Lag0009249 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0009249
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr9: 37333224 .. 37333729 (-)
RNA-Seq ExpressionLag0009249
SyntenyLag0009249
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCAGAATACACATGATCAATCACAGACCTTTCTCCAGTACTTGGCATTTAATGGGGATGGGACCCTATGGCCCTGCTTTTGGTTTGGACCTGCATGTGCAGTCATGTTCATTGTGACTTCATTTCATATCAATCTCGCCTTTGTTTCGCACATTTGCTTACGAGGTACAGCACAATCCTATCCTCAAGTTTTATATTTGCTCCATCAATGTCTAGATGGGTCCAATTGTTCAATTCCCATCCTAATCAATCATTGTTCCATTGTGTATATCCTTCTAAATCCAGGTTTCTTATACTCTAGACCCTCATTAGTCATTTTTTCCTTGGTTAATTTTTCACCTATATCAACTGTATACATATTGTGGCTTGAGTTGTTGCAGATCACAACCAAACTCCCAACCAGAAAACTAAGGCGGCGGCCTGCTGCAGGCTACATTTTCAGCACGCCTATCAAACCGGTCCTCTCTACAACAACATCCCACATGGGGTTAAGCTCTGCTAG

mRNA sequence

ATGTTGCAGAATACACATGATCAATCACAGACCTTTCTCCAGTACTTGGCATTTAATGGGGATGGGACCCTATGGCCCTGCTTTTGGTTTGGACCTGCATGTGCAGTCATGTTCATTGTGACTTCATTTCATATCAATCTCGCCTTTGTTTCGCACATTTGCTTACGAGATCACAACCAAACTCCCAACCAGAAAACTAAGGCGGCGGCCTGCTGCAGGCTACATTTTCAGCACGCCTATCAAACCGGTCCTCTCTACAACAACATCCCACATGGGGTTAAGCTCTGCTAG

Coding sequence (CDS)

ATGTTGCAGAATACACATGATCAATCACAGACCTTTCTCCAGTACTTGGCATTTAATGGGGATGGGACCCTATGGCCCTGCTTTTGGTTTGGACCTGCATGTGCAGTCATGTTCATTGTGACTTCATTTCATATCAATCTCGCCTTTGTTTCGCACATTTGCTTACGAGATCACAACCAAACTCCCAACCAGAAAACTAAGGCGGCGGCCTGCTGCAGGCTACATTTTCAGCACGCCTATCAAACCGGTCCTCTCTACAACAACATCCCACATGGGGTTAAGCTCTGCTAG

Protein sequence

MLQNTHDQSQTFLQYLAFNGDGTLWPCFWFGPACAVMFIVTSFHINLAFVSHICLRDHNQTPNQKTKAAACCRLHFQHAYQTGPLYNNIPHGVKLC
Homology
[Close]
BLAST of Lag0009249 vs. NCBI nr
Match: XP_022947567.1 (uncharacterized protein LOC111451392 isoform X1 [Cucurbita moschata])

HSP 1 Score: 107.1 bits (266), Expect = 8.8e-20
Identity = 55/91 (60.44%), Postives = 61/91 (67.03%), Query Frame = 0 

Query: 1   MLQNTHDQSQTFLQYLAFNGDGTLWPCFWFGPACAVMFIVTSFHINLAFVSHICLRDHNQ 60
           MLQNTHDQSQTFLQY+AFNGDGTLWP FWFGPACA MFIVT     +++ S  C      
Sbjct: 43  MLQNTHDQSQTFLQYMAFNGDGTLWPFFWFGPACAAMFIVT-----ISYQSCSCF----- 102

Query: 61  TPNQKTKAAACCRLHFQHAYQTGPLYNNIPH 92
                  A    RLH QHAYQTG L ++IPH
Sbjct: 103 -------ANFLTRLHLQHAYQTGHLDDDIPH 116

[Close]
BLAST of Lag0009249 vs. NCBI nr
Match: XP_022947568.1 (uncharacterized protein LOC111451392 isoform X2 [Cucurbita moschata])

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-14
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 1   MLQNTHDQSQTFLQYLAFNGDGTLWPCFWFGPACAVMFIVTSFHINLAFVSHICLRDH 59
           MLQNTHDQSQTFLQY+AFNGDGTLWP FWFGPACA MFIVT  + + +  ++   R H
Sbjct: 43  MLQNTHDQSQTFLQYMAFNGDGTLWPFFWFGPACAAMFIVTISYQSCSCFANFLTRLH 100

The following BLAST results are available for this feature:
BLAST of Lag0009249 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022947567.18.8e-2060.44uncharacterized protein LOC111451392 isoform X1 [Cucurbita moschata][more]
XP_022947568.12.5e-1468.97uncharacterized protein LOC111451392 isoform X2 [Cucurbita moschata][more]
BLAST of Lag0009249 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0009249.1Lag0009249.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane