Lag0009074 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0009074
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Locationchr9: 35033993 .. 35034336 (-)
RNA-Seq ExpressionLag0009074
SyntenyLag0009074
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAGCCGAGGTGCTTCTTGGACATCAGCATCGGCGGAGAGCTCGAAGGAAGAATCGTCGTCGAGCTTTACTACGACGTCGTTCCTAAAACCGCCGAGAATTTCAGGGCGCTTTGCACCGGCGAGAAAGGCATTGCTCCCAACACTGCCGTTCCGCTCCATTTCAAGGTCCTCACGCATGTCTTTTTTCTTTTCGTTTTTTGTTCGATTTCGTTCAAGTTGAAGCGTATTGTGTGATTCATTAGTGGAAGAGGTTTCTCAGAGATGAAGCAATGTCTTGTAGTTCTGGTGATTTGTTTTGGTTTGTGTTGCTTGGTCAAGCGTATGTTTCCGAGACTTGA

mRNA sequence

ATGGCCAAGCCGAGGTGCTTCTTGGACATCAGCATCGGCGGAGAGCTCGAAGGAAGAATCGTCGTCGAGCTTTACTACGACGTCGTTCCTAAAACCGCCGAGAATTTCAGGGCGCTTTGCACCGGCGAGAAAGGCATTGCTCCCAACACTGCCGTTCCGCTCCATTTCAAGTGGAAGAGGTTTCTCAGAGATGAAGCAATGTCTTGTAGTTCTGGTGATTTGTTTTGGTTTGTGTTGCTTGGTCAAGCGTATGTTTCCGAGACTTGA

Coding sequence (CDS)

ATGGCCAAGCCGAGGTGCTTCTTGGACATCAGCATCGGCGGAGAGCTCGAAGGAAGAATCGTCGTCGAGCTTTACTACGACGTCGTTCCTAAAACCGCCGAGAATTTCAGGGCGCTTTGCACCGGCGAGAAAGGCATTGCTCCCAACACTGCCGTTCCGCTCCATTTCAAGTGGAAGAGGTTTCTCAGAGATGAAGCAATGTCTTGTAGTTCTGGTGATTTGTTTTGGTTTGTGTTGCTTGGTCAAGCGTATGTTTCCGAGACTTGA

Protein sequence

MAKPRCFLDISIGGELEGRIVVELYYDVVPKTAENFRALCTGEKGIAPNTAVPLHFKWKRFLRDEAMSCSSGDLFWFVLLGQAYVSET
Homology
BLAST of Lag0009074 vs. NCBI nr
Match: XP_022148683.1 (peptidyl-prolyl cis-trans isomerase CYP40 [Momordica charantia] >XP_022148684.1 peptidyl-prolyl cis-trans isomerase CYP40 [Momordica charantia])

HSP 1 Score: 121.3 bits (303), Expect = 4.1e-24
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 0

Query: 1  MAKPRCFLDISIGGELEGRIVVELYYDVVPKTAENFRALCTGEKGIAPNTAVPLHFKWKR 60
          MAKPRCFLDISIGGELEGRI+++LYYDVVPKTAENFRALCTGE+GIAPNTAVPLHFK   
Sbjct: 1  MAKPRCFLDISIGGELEGRIIIDLYYDVVPKTAENFRALCTGERGIAPNTAVPLHFKGVC 60

Query: 61 FLR 64
          F R
Sbjct: 61 FHR 63

BLAST of Lag0009074 vs. NCBI nr
Match: KAG5528936.1 (hypothetical protein RHGRI_029556 [Rhododendron griersonianum])

HSP 1 Score: 119.8 bits (299), Expect = 1.2e-23
Identity = 55/63 (87.30%), Postives = 56/63 (88.89%), Query Frame = 0

Query: 1  MAKPRCFLDISIGGELEGRIVVELYYDVVPKTAENFRALCTGEKGIAPNTAVPLHFKWKR 60
          MAKPRCFLD+SIGGELEGRIVVELY DVVPKT ENFRALCTGEKGI PNT VPLHFK  R
Sbjct: 1  MAKPRCFLDVSIGGELEGRIVVELYNDVVPKTTENFRALCTGEKGIGPNTGVPLHFKGSR 60

Query: 61 FLR 64
          F R
Sbjct: 61 FHR 63

BLAST of Lag0009074 vs. NCBI nr
Match: PON49179.1 (Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Parasponia andersonii])

HSP 1 Score: 118.6 bits (296), Expect = 2.7e-23
Identity = 57/75 (76.00%), Postives = 61/75 (81.33%), Query Frame = 0

Query: 1  MAKPRCFLDISIGGELEGRIVVELYYDVVPKTAENFRALCTGEKGIAPNTAVPLHFKWKR 60
          M +PRCFLDISIGGELEGRIVVELY DVVPKTAENFRALCTGEKGI PNT VPLH+K  R
Sbjct: 1  MGRPRCFLDISIGGELEGRIVVELYDDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60

