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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGATGCCTCGAAAGATCTGGAACAGAATTTAGATGAGTATAATCGAATTACTCTAGATCTAAATAATATAGGTAAGGCTGTATCTGATGAGAATAAGGTTATAATACTGTTAAATTCCCTTCCAAATTCTTATAATGAGGTGAAAACCACAATCAAATATGGTAGAGATAGTTTAACTATGGAAATTGTACTGAATGCTCTTAGATCCAGAGACCTAGAAATGAAAAAGGCAAAGGAAAAAATAATGAGGCTTTGGATAGCAAGAGGAAGAACTGAAAAGAAATCCTCTAAAGGTACTAGTAGCAGTCGGGGTAGATCTAAGTCCCAAGGGAAAACCAAGAGGTGTTATTATTGTCAAAAGGAGGGGCACATTAGAAGAAACTGTTATGAATTAAAGAATAAGAGGAAGAATGAAGGTAAAAAGGAAGAGGAACCTCACAATGTGAATGTTTCAGAGGGTTATGATTTTGCTGTAGTGCTGATGGTTTCTGAAATTGAAATTAATAGTGATTGA mRNA sequence ATGGATGCCTCGAAAGATCTGGAACAGAATTTAGATGAGTATAATCGAATTACTCTAGATCTAAATAATATAGGTAAGGCTGTATCTGATGAGAATAAGGTTATAATACTGTTAAATTCCCTTCCAAATTCTTATAATGAGGTGAAAACCACAATCAAATATGGTAGAGATAGTTTAACTATGGAAATTGTACTGAATGCTCTTAGATCCAGAGACCTAGAAATGAAAAAGGCAAAGGAAAAAATAATGAGGCTTTGGATAGCAAGAGGAAGAACTGAAAAGAAATCCTCTAAAGGTACTAGTAGCAGTCGGGGTAGATCTAAGTCCCAAGGGAAAACCAAGAGGTGTTATTATTGTCAAAAGGAGGGGCACATTAGAAGAAACTGTTATGAATTAAAGAATAAGAGGAAGAATGAAGGTAAAAAGGAAGAGGAACCTCACAATGTGAATGTTTCAGAGGGTTATGATTTTGCTGTAGTGCTGATGGTTTCTGAAATTGAAATTAATAGTGATTGA Coding sequence (CDS) ATGGATGCCTCGAAAGATCTGGAACAGAATTTAGATGAGTATAATCGAATTACTCTAGATCTAAATAATATAGGTAAGGCTGTATCTGATGAGAATAAGGTTATAATACTGTTAAATTCCCTTCCAAATTCTTATAATGAGGTGAAAACCACAATCAAATATGGTAGAGATAGTTTAACTATGGAAATTGTACTGAATGCTCTTAGATCCAGAGACCTAGAAATGAAAAAGGCAAAGGAAAAAATAATGAGGCTTTGGATAGCAAGAGGAAGAACTGAAAAGAAATCCTCTAAAGGTACTAGTAGCAGTCGGGGTAGATCTAAGTCCCAAGGGAAAACCAAGAGGTGTTATTATTGTCAAAAGGAGGGGCACATTAGAAGAAACTGTTATGAATTAAAGAATAAGAGGAAGAATGAAGGTAAAAAGGAAGAGGAACCTCACAATGTGAATGTTTCAGAGGGTTATGATTTTGCTGTAGTGCTGATGGTTTCTGAAATTGAAATTAATAGTGATTGA Protein sequence MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLTMEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGTSSSRGRSKSQGKTKRCYYCQKEGHIRRNCYELKNKRKNEGKKEEEPHNVNVSEGYDFAVVLMVSEIEINSD
Homology
BLAST of Lag0009159 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 150.2 bits (378), Expect = 1.6e-32 Identity = 91/177 (51.41%), Postives = 125/177 (70.62%), Query Frame = 0
Query: 1 MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLT 60
MD SK LE+NLDE+ +I +DLNNIG+ +SDEN+ +ILLNSLP +Y EVK IKYGRDSLT
Sbjct: 111 MDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLT 170
Query: 61 MEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGTSSSRGRSKSQGKTKRCYYCQ 120
M IVL+AL++R+LE+KK + K L +ARGR+EKKS KG S RSKS+GK+++C+ C
Sbjct: 171 MSIVLDALKTRNLEIKK-ERKDGELLMARGRSEKKSWKGKERS-FRSKSKGKSRKCFLCH 230
Query: 121 KEGHIRRNCYELKNKR--KNEGKKEEEPHNVNVSEGYD-------FAVVLMVSEIEI 169
KEGH ++NC K++ +E + ++ +++GYD A VLMVS +I
Sbjct: 231 KEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGYDSAETGYESAEVLMVSHRDI 285
BLAST of Lag0009159 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 150.2 bits (378), Expect = 1.6e-32 Identity = 91/177 (51.41%), Postives = 125/177 (70.62%), Query Frame = 0
Query: 1 MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLT 60
MD SK LE+NLDE+ +I +DLNNIG+ +SDEN+ +ILLNSLP +Y EVK IKYGRDSLT
