHHEK-KLRFVVPDNPSSLYYFLQ 149

BLAST of Lag0009410 vs. NCBI nr
Match: XP_023512248.1 (RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.0 bits (598), Expect = 4.4e-58
Identity = 119/154 (77.27%), Postives = 130/154 (84.42%), Query Frame = 0

Query: 1   MLGLIFLNSPLRFAVIFFYTFLWIPLFRLKEAILSVLSVFRLASLPELD---GGALLVRR 60
           MLGLIFLNS +  A+IFF TF+WIPLFR+KEAIL V SVFRLASLPE+D   GG LLVRR
Sbjct: 1   MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGVASVFRLASLPEMDSSRGGTLLVRR 60

Query: 61  YGELRRSDDRAEEEEEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNHFTC 120
           Y EL+RSDDR     EEEEMCSICLTEFAREDSVC+LPDC+HVFHF+CIEKW ERN FTC
Sbjct: 61  YEELQRSDDRT----EEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTC 120

Query: 121 PLCRCFFNIENRHEKLRFSFVVPDNPSCLYYFLQ 152
           PLCRCFFNIE  HE+ +  FVVPDNPS LYYFLQ
Sbjct: 121 PLCRCFFNIEKHHER-KLRFVVPDNPSSLYYFLQ 149

BLAST of Lag0009410 vs. NCBI nr
Match: XP_022947864.1 (E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata])

HSP 1 Score: 204.9 bits (520), Expect = 4.9e-49
Identity = 104/143 (72.73%), Postives = 116/143 (81.12%), Query Frame = 0

Query: 14  AVIFFYTFLWIPLFRLKEAILSVLSVFRLASLPELD---GGALLVRRYGELRRSDDRAEE 73
           A+ FF T++WIPL RLK+AI+  +SVFRLA +PE D   GG LLVRRY EL+RSDDRA  
Sbjct: 93  AISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRA-- 152

Query: 74  EEEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNHFTCPLCRC--FFNIEN 133
              EEE+CSICL EFAR DSVC LPDCSHVFHF+CIEKWLERN FTCPLCRC  FFNI N
Sbjct: 153 ---EEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRN 212

Query: 134 RHEKLRFSFVVPDNPSCLYYFLQ 152
           RHE+ +  FVVPDNPSCLYYFLQ
Sbjct: 213 RHER-KLQFVVPDNPSCLYYFLQ 229

BLAST of Lag0009410 vs. NCBI nr
Match: KAG6604984.1 (RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035019.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.9 bits (520), Expect = 4.9e-49
Identity = 104/143 (72.73%), Postives = 116/143 (81.12%), Query Frame = 0

Query: 14  AVIFFYTFLWIPLFRLKEAILSVLSVFRLASLPELD---GGALLVRRYGELRRSDDRAEE 73
           A+ FF T++WIPL RLK+AI+  +SVFRLA +PE D   GG LLVRRY EL+RSDDRA  
Sbjct: 7   AISFFNTYVWIPLLRLKDAIIGGVSVFRLAFVPESDGSSGGTLLVRRYEELQRSDDRA-- 66

Query: 74  EEEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNHFTCPLCRC--FFNIEN 133
              EEE+CSICL EFAR DSVC LPDCSHVFHF+CIEKWLERN FTCPLCRC  FFNI N
Sbjct: 67  ---EEEICSICLMEFARGDSVCVLPDCSHVFHFDCIEKWLERNRFTCPLCRCFFFFNIRN 126

Query: 134 RHEKLRFSFVVPDNPSCLYYFLQ 152
           RHE+ +  FVVPDNPSCLYYFLQ
Sbjct: 127 RHER-KLQFVVPDNPSCLYYFLQ 143

BLAST of Lag0009410 vs. ExPASy Swiss-Prot
Match: Q9SZL4 (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-17
Identity = 58/138 (42.03%), Postives = 73/138 (52.90%), Query Frame = 0

