Lag0009246 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0009246
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribosome-binding factor A
Location	chr9: 37288389 .. 37294495 (-)
RNA-Seq Expression	Lag0009246
Synteny	Lag0009246

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGAGCATCTCGAGATGTCTGGATATCTTACATTACTGCAAAACAAACGAGGTAATCCAAATGCTTATTTTATGAGAATCTTGGATTACCGCAAAACAAACGGCCCTAAAACTCACTACTAATTTCAACAAAATTTAAGTTTTGCTAAAATTGAGTAGATTAGTGCACAACATGATTGAATAAATCTTTCAATGATGCAAATTTCAACAATAATCCTAATGGTTTTTTCTTAATTCATTAATCTTGTACTAAACATTTTTTTTATTAATTACATGCATATAAGAAAATTTTCATCCACGATGTTTTAGATGAAAGTCTATGATAAAATTTAGGGAAAAATACACTTTTGGTCCCTGAAGTTTGGGTTAAGTGACACTTTGGTCCTCGAGTTTTCAAACTCAACAAAAATACCCCGAGGTTTGAGATAAGGAGCAATTTGGTCCCTGCCGTCAATTTTTCTGTTAAACCCTAACGGTAAGCTGACGTGGCACTATTATTTTAATTAAAAAAATTAATTTTTAATTTTTTTAAATAAAAAATATAAAAATATTAAATATATTATTATTTTATTATTATTTTTAAAATTCTCTCTTTATCTTCTCCATCTTCTTTCTTCTCCACCTTCTTTCTCCCTCCATCTTCTTCCTTCCCCCTCCCATCTTCTTCAGCTCCGGTGGCCGGCCGCCGCCGGCTGCCGGCGAACGGCGGCGGTCGCTGGAATTTTTCTTTTTCCTTCTTTCTTCTTCTTCTCTTCTTCTCTTCTTCCCTTCTTCTTCTTTCTTTTCCTTTTTTCTGTTTTTTTTTTTAAAGAAGGGAGTTTCGGGAGGAGGAGCTCTTCCCCGAAACTCCCTTCTTTTTTTTTTTTTTAAAAAAAAAACAGAAGAAAGGAAGAGAAAGAAGAAGAAGAGAAGAAGAGAAGAAGAAGAAAGAAGGAAAAAAATAAAAAATTTCGGAGACCGCCGCCGCTGCGGTCGGCCACCGGAGCTGAAGAAGATGGGAGGGGGAAGGAAGAAGATGGAGGGAGAAAGAAGGTGGAGAAGAAAGAAGATGGAGAAGATAGAGAGAGAATTTTAAAAATAATAATAAAATAATAATATATTTAATATTTTTATATTTTTTATTTAAAAAAATTAAAAATTAATTTTTTTAATTAAAATAATAGTGTCACGTCAGCTTACCGTTAGGCTTTAACAGAAAAATTGACGGCAGCGACCAAATTGCTCCTTATCTCAAACCTCGGGGTATTTTTGTTGAGTTTGAAAACTCGGGGACCAAAGTGTCACTTAACCCAAACCTCAGGGACCAAAAGTGTATTTTTCCCTAAAATTTACAACACGTATTCACGTTGAATGTGATTGCAACACTTATGGAAGTTTAAATTTCAATTTGATAAAACTGAAAGTTTAAGGTAAAAGTTGATACAAGTGGTCAAATACGGACTAAAATTTGATTTTTTTTTTTCATAATTATTTTTGGTTAAATATACTAAATAGTTCCGAGTCTTTTAATCCATTATCAATTTGGTCTTCAATCTTTAAAAACTCTCAAGTTTACCTTTACTAGTTACTAATATATTCAAAATTCTTCCCTATGTCATTTTATAAAATAAAATAGTTGAAATTTGTTAAAGAAAAGTTGATATGCCATTAAATTATTGTTTTATTAACATATTTAGACAAGTGAATATACTACTCAAATATTATTAGCATATATTAATAATTTTCTTATATGACATATTTTTTAAACCTGCGAGAGAGATGTCTAACAAGTTAACATTTTAAATAACATACATGAAAGTAACTAAACTATCATTGTATGATGACAAGTAATCAAATTATAAAGATCGGATTGAAAAGTCCACCCAAGACATAATTCAACTTGTTATTTGTTAAGATCTATTCACACTCAAACAAGAAGTTAGAAATTTGAATCTCACTCCAAAAAGTATTTGGCTCAAGGAGTTGTGAAGTCAGAGGTTAGGTAGAGTTAATAACTCCGCTCAACTCCTTGTTTGGCAGAGTCGTCCTTTAGCATGTGTGAGTTGTGACTCATCACAATACCCCAAACTTCAGGCTCCAAATTGAAAAAGTTGCTTACAAAAAAAAATCTTTTGACAGAAGGTAGACAAAAAATTTTAAATTCTTACGTCTTCATTTCTCTTTCATCGTCAAGAAAAACTCTTCCAAATCATTCTTTTGTCAATTCTCATGCTAAGTTAGACATAAAACTTTTTAATCTAGTTTGAAGGATGACACTTTTTAAATAAAATATCACATTATATAGTTGTTTGGTGACATTTTTTTTGTTTCATATATTTTGTTTTGTTTTCTTTTTTGTAAAAACAATTGTATAATAAAATGAATTTTGATATTTTCAAATCTTGTCGTTATAAAATATTTTAGGGTCTCATTCTGAAAAGAATCACAGGGCCCATCTCATTTGGTACGGGCCGGTTGTTTATCTAGAAAATTTATAGTACATACTCCCTCCATTCAACATTTGACGGATCATGTAATGATCACTTAATAATATAATATTTTATTCCATGAGTACTACATCATTTTTAAATGTTTCTTTCCTGGCAACCAATGAATCGAGGTAGTGTGGAAAAATTGTTCATTTTTAATCTAGCCAGACGTGAGTCCATCAACTTATTAACTAATTACAACACTCTATTGTAGATCCCACAAACTTATTAACTCTTATCCAAACACTTTAGTAGGGGTTCCATAAACTTATGAAGTCCTACTCTAACTCCTAACACAAAACAATTCTCATCAAACATTTTTCACAAAATTGACTGAGATGTAAGAATTGGGCTAAAAAAAAAATCTGGAGTTAGAATGATGCTCAAATCCAAAACACTCTCTTCTCTGCAATTTCACAGGCCTTGCTAATCCAAAACCTCAGAAAAAGCTCATAGCTCGCAAATCCGAATCCATTTCAGCCCAACAAAGTAGAGATTTCGATCACAAATATCAAAATTATTCATCTGGGGAATCAAATTTCAGGATGCCGCATCTTCTGCAGCAAATTCATCCTCAACCCCATCATTCGCCACTCAAACTTTCGTCTTCCCTCGCATCTTCACGATTTCCTTCCCAATTGCAAGCTTCACCGCCATGGTTTTGCTCCCAGAGTTCCGTCGCCCTTGTTCGTCAACGTCCGACAATGAGGGGCGCAACCATTCGGTGTATGGCCAATTCACGGAGGGTTAAAATGGTGGCGAAGCAGATTCAGAGGGAGCTTTCCGACATGCTTCTTACTGATAAGGTGTTGCAGTACGCCATTCTTCCTGAGGCCTCTTTGGGAGCGGATAAGTACCTCTCGTCTCTCACCACCATCACCGATGTTGAAGTCTCCGCCGACTTGCAGGTATTTTGACAGATTGTTCAAATTGAAGAGCTGGGATGGGTGTTTCTTTTTGCTGTTCTTGAGATATTTTGTAGTGGGTAGCAGAATTATGTTTTGTTTTTCATTCGTTTTCTGGATACCCCCCAAAACTGTAGTTCGTTATGGAACTGGGAAAGAATTGAAGCTAAGGGATGAAGCCTGAGGCCTAAATGGTGATTTTTTGCTTGAATATGATAGTAAATATGAATATCGTATGAGATTTACACGATTTACACGATTTACACTACATTCAAGCGGTGCATTTGTTGAAGAGAAGGGATTGTATCGAATTTTGACTTCTTAAATTGCTACACAACTCAATTGCTGGTTGCATCTTGAACTGTGGATATAGTGTAGTTTAGCCTCTGGGAAACCCGGAAACGATTAGGAGGCTTCAGAAGCCCATTAGAAATGTTTGGTTGAAACGTTTATGACATTAGTTCTTAACTCGAGGAACTAGACTTTTTGAGAAGGAGAACATATTGAAGAGAATTCTTGTGGAATGCTTGAAAGTCACTTTAGCCTTGATAAGCAAGTGCTGGGACTACAATGCTTTTGGAAGAATTTTCCTGATAAGTCATGCTTATATCGACCACTGGGATAACCATTGCTTCTCAAGCCTGGATTGATTCTACTATAGAGACCAAGGAAAGAAGTTTGTCGATATCTTTTTTCATACAGCAACCAATCCACCTCACTTCTGCTTTTGAACTTGCAGTGGCAGATGTGTAAGTGGTGGTTGTGTTTTTTTTTTATCGATGTTTGAACAGATTTAACATTGCAAGCTGCCTATATCTTAGGATTTACCTTTTAGTCTTATTATTATTGAAAGTTTTTCTTTAAACGAGGTTTAGATATGGATATGTCACACCTTTGAGTGTCAGAATGAAAAAATGTTAATGTGATAAAAGCCATGACAGTGTGATACAAACCCTTTGGTCTTCTCTGAGCCTTGACTGAGCTGGTTAGTGGTTTGCTCTTTGCTCAGCAGTAGTAAGCCTCTTGGCTTTCAATCTTTCCCTGAAATCAGTTTTCATCTATCCTTTTCTTGTTTGTTGTCAAAGCCAAAAGCAACGTAAATATTGTTTCTTGAAAGAGTGGACATATACCTTTTTATTGTCATGAAAATTTCAGTACTACAAAGGTCAAACCTTATTTCGCCATTTAACGCTTCACCTTCCTTGAGTTTACAAGTCAGTTTGTTATTTCTTATTTGAATTGTACAGTTTAGGTACCATGTGGATGTGATTGTGTCAATATCAGCTTAAACACACCAGGAAAAGAATCAAAGAGCTTTTTCTTTTCATTTTGGTTTATATGTTGGCAACCTTGACCGATGCTTCAGCTAATAAGTAATTGTTGTATGCTATATATGAATACGGACACACAGGTGGTTAAAGTATATGTATCTGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCTATGGCTGGGTTGAAGTCTAAAGCTAAGTATGTTCGAAGTGTATTGGGAAAACGTATGAAGCTTCGACTAACTCCTGAGATACGTTTTATAGAGGATGAATCTTTTGAGAGAGGAAGCAGGGTAAGTAACAATTTATCTTCTTGCTTATATATATTTTCTTGCAATGGCTGGAGACCAGTTCAGTTACTTTTAAGAATTCCTTCCACAAGATGTTTTTCATCTCATATTCTTCCCTGTTTCTCAATGCATGTGCTTATGTCTTAGGAACTTCGGGTTTATTGCATCTTTCCTATTGAAATATCTCTGGGAAGTTTTAGAAATATCATTGTTTTGGATGCTATTTCGAACAACACAAAATACTTGGAAATCACCAATTTTCCAGTAACAAAAAGAGAGATGGTTTTGTGTGAGAACAAAATGGATCATCTTAGTAAGCAAGGGCTTGAGATGTTAGAGCTCCAAGGTCTGAATTTAAGTCTATCTATAGAACTTTAAAAGTGTAAAACTTTTGTTGTCTTTGAAGTTGACCTTGGGATGGGTGTAGCATCTGAAGATTATTGGAGTTGGCCATAAGCATAATGCAATGAGTGGGGGGCTCTCAGTACTTTAGGCCCCGTTTGATAATCACTTGGTTTTGGTTTTTTTGAAAATTAAGCTTATAAACACTCCTTTCACCTATGAGTTTCTTTGTTTTATTATTTCCTTTCTAAAGAAAATTCAAAATTCAAGCCCAGTTTTGAAAACTTAAAAAAAGCAGTTTTTAAAATTTTGTTTTGTTTTTAAAACCATAATAAAGAAATTGTGAAGACAATAAGGTATCAAGTGCAATTTTGAAAAGATAGAAAACTAAAAATGAGATGGTTATCAAAAGATGTCTCAATAATTCTATTATCAAGAGAGAGAGAACAAGATTATGTAGATGCAATAGATTTGACTGTTAAAAGTACAGCACAAACACTCATATGCATTGGGTAGGATCTTCTTGGGTGAAAAAGAGACTCCTATTTGAAACTCATCCTATCATTGCCTATTGCAACTTTTCATATCCCTATAATTTAAGCAACTGGAAGATTATTTTAAAGCTTCTTTCCTGTGCTATTTCGGTTTGAACTTTCCCAGGTAATTGCCATATTGGATCGGATCAAGGACAAAAAGAAGGATATCGATGATGAAGACTTTGAGCAATCTGAACTATCTGATGCTCCTCAAGACGACAGGGACTGGGAAGGCGACGATGCTGATGAAGACATAATATATGTACGATAG

mRNA sequence

ATGCATGAGCATCTCGAGATGTCTGGATATCTTACATTACTGCAAAACAAACGAGGCCTTGCTAATCCAAAACCTCAGAAAAAGCTCATAGCTCGCAAATCCGAATCCATTTCAGCCCAACAAAGTAGAGATTTCGATCACAAATATCAAAATTATTCATCTGGGGAATCAAATTTCAGGATGCCGCATCTTCTGCAGCAAATTCATCCTCAACCCCATCATTCGCCACTCAAACTTTCGTCTTCCCTCGCATCTTCACGATTTCCTTCCCAATTGCAAGCTTCACCGCCATGGTTTTGCTCCCAGAGTTCCGTCGCCCTTGTTCGTCAACGTCCGACAATGAGGGGCGCAACCATTCGGTGTATGGCCAATTCACGGAGGGTTAAAATGGTGGCGAAGCAGATTCAGAGGGAGCTTTCCGACATGCTTCTTACTGATAAGGTGTTGCAGTACGCCATTCTTCCTGAGGCCTCTTTGGGAGCGGATAAGTACCTCTCGTCTCTCACCACCATCACCGATGTTGAAGTCTCCGCCGACTTGCAGGTGGTTAAAGTATATGTATCTGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCTATGGCTGGGTTGAAGTCTAAAGCTAAGTATGTTCGAAGTGTATTGGGAAAACGTATGAAGCTTCGACTAACTCCTGAGATACGTTTTATAGAGGATGAATCTTTTGAGAGAGGAAGCAGGGTAATTGCCATATTGGATCGGATCAAGGACAAAAAGAAGGATATCGATGATGAAGACTTTGAGCAATCTGAACTATCTGATGCTCCTCAAGACGACAGGGACTGGGAAGGCGACGATGCTGATGAAGACATAATATATGTACGATAG

Coding sequence (CDS)