Sbjct: 111 MDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLT 170
Query: 61 MEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGTSSSRGRSKSQGKTKRCYYCQ 120
M IVL+AL++R+LE+KK + K L +ARGR+EKKS KG S RSKS+GK+++C+ C
Sbjct: 171 MSIVLDALKTRNLEIKK-ERKDGELLMARGRSEKKSWKGKERS-FRSKSKGKSRKCFLCH 230
Query: 121 KEGHIRRNCYELKNKR--KNEGKKEEEPHNVNVSEGYD-------FAVVLMVSEIEI 169
KEGH ++NC K++ +E + ++ +++GYD A VLMVS +I
Sbjct: 231 KEGHFKKNCPLNKSREASTSEANVTDGYNSAEITDGYDSAETGYESAEVLMVSHRDI 285
BLAST of Lag0009159 vs. NCBI nr
Match: KAA0043826.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 149.4 bits (376), Expect = 2.7e-32 Identity = 92/178 (51.69%), Postives = 121/178 (67.98%), Query Frame = 0
Query: 1 MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLT 60
MD SK LE+NLDE+ +I +DLNNIG+ +SDEN+ +ILLNSLP +Y EVK IKYGRDSLT
Sbjct: 1 MDQSKSLEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLT 60
Query: 61 MEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGTSSSRGRSKSQGKTKRCYYCQ 120
M IVL+AL++R+LE+KK + K L +ARGR+EKKS KG S RSKS+GK+++C+ C
Sbjct: 61 MSIVLDALKTRNLEIKK-ERKDGELLMARGRSEKKSWKGKERS-FRSKSKGKSRKCFLCH 120
Query: 121 KEGHIRRNCYELKNKRKNEGKKEEEPHNVNVSE----------GYDFAVVLMVSEIEI 169
KEGH ++NC L R+ + N +E GY+ A VLMVS +I
Sbjct: 121 KEGHFKKNC-PLNKSREASTSEANVTDGYNSAEITNGYDSAETGYESAEVLMVSHRDI 175
BLAST of Lag0009159 vs. NCBI nr
Match: KAA0067607.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] >TYJ97155.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]) HSP 1 Score: 146.4 bits (368), Expect = 2.3e-31 Identity = 88/170 (51.76%), Postives = 123/170 (72.35%), Query Frame = 0
Query: 1 MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLT 60
MD SK LE+NLDE+ +I +DL+NIG+ +SDEN+ +ILLNSLP +Y EVK IKYGRDSLT
Sbjct: 107 MDQSKSLEENLDEFQKIIVDLSNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLT 166
Query: 61 MEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGTSSSRGRSKSQGKTKRCYYCQ 120
M IVL+AL++R+LE+KK + K L +ARGR+EKKS KG S RSKS+GK+++C+ C
Sbjct: 167 MSIVLDALKTRNLEIKK-ERKDGELLMARGRSEKKSWKGKERS-SRSKSKGKSRKCFLCH 226
Query: 121 KEGHIRRNCYELKNKR--KNEGKKEEEPHNVNVSEGYDFAVVLMVSEIEI 169
K GH ++NC K++ +E + + +++GY+ A VLMVS +I
Sbjct: 227 K-GHFKKNCPLNKSREASTSEANVTDGYNFAEITDGYESAEVLMVSHRDI 273
BLAST of Lag0009159 vs. NCBI nr
Match: KAA0047995.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]) HSP 1 Score: 145.2 bits (365), Expect = 5.2e-31 Identity = 91/178 (51.12%), Postives = 120/178 (67.42%), Query Frame = 0
Query: 1 MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLT 60
MD SK LE+NLDE+ +I +DLNNIG+ +SDEN+ +ILLNSLP +Y EVK IKYG DSLT
Sbjct: 111 MDQSKILEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGWDSLT 170
Query: 61 MEIVLNALRSRDLEMKKAKEKIMRLWIARGRTEKKSSKGTSSSRGRSKSQGKTKRCYYCQ 120
M IVL+AL++R+LE+KK + K L +ARGR+EKKS KG S RSKS+GK+++C+ C
Sbjct: 171 MSIVLDALKTRNLEIKK-ERKDGELLMARGRSEKKSWKGKERS-FRSKSKGKSRKCFLCH 230
Query: 121 KEGHIRRNCYELKNKRKNEGKKEEEPHNVNVSE----------GYDFAVVLMVSEIEI 169
KEGH ++NC L R+ + N +E GY+ A VLMVS +I
