Lag0009237 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0009237
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr9: 37169077 .. 37170567 (+)
RNA-Seq ExpressionLag0009237
SyntenyLag0009237
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCGCTGCAGTTCCTTTTCTCCAAGTACGAAGGTGCTCCTTCTCCAAGTTCGGAGGCTCTTACATTGCTGCGATGCAGTTCCTTCCTCCAAGTTCGAAGGTAGGTTCTCACGTTGCTTCGCCGTAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTACGAAAGTTCTCTCCTCCAAGTCGAATGTTCTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTTCATGTGCTTTGTTGCAGTTCCTTCTCTCCAAGTTCAATGGTTCTCACGCATTTCGCTACAGTTCCTTCCTCCAAGTTCGAATCCTTCCTCCAAGTTCGAAGGTTCACACGCGCTTGCTTCGCCACAGTTCCTTCCTCCAAGTTCGAATCCTTCCTCCAAGTTCGAAGGTTCTCACGGGTTCACACGCGCTTCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGCGCTTCGCCACAGTTCCCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACAGTTCCTCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCCCTTCCGTTCTCACGCGCTTTGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCAAAGGTTCACACGCGCATCGCCACACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCTCGAAGGTTCACACGCGCATCGCCACAGTTCCTTCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACAGTTCCTTCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACAGTTCCCCTTCCTCCAAGTTCGAAGGTTGAGCATCGCCACAGTTCTCCTTCCTCCAAGTTCGAAGGTTCTCATTTCTCACGCGCATCGCCACAGTTCTCCTTCCTCCAAGTTCGAAGGTTCTCATTTCTCACGCGCATCGCCACAGTTCTCCTTCCTCCAAGTTCGAAGGTTCTCATTTCTCACGCGCATCGCCACAGTTCCCCTTCCTCCAAGTTCGAAGGTTTTCTCACGCGTTCCTTCCTCCGCGCTTCGCCACAGTTCCTTTCGAACTCCTCCCTCCAAGTTTGA

mRNA sequence

ATGTTTCGCTGCAGTTCCTTTTCTCCAAGTACGAAGGTGCTCCTTCTCCAAGTTCGGAGGCTCTTACATTGCTGCGATGCAGTTCCTTCCTCCAAGTTCGAAGGTAGGTTCTCACGTTGCTTCGCCGTAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTACGAAAGTTCTCTCCTCCAAGTCGAATGTTCTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTTCATGTGCTTTGTTGCAGTTCCTTCTCTCCAAGTTCAATGGTTCTCACGCATTTCGCTACAGTTCCTTCCTCCAAGTTCGAATCCTTCCTCCAAGTTCGAAGGTTCACACGCGCTTGCTTCGCCACAGTTCCTTCCTCCAAGTTCGAATCCTTCCTCCAAGTTCGAAGGTTCTCACGGGTTCACACGCGCTTCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGCGCTTCGCCACAGTTCCCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACAGTTCCTCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCCCTTCCGTTCTCACGCGCTTTGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCAAAGGTTCACACGCGCATCGCCACACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCTCGAAGGTTCACACGCGCATCGCCACAGTTCCTTCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACAGTTCCTTCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACAGTTCCCCTTCCTCCAAGTTCGAAGGTTGAGCATCGCCACAGTTCTCCTTCCTCCAAGTTCGAAGGTTCTCATTTCTCACGCGCATCGCCACAGTTCTCCTTCCTCCAAGTTCGAAGGTTCTCATTTCTCACGCGCATCGCCACAGTTCTCCTTCCTCCAAGTTCGAAGGTTCTCATTTCTCACGCGCATCGCCACAGTTCCCCTTCCTCCAAGTTCGAAGGTTTTCTCACGCGTTCCTTCCTCCGCGCTTCGCCACAGTTCCTTTCGAACTCCTCCCTCCAAGTTTGA

Coding sequence (CDS)