ATGCATGAGCATCTCGAGATGTCTGGATATCTTACATTACTGCAAAACAAACGAGGCCTTGCTAATCCAAAACCTCAGAAAAAGCTCATAGCTCGCAAATCCGAATCCATTTCAGCCCAACAAAGTAGAGATTTCGATCACAAATATCAAAATTATTCATCTGGGGAATCAAATTTCAGGATGCCGCATCTTCTGCAGCAAATTCATCCTCAACCCCATCATTCGCCACTCAAACTTTCGTCTTCCCTCGCATCTTCACGATTTCCTTCCCAATTGCAAGCTTCACCGCCATGGTTTTGCTCCCAGAGTTCCGTCGCCCTTGTTCGTCAACGTCCGACAATGAGGGGCGCAACCATTCGGTGTATGGCCAATTCACGGAGGGTTAAAATGGTGGCGAAGCAGATTCAGAGGGAGCTTTCCGACATGCTTCTTACTGATAAGGTGTTGCAGTACGCCATTCTTCCTGAGGCCTCTTTGGGAGCGGATAAGTACCTCTCGTCTCTCACCACCATCACCGATGTTGAAGTCTCCGCCGACTTGCAGGTGGTTAAAGTATATGTATCTGTCTTTGGTGATGAAAGAGGAAAGGATGTTGCTATGGCTGGGTTGAAGTCTAAAGCTAAGTATGTTCGAAGTGTATTGGGAAAACGTATGAAGCTTCGACTAACTCCTGAGATACGTTTTATAGAGGATGAATCTTTTGAGAGAGGAAGCAGGGTAATTGCCATATTGGATCGGATCAAGGACAAAAAGAAGGATATCGATGATGAAGACTTTGAGCAATCTGAACTATCTGATGCTCCTCAAGACGACAGGGACTGGGAAGGCGACGATGCTGATGAAGACATAATATATGTACGATAG

Protein sequence

MHEHLEMSGYLTLLQNKRGLANPKPQKKLIARKSESISAQQSRDFDHKYQNYSSGESNFRMPHLLQQIHPQPHHSPLKLSSSLASSRFPSQLQASPPWFCSQSSVALVRQRPTMRGATIRCMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAILDRIKDKKKDIDDEDFEQSELSDAPQDDRDWEGDDADEDIIYVR

Homology

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BLAST of Lag0009246 vs. NCBI nr
Match: XP_022948118.1 (probable ribosome-binding factor A, chloroplastic [Cucurbita moschata])

HSP 1 Score: 387.1 bits (993), Expect = 1.3e-103
Identity = 206/227 (90.75%), Postives = 217/227 (95.59%), Query Frame = 0


Query: 61  MPHLLQQIHPQPHHSPLKLSSSLASSRFPSQLQASPPWFCSQSSVALVRQRPTMRGATIR 120
           MPHLLQQIHPQ HH PLKLSSSLASSRFPSQ  ASPP FCS +SVALVR+RP MRGATIR
Sbjct: 1   MPHLLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVALVRRRPVMRGATIR 60

Query: 121 CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 180
           CMANSRRVKMV+KQIQRELS+MLLTDKVLQ+AILPEASLGADKYLSSLTTITDVE+S+DL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 181 QVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 240
           QVVKVYVSVFGDERGKD+AMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 241 IAILDRIKDKKKDIDDEDFEQSELSDAPQDDRDWEGDDADEDIIYVR 288
           IAILDRIKD+K +IDDED EQSELSDAPQDDRDWE DDADEDIIYV+
Sbjct: 181 IAILDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYVQ 227

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BLAST of Lag0009246 vs. NCBI nr
Match: XP_023006992.1 (probable ribosome-binding factor A, chloroplastic [Cucurbita maxima])

HSP 1 Score: 385.2 bits (988), Expect = 5.0e-103
Identity = 203/227 (89.43%), Postives = 217/227 (95.59%), Query Frame = 0


Query: 61  MPHLLQQIHPQPHHSPLKLSSSLASSRFPSQLQASPPWFCSQSSVALVRQRPTMRGATIR 120
           MPHLLQQIHPQPHH PLKLSSSLASSRFPSQ   SPP FCS +SVALVRQRP MRGATI+
Sbjct: 1   MPHLLQQIHPQPHHFPLKLSSSLASSRFPSQFLTSPPCFCSPNSVALVRQRPVMRGATIQ 60

Query: 121 CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 180
           CMANSRRVKMV+KQIQRELS+MLLTDKVLQ+AILPEASLGADKYLSSLTTITDVE+S+DL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 181 QVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 240
           QVVKVYVSVFGDERGKD+AMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 241 IAILDRIKDKKKDIDDEDFEQSELSDAPQDDRDWEGDDADEDIIYVR 288
           IAILDRIKD+K +IDDED E+SELSDAPQDDRDWE D+ADEDIIY++
Sbjct: 181 IAILDRIKDEKNNIDDEDMEKSELSDAPQDDRDWEEDEADEDIIYIQ 227

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BLAST of Lag0009246 vs. NCBI nr
Match: KAG6605037.1 (putative ribosome-binding factor A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 384.4 bits (986), Expect = 8.5e-103
Identity = 205/225 (91.11%), Postives = 215/225 (95.56%), Query Frame = 0


Query: 61  MPHLLQQIHPQPHHSPLKLSSSLASSRFPSQLQASPPWFCSQSSVALVRQRPTMRGATIR 120
           MPHLLQQIHPQ HH PLKLSSSLASSRFPSQ  ASPP FCS +SVALVR+RP MRGATIR
Sbjct: 1   MPHLLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVALVRRRPVMRGATIR 60

Query: 121 CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 180
           CMANSRRVKMV+KQIQRELS+MLLTDKVLQ+AILPEASLGADKYLSSLTTITDVE+S+DL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 181 QVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 240
           QVVKVYVSVFGDERGKD+AMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 241 IAILDRIKDKKKDIDDEDFEQSELSDAPQDDRDWEGDDADEDIIY 286
           IAILDRIKD+K +IDDED EQSELSDAPQDDRDWE DDADEDIIY
Sbjct: 181 IAILDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIY 225

[Close]

BLAST of Lag0009246 vs. NCBI nr
Match: XP_023534592.1 (probable ribosome-binding factor A, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 383.3 bits (983), Expect = 1.9e-102
Identity = 203/227 (89.43%), Postives = 216/227 (95.15%), Query Frame = 0


Query: 61  MPHLLQQIHPQPHHSPLKLSSSLASSRFPSQLQASPPWFCSQSSVALVRQRPTMRGATIR 120
           MPHLLQQIHPQ HH PLKLSSSLASSRFPSQ  ASPP FCS +SVA+VR+RP MRG TIR
Sbjct: 1   MPHLLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVAVVRRRPVMRGVTIR 60

Query: 121 CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 180
           CMANSRRVKMV+KQIQRELS+MLLTDKVLQ+AILPEASLGADKYLSSLTTITDVE+S+DL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 181 QVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 240
           QVVKVYVSVFGDERGKD+AMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 241 IAILDRIKDKKKDIDDEDFEQSELSDAPQDDRDWEGDDADEDIIYVR 288
           IAILDRIKD+K +IDDED EQSELSD+PQDDRDWE DDADEDIIYV+
Sbjct: 181 IAILDRIKDEKNNIDDEDMEQSELSDSPQDDRDWEEDDADEDIIYVQ 227

[Close]

BLAST of Lag0009246 vs. NCBI nr
Match: XP_038900542.1 (probable ribosome-binding factor A, chloroplastic [Benincasa hispida])

HSP 1 Score: 374.8 bits (961), Expect = 6.7e-100
Identity = 206/227 (90.75%), Postives = 211/227 (92.95%), Query Frame = 0


Query: 61  MPHLLQQIHPQPHHSPLKLSSSLASSRFPSQLQASPPWFCSQSSVALVRQRPTMRGATIR 120
           MPHLLQQIHPQPH SPLKLSSSL SS FPSQ QAS PWF S SSV L+R  P M GATIR
Sbjct: 1   MPHLLQQIHPQPHLSPLKLSSSLPSSPFPSQFQASRPWFYSPSSVTLLRP-PRMMGATIR 60

Query: 121 CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 180
           CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL
Sbjct: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 120

Query: 181 QVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 240
           QVVKVYVSVFGDERGKDVA+AGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 241 IAILDRIKDKKKDIDDEDFEQSELSDAPQDDRDWEGDDADEDIIYVR 288
           IAILDRIKDKKKD DDEDFE SELSD  +DDRDW+GDDADEDIIYV+
Sbjct: 181 IAILDRIKDKKKDNDDEDFEPSELSDTLEDDRDWKGDDADEDIIYVQ 226

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BLAST of Lag0009246 vs. ExPASy Swiss-Prot
Match: O65693 (Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g34730 PE=2 SV=2)

HSP 1 Score: 241.1 bits (614), Expect = 1.5e-62
Identity = 143/217 (65.90%), Postives = 167/217 (76.96%), Query Frame = 0


Query: 73  HHSPL-KLSSSLASSRFPSQLQASPPWFCSQSSVALVRQRPTMR-GATIRCMANSRRVKM 132
           HH P+  +SS   +  FP              S+A V  R  +    T+RCMAN RRVKM
Sbjct: 16  HHPPIYTVSSKTQAFHFP-------------QSMAPVNLRTNLSVRRTVRCMANPRRVKM 75

Query: 133 VAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQVVKVYVSVF 192
           VAKQI RELSDMLLTD VLQ+A+LPEA+LGAD+YLSSLTTI+DVEVS DLQVVKVYVSVF
Sbjct: 76  VAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVEVSNDLQVVKVYVSVF 135

Query: 193 GDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAILDRIKDK 252
           GD+RGKDVA+AGLKSKAKYVRS LGKRMKLRLTPE+RFIEDE+ ERGSRVIAILD+IK +
Sbjct: 136 GDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRVIAILDKIKAE 195

Query: 253 KKDIDDEDFEQSELSDAPQDDRDWEGDDADEDIIYVR 288
           K   +     ++E SD+ +DD+DWE DD DEDIIYV+
Sbjct: 196 KGSGEG----KTEPSDSTEDDQDWEVDDPDEDIIYVK 215

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BLAST of Lag0009246 vs. ExPASy Swiss-Prot
Match: B0JRP8 (Ribosome-binding factor A OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rbfA PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.0e-21
Identity = 59/140 (42.14%), Postives = 89/140 (63.57%), Query Frame = 0


Query: 122 MANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQ 181
           MAN RRV  V+  I+RE+S MLL +            +  D+  + + ++TDV++S DLQ
Sbjct: 1   MANDRRVSRVSSLIKREVSQMLLME------------IKDDRVGAGMVSVTDVDLSHDLQ 60

Query: 182 VVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 241
             K++VS++G+E  K   MAGLK+ A +VR  LG+R++LR TPE+ F+ED S ERG R++
Sbjct: 61  HAKIFVSIYGNEDAKAETMAGLKASAGFVRRELGQRIRLRRTPEVVFLEDSSLERGDRML 120