Query: 1   MLGLIFLNSPLRFAVIFFYTFLWIPLFRLKEAILSVLSVFRLASLPELDGGALLVRRYGE 60
           M+ ++F  SPL  A I FYT + IPL RLK+           A   + DG  L+   +G 
Sbjct: 1   MISMLFPRSPLCTAAIVFYTCVCIPLGRLKKNGGD-------ADAHDDDGYNLVGVMFG- 60

Query: 61  LRRSDDRAEEEEEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNHFTCPLC 120
                   ++E+EEE  C ICL EF  ED+V  LP C+H+FH NCIE WL R H TCPLC
Sbjct: 61  --------DKEKEEEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLC 120

Query: 121 RCFF--------NIENRH 131
           R F         N+ N H
Sbjct: 121 RSFVLAPTPPTQNVNNAH 122

BLAST of Lag0009410 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.0e-10
Identity = 31/93 (33.33%), Postives = 54/93 (58.06%), Query Frame = 0

Query: 29  LKEAILSVLSVFRLASLPELDGGALLVRRYGELRRSDDRAEEEEEEEEMCSICLTEFARE 88
           L E+++  + +F+     + + G            + +  EEEE+  + CS+CL+EF  E
Sbjct: 99  LDESVIRAIPIFKFKKRYDQNDGVF----------TGEGEEEEEKRSQECSVCLSEFQDE 158

Query: 89  DSVCELPDCSHVFHFNCIEKWLERNHFTCPLCR 122
           + +  +P+CSH+FH +CI+ WL+ N+  CPLCR
Sbjct: 159 EKLRIIPNCSHLFHIDCIDVWLQ-NNANCPLCR 180

BLAST of Lag0009410 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 78  CSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNHFTCPLCR-CFFNIENRHEKLRFS 137
           C++CL EF+ +D +  LP+CSH FH +CI+ WL  N  TCPLCR   F++ ++ E   F+
Sbjct: 144 CAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNS-TCPLCRGTLFSLGHQFEYPDFN 203

BLAST of Lag0009410 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 5.1e-09
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 78  CSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNHFTCPLCR-CFFNIENRHEKLRFS 137
           C++CL EF  ED +  LP CSH FH +CI+ WL  +H TCPLCR    +  + H+  R S
Sbjct: 134 CAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL-LSHSTCPLCRSSLLSDLSSHQDPRSS 193

Query: 138 FVV 140
           F++
Sbjct: 194 FLL 195

BLAST of Lag0009410 vs. ExPASy Swiss-Prot
Match: Q9FL07 (RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.1e-09
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0

Query: 78  CSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNHFTCPLCR 122
           C++CL EF+ +D +  LP CSH FH NCI+ WL+ N  TCPLCR
Sbjct: 143 CAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNS-TCPLCR 185

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022944066.12.0e-5877.92RING-H2 finger protein ATL18-like [Cucurbita moschata] >KAG6570951.1 RING-H2 fin... [more]
KAG7010790.12.6e-5877.27RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperm... [more]
XP_023512248.14.4e-5877.27RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo][more]
XP_022947864.14.9e-4972.73E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata][more]
KAG6604984.14.9e-4972.73RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia] >K... [more]
Match NameE-valueIdentityDescription
Q9SZL41.7e-1742.03RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1[more]
Q9LSW96.0e-1033.33RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1[more]
Q8GW383.0e-0945.90RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1[more]
Q940Q45.1e-0946.03RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2[more]
Q9FL075.1e-0956.82RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 78..120
e-value: 2.1E-6
score: 37.3
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 77..121
e-value: 9.5E-14
score: 51.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 78..121
score: 13.020386
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 57..125
e-value: 6.4E-19
score: 69.0
NoneNo IPR availablePANTHERPTHR45969:SF9ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEINcoord: 5..124
NoneNo IPR availablePANTHERPTHR45969RING ZINC FINGER PROTEIN-RELATEDcoord: 5..124
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 69..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0009410.1Lag0009410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane