Lag0009410 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTAGGTTTGATTTTTCTAAATTCGCCTTTGCGATTCGCTGTCATTTTCTTCTACACTTTCCTATGGATCCCGCTGTTTCGTCTCAAGGAAGCGATTCTTAGCGTCCTTAGTGTTTTCCGCCTCGCATCTCTGCCGGAACTCGACGGCGGAGCTCTGCTGGTGAGAAGATACGGTGAGTTGCGGAGGAGCGACGATCGAGCGGAGGAGGAGGAGGAGGAGGAGGAGATGTGCTCCATCTGTTTGACGGAATTCGCGAGAGAAGATTCCGTGTGCGAATTGCCGGATTGTTCGCACGTTTTTCATTTCAATTGCATCGAGAAGTGGCTCGAGAGGAATCACTTCACTTGCCCGCTCTGTAGGTGCTTCTTCAACATCGAGAATCGCCATGAGAAGCTTCGCTTCAGCTTCGTCGTTCCAGATAATCCTTCTTGCCTGTATTATTTCTTGCAGTGA ATGTTAGGTTTGATTTTTCTAAATTCGCCTTTGCGATTCGCTGTCATTTTCTTCTACACTTTCCTATGGATCCCGCTGTTTCGTCTCAAGGAAGCGATTCTTAGCGTCCTTAGTGTTTTCCGCCTCGCATCTCTGCCGGAACTCGACGGCGGAGCTCTGCTGGTGAGAAGATACGGTGAGTTGCGGAGGAGCGACGATCGAGCGGAGGAGGAGGAGGAGGAGGAGGAGATGTGCTCCATCTGTTTGACGGAATTCGCGAGAGAAGATTCCGTGTGCGAATTGCCGGATTGTTCGCACGTTTTTCATTTCAATTGCATCGAGAAGTGGCTCGAGAGGAATCACTTCACTTGCCCGCTCTGTAGGTGCTTCTTCAACATCGAGAATCGCCATGAGAAGCTTCGCTTCAGCTTCGTCGTTCCAGATAATCCTTCTTGCCTGTATTATTTCTTGCAGTGA ATGTTAGGTTTGATTTTTCTAAATTCGCCTTTGCGATTCGCTGTCATTTTCTTCTACACTTTCCTATGGATCCCGCTGTTTCGTCTCAAGGAAGCGATTCTTAGCGTCCTTAGTGTTTTCCGCCTCGCATCTCTGCCGGAACTCGACGGCGGAGCTCTGCTGGTGAGAAGATACGGTGAGTTGCGGAGGAGCGACGATCGAGCGGAGGAGGAGGAGGAGGAGGAGGAGATGTGCTCCATCTGTTTGACGGAATTCGCGAGAGAAGATTCCGTGTGCGAATTGCCGGATTGTTCGCACGTTTTTCATTTCAATTGCATCGAGAAGTGGCTCGAGAGGAATCACTTCACTTGCCCGCTCTGTAGGTGCTTCTTCAACATCGAGAATCGCCATGAGAAGCTTCGCTTCAGCTTCGTCGTTCCAGATAATCCTTCTTGCCTGTATTATTTCTTGCAGTGA MLGLIFLNSPLRFAVIFFYTFLWIPLFRLKEAILSVLSVFRLASLPELDGGALLVRRYGELRRSDDRAEEEEEEEEMCSICLTEFAREDSVCELPDCSHVFHFNCIEKWLERNHFTCPLCRCFFNIENRHEKLRFSFVVPDNPSCLYYFLQ Homology
BLAST of Lag0009410 vs. NCBI nr
Match: XP_022944066.1 (RING-H2 finger protein ATL18-like [Cucurbita moschata] >KAG6570951.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 236.1 bits (601), Expect = 2.0e-58 Identity = 120/154 (77.92%), Postives = 130/154 (84.42%), Query Frame = 0
BLAST of Lag0009410 vs. NCBI nr
Match: KAG7010790.1 (RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 235.7 bits (600), Expect = 2.6e-58 Identity = 119/154 (77.27%), Postives = 130/154 (84.42%), Query Frame = 0
BLAST of Lag0009410 vs. NCBI nr
Match: XP_023512248.1 (RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 235.0 bits (598), Expect = 4.4e-58 Identity = 119/154 (77.27%), Postives = 130/154 (84.42%), Query Frame = 0
BLAST of Lag0009410 vs. NCBI nr
Match: XP_022947864.1 (E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata]) HSP 1 Score: 204.9 bits (520), Expect = 4.9e-49 Identity = 104/143 (72.73%), Postives = 116/143 (81.12%), Query Frame = 0
BLAST of Lag0009410 vs. NCBI nr
Match: KAG6604984.1 (RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035019.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 204.9 bits (520), Expect = 4.9e-49 Identity = 104/143 (72.73%), Postives = 116/143 (81.12%), Query Frame = 0
BLAST of Lag0009410 vs. ExPASy Swiss-Prot
Match: Q9SZL4 (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 1.7e-17 Identity = 58/138 (42.03%), Postives = 73/138 (52.90%), Query Frame = 0
BLAST of Lag0009410 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 6.0e-10 Identity = 31/93 (33.33%), Postives = 54/93 (58.06%), Query Frame = 0
BLAST of Lag0009410 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09 Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0
BLAST of Lag0009410 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2) HSP 1 Score: 62.4 bits (150), Expect = 5.1e-09 Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 0
BLAST of Lag0009410 vs. ExPASy Swiss-Prot
Match: Q9FL07 (RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 5.1e-09 Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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