Query: 242 AILDRIKDKKKDIDDEDFEQ 262
            +LD IK  +   DD+  E+
Sbjct: 121 HLLDHIKTDRPPEDDDSEEE 128

[Close]

BLAST of Lag0009246 vs. ExPASy Swiss-Prot
Match: Q8Z0M8 (Ribosome-binding factor A OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbfA PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.0e-21
Identity = 57/134 (42.54%), Postives = 86/134 (64.18%), Query Frame = 0


Query: 122 MANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQ 181
           MA +RRV  VA+ I+RE+S ML+              +  D+  + + ++TDV+VS DLQ
Sbjct: 1   MATNRRVSRVAELIKREVSQMLIN------------GIKDDRVGTGMVSVTDVDVSGDLQ 60

Query: 182 VVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 241
             K+YVS++G E  K   MAGLKS   +VRS LG R++LR TPE+ FIED S ERG++V+
Sbjct: 61  HAKIYVSIYGTEEAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVL 120

Query: 242 AILDRIKDKKKDID 256
            +L+++++ +   D
Sbjct: 121 TLLNKLENARSPDD 122

[Close]

BLAST of Lag0009246 vs. ExPASy Swiss-Prot
Match: Q93LL7 (Ribosome-binding factor A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rbfA PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.4e-20
Identity = 62/151 (41.06%), Postives = 89/151 (58.94%), Query Frame = 0


Query: 122 MANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQ 181
           MA +RRV  VA+ I+RE+S MLL              +  D+  + + ++TDV+VS DLQ
Sbjct: 1   MATNRRVSRVAELIKREVSQMLLN------------GIKDDRVGTGMVSVTDVDVSGDLQ 60

Query: 182 VVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 241
             K+YVS++G +  K   MAGLKS   YVRS LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 61  HAKIYVSIYGTDEAKVETMAGLKSATGYVRSELGARVRLRRTPEVIFLEDRSIERGNKVL 120

Query: 242 AILDRIK-----------DKKKDIDDEDFEQ 262
           A+L ++            +   D DDE F +
Sbjct: 121 ALLSQLNHDRPPENLLAVEDNTDEDDESFSE 139

[Close]

BLAST of Lag0009246 vs. ExPASy Swiss-Prot
Match: B8HWS1 (Ribosome-binding factor A OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rbfA PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.2e-20
Identity = 59/145 (40.69%), Postives = 92/145 (63.45%), Query Frame = 0


Query: 122 MANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQ 181
           MA  RRV  VA+ I+RE+S ML+            + +  D+  S + ++TDV++S DLQ
Sbjct: 1   MATDRRVARVAELIKREISQMLM------------SGIKDDRVGSGMVSVTDVDLSGDLQ 60

Query: 182 VVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVI 241
             K++VS++G E  +   MAGLK+   YVRS LG R++LR TPE+ F+ED S ERG++V+
Sbjct: 61  HAKIFVSIYGTEAARAETMAGLKAATGYVRSELGHRVRLRRTPEVVFLEDRSLERGTQVL 120

Query: 242 AILDRI---KDKKKDIDDEDFEQSE 264
           ++L+R+   + K  D+D+   E+ E
Sbjct: 121 SLLNRLSEERQKNADLDEMAAEEPE 133

[Close]

BLAST of Lag0009246 vs. ExPASy TrEMBL
Match: A0A6J1G8H2 (probable ribosome-binding factor A, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111451795 PE=3 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 6.3e-104
Identity = 206/227 (90.75%), Postives = 217/227 (95.59%), Query Frame = 0


Query: 61  MPHLLQQIHPQPHHSPLKLSSSLASSRFPSQLQASPPWFCSQSSVALVRQRPTMRGATIR 120
           MPHLLQQIHPQ HH PLKLSSSLASSRFPSQ  ASPP FCS +SVALVR+RP MRGATIR
Sbjct: 1   MPHLLQQIHPQSHHFPLKLSSSLASSRFPSQFLASPPCFCSPNSVALVRRRPVMRGATIR 60

Query: 121 CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 180
           CMANSRRVKMV+KQIQRELS+MLLTDKVLQ+AILPEASLGADKYLSSLTTITDVE+S+DL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 181 QVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 240
           QVVKVYVSVFGDERGKD+AMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 241 IAILDRIKDKKKDIDDEDFEQSELSDAPQDDRDWEGDDADEDIIYVR 288
           IAILDRIKD+K +IDDED EQSELSDAPQDDRDWE DDADEDIIYV+
Sbjct: 181 IAILDRIKDEKNNIDDEDMEQSELSDAPQDDRDWEEDDADEDIIYVQ 227

[Close]

BLAST of Lag0009246 vs. ExPASy TrEMBL
Match: A0A6J1KXB5 (probable ribosome-binding factor A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111499618 PE=3 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 2.4e-103
Identity = 203/227 (89.43%), Postives = 217/227 (95.59%), Query Frame = 0


