Lag0009131 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0009131
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLOB domain-containing protein
Locationchr9: 35767841 .. 35768145 (-)
RNA-Seq ExpressionLag0009131
SyntenyLag0009131
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGGATACGGCAGAATCGAGCACCAATTTGTGGAGGGATATGAAGGGGAAGGGTTCGTGGTCGGGGAAAATGAGAATCGAGAGAGTTTGGAAGAGGAAGTGGAGGTTTGGGGGATTTAGGATTCGGGAATTTCGTCATCGTCTTCGTTGCAATTGAAACAGGGCGACGACTCTGTTAATGATTTTGATGATATAATTAACAGATCTCCATCGGTGAGATCTGGTCGCCGTCGAAGCTGTTGTGGAAGATTTGGTTGTCGTTGATAAGGGGAAGAAGACGAGGGTTTGAGTTTCATCCGTGA

mRNA sequence

ATGAGCGGATACGGCAGAATCGAGCACCAATTTGTGGAGGGATATGAAGGGGAAGGGTTCGTGGTCGGGGAAAATGAGAATCGAGAGAGTTTGGAAGAGGAAGTGGAGATCTCCATCGGTGAGATCTGGTCGCCGTCGAAGCTGTTGTGGAAGATTTGGTTGTCGTTGATAAGGGGAAGAAGACGAGGGTTTGAGTTTCATCCGTGA

Coding sequence (CDS)

ATGAGCGGATACGGCAGAATCGAGCACCAATTTGTGGAGGGATATGAAGGGGAAGGGTTCGTGGTCGGGGAAAATGAGAATCGAGAGAGTTTGGAAGAGGAAGTGGAGATCTCCATCGGTGAGATCTGGTCGCCGTCGAAGCTGTTGTGGAAGATTTGGTTGTCGTTGATAAGGGGAAGAAGACGAGGGTTTGAGTTTCATCCGTGA

Protein sequence

MSGYGRIEHQFVEGYEGEGFVVGENENRESLEEEVEISIGEIWSPSKLLWKIWLSLIRGRRRGFEFHP
Homology
[Close]
BLAST of Lag0009131 vs. NCBI nr
Match: XP_038899918.1 (LOB domain-containing protein 22 [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 7.9e-07
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 1   MSGYGRIEHQFVEGYEGEGFVVGENENRESLEEE 35
           MSGYG IEHQFVEGYEGEGFVVGENEN ESLE++
Sbjct: 156 MSGYGGIEHQFVEGYEGEGFVVGENENGESLEDQ 189

[Close]
BLAST of Lag0009131 vs. NCBI nr
Match: XP_011659803.2 (LOB domain-containing protein 22 [Cucumis sativus] >KGN45524.1 hypothetical protein Csa_015647 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 7.9e-07
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 1   MSGYGRIEHQFVEGYEGEGFVVGENENRESLE-EEVEI 38
           M+GYG IEHQFVEGYEGEGFVVGENEN ESLE +EVE+
Sbjct: 155 MTGYGGIEHQFVEGYEGEGFVVGENENGESLEDQEVEV 192

[Close]
BLAST of Lag0009131 vs. NCBI nr
Match: KAG7014013.1 (LOB domain-containing protein 22, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 1   MSGYGRIEHQFVEGYEGEGFVVGENENRESLE-EEVEI 38
           MSGYG +EHQFVEGY GEGFVVGENENRE+LE +EVE+
Sbjct: 159 MSGYGGLEHQFVEGYGGEGFVVGENENRETLEDQEVEV 196

[Close]
BLAST of Lag0009131 vs. NCBI nr
Match: KAG6575472.1 (LOB domain-containing protein 22, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 1   MSGYGRIEHQFVEGYEGEGFVVGENENRESLE-EEVEI 38
           MSGYG +EHQFVEGY GEGFVVGENENRE+LE +EVE+
Sbjct: 159 MSGYGGLEHQFVEGYGGEGFVVGENENRETLEDQEVEV 196

[Close]
BLAST of Lag0009131 vs. NCBI nr
Match: XP_022953930.1 (LOB domain-containing protein 29-like [Cucurbita moschata])

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 1   MSGYGRIEHQFVEGYEGEGFVVGENENRESLE-EEVEI 38
           MSGYG +EHQFVEGY GEGFVVGENENRE+LE +EVE+
Sbjct: 159 MSGYGGLEHQFVEGYGGEGFVVGENENRETLEDQEVEV 196

The following BLAST results are available for this feature:
BLAST of Lag0009131 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038899918.17.9e-0788.24LOB domain-containing protein 22 [Benincasa hispida][more]
XP_011659803.27.9e-0784.21LOB domain-containing protein 22 [Cucumis sativus] >KGN45524.1 hypothetical prot... [more]
KAG7014013.11.3e-0681.58LOB domain-containing protein 22, partial [Cucurbita argyrosperma subsp. argyros... [more]
KAG6575472.11.3e-0681.58LOB domain-containing protein 22, partial [Cucurbita argyrosperma subsp. sororia... [more]
XP_022953930.11.3e-0681.58LOB domain-containing protein 29-like [Cucurbita moschata][more]
BLAST of Lag0009131 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0009131.1Lag0009131.1mRNA