ATGTTTCGCTGCAGTTCCTTTTCTCCAAGTACGAAGGTGCTCCTTCTCCAAGTTCGGAGGCTCTTACATTGCTGCGATGCAGTTCCTTCCTCCAAGTTCGAAGGTAGGTTCTCACGTTGCTTCGCCGTAGTTCCTTCTCTCCAAGTACGAAGGTTCTCTCCTCCAAGTACGAAAGTTCTCTCCTCCAAGTCGAATGTTCTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTTCATGTGCTTTGTTGCAGTTCCTTCTCTCCAAGTTCAATGGTTCTCACGCATTTCGCTACAGTTCCTTCCTCCAAGTTCGAATCCTTCCTCCAAGTTCGAAGGTTCACACGCGCTTGCTTCGCCACAGTTCCTTCCTCCAAGTTCGAATCCTTCCTCCAAGTTCGAAGGTTCTCACGGGTTCACACGCGCTTCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGCGCTTCGCCACAGTTCCCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACAGTTCCTCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCCCTTCCGTTCTCACGCGCTTTGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCAAAGGTTCACACGCGCATCGCCACACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCTCGAAGGTTCACACGCGCATCGCCACAGTTCCTTCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACAGTTCCTTCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACAGTTCCCCTTCCTCCAAGTTCGAAGGTTGAGCATCGCCACAGTTCTCCTTCCTCCAAGTTCGAAGGTTCTCATTTCTCACGCGCATCGCCACAGTTCTCCTTCCTCCAAGTTCGAAGGTTCTCATTTCTCACGCGCATCGCCACAGTTCTCCTTCCTCCAAGTTCGAAGGTTCTCATTTCTCACGCGCATCGCCACAGTTCCCCTTCCTCCAAGTTCGAAGGTTTTCTCACGCGTTCCTTCCTCCGCGCTTCGCCACAGTTCCTTTCGAACTCCTCCCTCCAAGTTTGA

Protein sequence

MFRCSSFSPSTKVLLLQVRRLLHCCDAVPSSKFEGRFSRCFAVVPSLQVRRFSPPSTKVLSSKSNVLSRCFAAVPSSKFEGFHVLCCSSFSPSSMVLTHFATVPSSKFESFLQVRRFTRACFATVPSSKFESFLQVRRFSRVHTRFATVPSSKFEGSHALRHSSFLQVRRFSRASPQFLPPSSKVLTRIATVPSSKFEGSHAHRHSSFLQVRRFSRASPQFLPPSSKVHTRFATVPLPPSSKVHTRISPQFLPPSSKVHTRIATVPLPPSSKVLTRIATVPLPFSRALFEGSHAHRHSSFLQVRRFSRASPQFLPPSSKVHTRIATQFLPPSSKVLTRIATVPSSKFEGSHAHRHSSFLQVLEGSHAHRHSSFFLQVRRFTRASPQFLLPPSSKVHTRIATVPLPPSSKVEHRHSSPSSKFEGSHFSRASPQFSFLQVRRFSFLTRIATVLLPPSSKVLISHAHRHSSPSSKFEGFLTRSFLRASPQFLSNSSLQV
Homology
[Close]
BLAST of Lag0009237 vs. NCBI nr
Match: XP_009061288.1 (hypothetical protein LOTGIDRAFT_126799, partial [Lottia gigantea] >ESO87973.1 hypothetical protein LOTGIDRAFT_126799, partial [Lottia gigantea])

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-06
Identity = 80/239 (33.47%), Postives = 110/239 (46.03%), Query Frame = 0 

Query: 179 LPPSSKVL--TRIATVPSSKFEGSHAHRHSSFLQVRRFSRASPQFLPPSSKVHTRFATVP 238
           LPPSSK+L   +I ++P S          S  L   +      + LPPS+K+   +   P
Sbjct: 7   LPPSSKLLFTYKIESLPPS----------SKLLLTYKI-----ELLPPSTKLLLTYKIEP 66

Query: 239 LPPSSKVHTRISPQFLPPSSKVHTRIATVPLPPSSKVLT--RIATVPLPFSRALFEGSHA 298
           LPPSSK+      + LPPS+K+       PLPPSSK+L   +I  +P P S+ L      
Sbjct: 67  LPPSSKLLLTYKIELLPPSTKLLLTYKIEPLPPSSKLLLTYKIELLP-PSSKLLLTYKIE 126

Query: 299 HRHSSFLQVRRFSRASPQFLPPSSKVHTRIATQFLPPSSKVLTRI---ATVPSSKFEGSH 358
              SS   +  +       LPPSSK+      + LPPSSK+L      +  PSSK     
Sbjct: 127 LLPSSSKLLLTYKIG---LLPPSSKLLFTYKIEPLPPSSKLLLTYKIESLPPSSKL---- 186

Query: 359 AHRHSSFLQVLEGSHAHRHSSFFLQVRRFTRASPQFLLPPSSKVHTRIATVPLPPSSKV 411
              H+  +++L  S     S   L  +         LLPPSSK+       PLPPSSK+
Sbjct: 187 --LHTYKIELLPSS-----SKLLLTYK-------IGLLPPSSKLLLTYKIEPLPPSSKL 208

[Close]
BLAST of Lag0009237 vs. ExPASy TrEMBL
Match: V3ZAI0 (Uncharacterized protein (Fragment) OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_126799 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.5e-07
Identity = 80/239 (33.47%), Postives = 110/239 (46.03%), Query Frame = 0 