Query: 61  MPHLLQQIHPQPHHSPLKLSSSLASSRFPSQLQASPPWFCSQSSVALVRQRPTMRGATIR 120
           MPHLLQQIHPQPHH PLKLSSSLASSRFPSQ   SPP FCS +SVALVRQRP MRGATI+
Sbjct: 1   MPHLLQQIHPQPHHFPLKLSSSLASSRFPSQFLTSPPCFCSPNSVALVRQRPVMRGATIQ 60

Query: 121 CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 180
           CMANSRRVKMV+KQIQRELS+MLLTDKVLQ+AILPEASLGADKYLSSLTTITDVE+S+DL
Sbjct: 61  CMANSRRVKMVSKQIQRELSNMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEISSDL 120

Query: 181 QVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 240
           QVVKVYVSVFGDERGKD+AMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDIAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 180

Query: 241 IAILDRIKDKKKDIDDEDFEQSELSDAPQDDRDWEGDDADEDIIYVR 288
           IAILDRIKD+K +IDDED E+SELSDAPQDDRDWE D+ADEDIIY++
Sbjct: 181 IAILDRIKDEKNNIDDEDMEKSELSDAPQDDRDWEEDEADEDIIYIQ 227

[Close]

BLAST of Lag0009246 vs. ExPASy TrEMBL
Match: A0A1S4E1P3 (probable ribosome-binding factor A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497269 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.3e-93
Identity = 198/228 (86.84%), Postives = 206/228 (90.35%), Query Frame = 0


Query: 61  MPH-LLQQIHPQPHHSPLKLSSSLASSRFPSQLQASPPWFCSQSSVALVRQRPTMRGATI 120
           MPH LLQQIHPQ + SPLK SSSL SS FPSQ QAS P F S SSV L+   P MRGATI
Sbjct: 1   MPHLLLQQIHPQFYFSPLKFSSSLQSSPFPSQFQASRPCFYSPSSVNLLPPPPVMRGATI 60

Query: 121 RCMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSAD 180
           RCMANSRRVKMVAKQIQRELSDMLLTDKVLQ+AILPEASLGADKYLSSLTTITDVEVSAD
Sbjct: 61  RCMANSRRVKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD 120

Query: 181 LQVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSR 240
           LQVVKVYVSVFGDE+GKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEI FIEDESFERGSR
Sbjct: 121 LQVVKVYVSVFGDEKGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEICFIEDESFERGSR 180

Query: 241 VIAILDRIKDKKKDIDDEDFEQSELSDAPQDDRDWEGDDADEDIIYVR 288
           VIAILDRIKDKKKD  DEDF++ ELSDA  DDRDW+GDDADEDIIYV+
Sbjct: 181 VIAILDRIKDKKKDTIDEDFDEPELSDALDDDRDWKGDDADEDIIYVQ 228

[Close]

BLAST of Lag0009246 vs. ExPASy TrEMBL
Match: A0A5A7TVW4 (Putative ribosome-binding factor A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00030 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.3e-93
Identity = 198/228 (86.84%), Postives = 206/228 (90.35%), Query Frame = 0


Query: 61  MPH-LLQQIHPQPHHSPLKLSSSLASSRFPSQLQASPPWFCSQSSVALVRQRPTMRGATI 120
           MPH LLQQIHPQ + SPLK SSSL SS FPSQ QAS P F S SSV L+   P MRGATI
Sbjct: 1   MPHLLLQQIHPQFYFSPLKFSSSLQSSPFPSQFQASRPCFYSPSSVNLLPPPPVMRGATI 60

Query: 121 RCMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSAD 180
           RCMANSRRVKMVAKQIQRELSDMLLTDKVLQ+AILPEASLGADKYLSSLTTITDVEVSAD
Sbjct: 61  RCMANSRRVKMVAKQIQRELSDMLLTDKVLQFAILPEASLGADKYLSSLTTITDVEVSAD 120

Query: 181 LQVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSR 240
           LQVVKVYVSVFGDE+GKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEI FIEDESFERGSR
Sbjct: 121 LQVVKVYVSVFGDEKGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEICFIEDESFERGSR 180

Query: 241 VIAILDRIKDKKKDIDDEDFEQSELSDAPQDDRDWEGDDADEDIIYVR 288
           VIAILDRIKDKKKD  DEDF++ ELSDA  DDRDW+GDDADEDIIYV+
Sbjct: 181 VIAILDRIKDKKKDTIDEDFDEPELSDALDDDRDWKGDDADEDIIYVQ 228

[Close]

BLAST of Lag0009246 vs. ExPASy TrEMBL
Match: A0A6J1CYL8 (probable ribosome-binding factor A, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015387 PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 7.3e-92
Identity = 191/227 (84.14%), Postives = 200/227 (88.11%), Query Frame = 0


Query: 61  MPHLLQQIHPQPHHSPLKLSSSLASSRFPSQLQASPPWFCSQSSVALVRQRPTMRGATIR 120
           MPHLLQQIHP P+HSPLKLSSS      P Q Q  PPW  S + +AL+R RP   GATIR
Sbjct: 1   MPHLLQQIHPHPYHSPLKLSSSTR----PFQFQPPPPWISSPNPIALLRPRPVTGGATIR 60

Query: 121 CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 180
           CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL
Sbjct: 61  CMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADL 120

Query: 181 QVVKVYVSVFGDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRV 240
           QVVKVYVSVFGDERGKDVA+AGLKSKAKYVRSVLG+RMKLRLTPEIRFIEDESFERGSRV
Sbjct: 121 QVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGRRMKLRLTPEIRFIEDESFERGSRV 180