Sbjct: 231 KEGHFKKNC-PLNKSREASTSEANVTDGYNSAEITDGCDSAETGYESAEVLMVSHRDI 285
BLAST of Lag0009159 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.9e-12 Identity = 56/174 (32.18%), Postives = 100/174 (57.47%), Query Frame = 0
Query: 1 MDASKDLEQNLDEYNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIKYGRDSLT 60
M + +L+ +N + L N+G + +E+K I+LLNSLP+SY+ + TTI +G+ ++
Sbjct: 112 MSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIE 171
Query: 61 MEIVLNALRSRDLEMKKAKEKIMRLWI-ARGRTEKKSSK--GTSSSRGRSKSQGKT--KR 120
++ V +AL + KK + + L RGR+ ++SS G S +RG+SK++ K+ +
Sbjct: 172 LKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRN 231
Query: 121 CYYCQKEGHIRRNCYELKNKRKNEGKKEEEPHNVNVSE--GYDFAVVLMVSEIE 168
CY C + GH +R+C N RK +G+ + ++ N + + VVL ++E E
Sbjct: 232 CYNCNQPGHFKRDC---PNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEE 282
BLAST of Lag0009159 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 45.4 bits (106), Expect = 7.3e-04 Identity = 39/158 (24.68%), Postives = 77/158 (48.73%), Query Frame = 0
Query: 14 YNRITLDLNNIGKAVSDENKVIILLNSLPNSYNEVKTTIK-YGRDSLTMEIVLNALRSRD 73
++ + +L G + + +K+ LL +LP+ Y+ + T I+ ++LT+ V N L ++
Sbjct: 121 FDELISELLAAGAKIEEMDKISHLLITLPSCYDGIITAIETLSEENLTLAFVKNRLLDQE 180
Query: 74 LEMKK----AKEKIMRLWIARGRTEKKS-------SKGTSSSRGRSKSQGKTKRCYYCQK 133
+++K +K+M + K+ +K +G SK + K C++C +
Sbjct: 181 IKIKNDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVK---CHHCGR 240
Query: 134 EGHIRRNCYELKNKRKNEGKKEEEPHNVNVSEGYDFAV 160
EGHI+++C+ K N+ K+ E+ S G F V
Sbjct: 241 EGHIKKDCFHYKRILNNKNKENEKQVQTATSHGIAFMV 275
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| TYK25306.1 | 1.6e-32 | 51.41 | putative gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
| KAA0050719.1 | 1.6e-32 | 51.41 | putative gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
| KAA0043826.1 | 2.7e-32 | 51.69 | putative gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
| KAA0067607.1 | 2.3e-31 | 51.76 | retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]... | [more] |
| KAA0047995.1 | 5.2e-31 | 51.12 | retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| P10978 | 1.9e-12 | 32.18 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
| P04146 | 7.3e-04 | 24.68 | Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3 | [more] |
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001878 | Zinc finger, CCHC-type | SMART | SM00343 | c2hcfinal6 | coord: 115..131
e-value: 0.003
score: 26.7 |
| IPR001878 | Zinc finger, CCHC-type | PROSITE | PS50158 | ZF_CCHC | coord: 115..129
score: 9.504374 |
| None | No IPR available | GENE3D | 4.10.60.10 | | coord: 87..146
e-value: 6.4E-7
score: 31.1 |
| None | No IPR available | PFAM | PF14223 | Retrotran_gag_2 | coord: 1..76
e-value: 2.4E-12
score: 46.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 92..113 |
| IPR036875 | Zinc finger, CCHC-type superfamily | SUPERFAMILY | 57756 | Retrovirus zinc finger-like domains | coord: 98..137 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
|