Query: 179 LPPSSKVL--TRIATVPSSKFEGSHAHRHSSFLQVRRFSRASPQFLPPSSKVHTRFATVP 238
           LPPSSK+L   +I ++P S          S  L   +      + LPPS+K+   +   P
Sbjct: 7   LPPSSKLLFTYKIESLPPS----------SKLLLTYKI-----ELLPPSTKLLLTYKIEP 66

Query: 239 LPPSSKVHTRISPQFLPPSSKVHTRIATVPLPPSSKVLT--RIATVPLPFSRALFEGSHA 298
           LPPSSK+      + LPPS+K+       PLPPSSK+L   +I  +P P S+ L      
Sbjct: 67  LPPSSKLLLTYKIELLPPSTKLLLTYKIEPLPPSSKLLLTYKIELLP-PSSKLLLTYKIE 126

Query: 299 HRHSSFLQVRRFSRASPQFLPPSSKVHTRIATQFLPPSSKVLTRI---ATVPSSKFEGSH 358
              SS   +  +       LPPSSK+      + LPPSSK+L      +  PSSK     
Sbjct: 127 LLPSSSKLLLTYKIG---LLPPSSKLLFTYKIEPLPPSSKLLLTYKIESLPPSSKL---- 186

Query: 359 AHRHSSFLQVLEGSHAHRHSSFFLQVRRFTRASPQFLLPPSSKVHTRIATVPLPPSSKV 411
              H+  +++L  S     S   L  +         LLPPSSK+       PLPPSSK+
Sbjct: 187 --LHTYKIELLPSS-----SKLLLTYK-------IGLLPPSSKLLLTYKIEPLPPSSKL 208

[Close]
BLAST of Lag0009237 vs. ExPASy TrEMBL
Match: A0A3P9LJU9 (Uncharacterized protein OS=Oryzias latipes OX=8090 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-04
Identity = 77/286 (26.92%), Postives = 114/286 (39.86%), Query Frame = 0 

Query: 180 PPSSKVLTRIATVPSSKFEGSHAHRHSSFLQVRRF-SRASPQF-----LPPSSKVHTRFA 239
           PP+ K+ TR    P           HS      +  SRA P        PP+ K+H+R  
Sbjct: 271 PPTPKIHTRAPPTPKI---------HSRAPPTPKIHSRAPPTTKLHTRAPPTPKIHSRAP 330

Query: 240 TVP-----LPPSSKVHTRISPQFLPPSSKVHTRIATVP-----LPPSSKVLTRIATVPLP 299
             P      PP++K+HTR      PP+ K+H+R    P      PP++K+LTR    P  
Sbjct: 331 PTPKIHSRAPPTTKLHTR-----APPTPKIHSRAPPTPKIHSRAPPTTKLLTRAPPTPKI 390

Query: 300 FSRALFEGSHAHRHSSFLQVRRFSRASPQF---LPPSSKVHTRIATQFLPPSSKVLTRIA 359
            SRA        R     ++   +  +P+     PP+ K+HTR      PP+ K+ TR  
Sbjct: 391 HSRAPPTPKIHSRAPPTTKLHTRAPPTPKIHTRAPPTPKIHTR-----APPTPKIHTRAP 450

Query: 360 TVPSSKFEGSHAHRHSSFLQVLEGSHAHR------HSSFFLQVRRFTRASP----QFLLP 419
             P          +  +        H         H+      +  TRA P        P
Sbjct: 451 PTPKIHSRAQPTPKIHTRAPPTPKIHTRAPPTPKIHTRATPTTKLHTRAPPTPKIHTRAP 510

Query: 420 PSSKVHTRIATVP-----LPPSSKVEHRHSSPSSKFEGSHFSRASP 432
           P++K+HTR    P      PP+ K+ H  ++P++K      SRA P
Sbjct: 511 PTTKLHTRAPPTPKIHTRAPPTPKI-HTRATPTTKLH----SRAPP 532

The following BLAST results are available for this feature:
BLAST of Lag0009237 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_009061288.12.0e-0633.47hypothetical protein LOTGIDRAFT_126799, partial [Lottia gigantea] >ESO87973.1 hy... [more]
BLAST of Lag0009237 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0009237 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
V3ZAI09.5e-0733.47Uncharacterized protein (Fragment) OS=Lottia gigantea OX=225164 GN=LOTGIDRAFT_12... [more]
A0A3P9LJU94.4e-0426.92Uncharacterized protein OS=Oryzias latipes OX=8090 PE=4 SV=1[more]
BLAST of Lag0009237 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0009237.1Lag0009237.1mRNA