Query: 241 IAILDRIKDKKKDIDDEDFEQSELSDAPQDDRDWEGDDADEDIIYVR 288
           IAILDRIKD+KKD      E SELS+ PQDDRDWEGDDADEDIIYV+
Sbjct: 181 IAILDRIKDEKKDT-----ELSELSNTPQDDRDWEGDDADEDIIYVQ 218

[Close]

BLAST of Lag0009246 vs. TAIR 10
Match: AT4G34730.1 (ribosome-binding factor A family protein )

HSP 1 Score: 241.1 bits (614), Expect = 1.1e-63
Identity = 143/217 (65.90%), Postives = 167/217 (76.96%), Query Frame = 0


Query: 73  HHSPL-KLSSSLASSRFPSQLQASPPWFCSQSSVALVRQRPTMR-GATIRCMANSRRVKM 132
           HH P+  +SS   +  FP              S+A V  R  +    T+RCMAN RRVKM
Sbjct: 16  HHPPIYTVSSKTQAFHFP-------------QSMAPVNLRTNLSVRRTVRCMANPRRVKM 75

Query: 133 VAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQVVKVYVSVF 192
           VAKQI RELSDMLLTD VLQ+A+LPEA+LGAD+YLSSLTTI+DVEVS DLQVVKVYVSVF
Sbjct: 76  VAKQIMRELSDMLLTDTVLQHAVLPEAALGADRYLSSLTTISDVEVSNDLQVVKVYVSVF 135

Query: 193 GDERGKDVAMAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAILDRIKDK 252
           GD+RGKDVA+AGLKSKAKYVRS LGKRMKLRLTPE+RFIEDE+ ERGSRVIAILD+IK +
Sbjct: 136 GDDRGKDVAIAGLKSKAKYVRSELGKRMKLRLTPEVRFIEDEAMERGSRVIAILDKIKAE 195

Query: 253 KKDIDDEDFEQSELSDAPQDDRDWEGDDADEDIIYVR 288
           K   +     ++E SD+ +DD+DWE DD DEDIIYV+
Sbjct: 196 KGSGEG----KTEPSDSTEDDQDWEVDDPDEDIIYVK 215

The following BLAST results are available for this feature:

BLAST of Lag0009246 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948118.1	1.3e-103	90.75	probable ribosome-binding factor A, chloroplastic [Cucurbita moschata]	[more]
XP_023006992.1	5.0e-103	89.43	probable ribosome-binding factor A, chloroplastic [Cucurbita maxima]	[more]
KAG6605037.1	8.5e-103	91.11	putative ribosome-binding factor A, chloroplastic, partial [Cucurbita argyrosper...	[more]
XP_023534592.1	1.9e-102	89.43	probable ribosome-binding factor A, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_038900542.1	6.7e-100	90.75	probable ribosome-binding factor A, chloroplastic [Benincasa hispida]	[more]

BLAST of Lag0009246 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65693	1.5e-62	65.90	Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
B0JRP8	5.0e-21	42.14	Ribosome-binding factor A OS=Microcystis aeruginosa (strain NIES-843) OX=449447 ...	[more]
Q8Z0M8	5.0e-21	42.54	Ribosome-binding factor A OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576...	[more]
Q93LL7	1.4e-20	41.06	Ribosome-binding factor A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) ...	[more]
B8HWS1	3.2e-20	40.69	Ribosome-binding factor A OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39...	[more]

BLAST of Lag0009246 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G8H2	6.3e-104	90.75	probable ribosome-binding factor A, chloroplastic OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1KXB5	2.4e-103	89.43	probable ribosome-binding factor A, chloroplastic OS=Cucurbita maxima OX=3661 GN...	[more]
A0A1S4E1P3	1.3e-93	86.84	probable ribosome-binding factor A, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5A7TVW4	1.3e-93	86.84	Putative ribosome-binding factor A OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1CYL8	7.3e-92	84.14	probable ribosome-binding factor A, chloroplastic OS=Momordica charantia OX=3673...	[more]

BLAST of Lag0009246 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34730.1	1.1e-63	65.90	ribosome-binding factor A family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000238	Ribosome-binding factor A	TIGRFAM	TIGR00082	TIGR00082	coord: 122..248 e-value: 7.9E-24 score: 82.4
IPR000238	Ribosome-binding factor A	PFAM	PF02033	RBFA	coord: 127..244 e-value: 1.7E-27 score: 96.0
IPR000238	Ribosome-binding factor A	PANTHER	PTHR33515	RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED	coord: 111..286
IPR000238	Ribosome-binding factor A	HAMAP	MF_00003	RbfA	coord: 126..244 score: 22.148361
IPR015946	K homology domain-like, alpha/beta	GENE3D	3.30.300.20		coord: 122..238 e-value: 2.1E-35 score: 123.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..287
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..52
IPR020053	Ribosome-binding factor A, conserved site	PROSITE	PS01319	RBFA	coord: 210..231
IPR023799	Ribosome-binding factor A domain superfamily	SUPERFAMILY	89919	Ribosome-binding factor A, RbfA	coord: 122..247

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0009246.1	Lag0009246.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0043024	ribosomal small subunit binding