Query: 61 FLR-DEAMSCSSGDL 75
          F R  +     SGD+
Sbjct: 61 FHRVIKGFMVQSGDI 75

BLAST of Lag0009074 vs. NCBI nr
Match: KAF9854857.1 (hypothetical protein H0E87_006453 [Populus deltoides])

HSP 1 Score: 118.6 bits (296), Expect = 2.7e-23
Identity = 55/63 (87.30%), Postives = 57/63 (90.48%), Query Frame = 0

Query: 1  MAKPRCFLDISIGGELEGRIVVELYYDVVPKTAENFRALCTGEKGIAPNTAVPLHFKWKR 60
          MAKPRC+LDISIGGELEGRIVVELY DVVPKTAENFRALCTGEKGI PNT VPLH+K  R
Sbjct: 1  MAKPRCYLDISIGGELEGRIVVELYKDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGGR 60

Query: 61 FLR 64
          F R
Sbjct: 61 FHR 63

BLAST of Lag0009074 vs. NCBI nr
Match: XP_011007671.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like isoform X3 [Populus euphratica])

HSP 1 Score: 118.6 bits (296), Expect = 2.7e-23
Identity = 55/63 (87.30%), Postives = 57/63 (90.48%), Query Frame = 0

Query: 1  MAKPRCFLDISIGGELEGRIVVELYYDVVPKTAENFRALCTGEKGIAPNTAVPLHFKWKR 60
          MAKPRC+LDISIGGELEGRIVVELY DVVPKTAENFRALCTGEKGI PNT VPLH+K  R
Sbjct: 1  MAKPRCYLDISIGGELEGRIVVELYKDVVPKTAENFRALCTGEKGIGPNTGVPLHYKGVR 60

Query: 61 FLR 64
          F R
Sbjct: 61 FHR 63

BLAST of Lag0009074 vs. ExPASy Swiss-Prot
Match: Q9C566 (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana OX=3702 GN=CYP40 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-23
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0

Query: 1  MAKPRCFLDISIGGELEGRIVVELYYDVVPKTAENFRALCTGEKGIAPNTAVPLHFKWKR 60
          M + +CF+DISIGGELEGRIV+ELY DVVPKTAENFR LCTGEKG+ PNT VPLH+K  R
Sbjct: 1  MGRSKCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNR 60

Query: 61 FLR 64
          F R
Sbjct: 61 FHR 63

BLAST of Lag0009074 vs. ExPASy Swiss-Prot
Match: P26882 (Peptidyl-prolyl cis-trans isomerase D OS=Bos taurus OX=9913 GN=PPID PE=1 SV=6)

HSP 1 Score: 92.8 bits (229), Expect = 2.1e-18
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 2  AKPRCFLDISIGGELEGRIVVELYYDVVPKTAENFRALCTGEKGIAPNTAVPLHFKWKRF 61
          + PR F D+ IGGE  GRIV+EL+ D+VPKTAENFRALCTGEKGI P T  PLHFK   F
Sbjct: 14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF 73

Query: 62 LR 64
           R
Sbjct: 74 HR 75

BLAST of Lag0009074 vs. ExPASy Swiss-Prot
Match: Q6DGG0 (Peptidyl-prolyl cis-trans isomerase D OS=Rattus norvegicus OX=10116 GN=Ppid PE=1 SV=3)

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-17
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 4  PRCFLDISIGGELEGRIVVELYYDVVPKTAENFRALCTGEKGIAPNTAVPLHFKWKRFLR 63
          PR F D+ IGGE  GRIV+EL+ D+VPKTAENFRALCTGEKG  P T  PLHFK   F R
Sbjct: 16 PRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHR 75

BLAST of Lag0009074 vs. ExPASy Swiss-Prot
Match: Q08752 (Peptidyl-prolyl cis-trans isomerase D OS=Homo sapiens OX=9606 GN=PPID PE=1 SV=3)

HSP 1 Score: 89.4 bits (220), Expect = 2.3e-17
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 2  AKPRCFLDISIGGELEGRIVVELYYDVVPKTAENFRALCTGEKGIAPNTAVPLHFKWKRF 61
          + PR F D+ IGGE  GRIV+EL+ D+VPKTAENFRALCTGEKGI   T  PLHFK   F
Sbjct: 14 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPF 73

Query: 62 LR 64
           R
Sbjct: 74 HR 75

BLAST of Lag0009074 vs. ExPASy Swiss-Prot
Match: P52015 (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans OX=6239 GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 8.6e-17
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 0

Query: 1  MAKPRCFLDISIGGELEGRIVVELYYDVVPKTAENFRALCTGEKGIAPNTAVPLHFKWKR 60
          M++PR F DI+I G+  GRIV+ELY D+VPKTAENFRALCTGEKG+   +  PLHFK  +
Sbjct: 1  MSRPRVFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVG-KSGKPLHFKGSK 60

Query: 61 FLR 64
          F R
Sbjct: 61 FHR 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022148683.14.1e-2487.30peptidyl-prolyl cis-trans isomerase CYP40 [Momordica charantia] >XP_022148684.1 ... [more]
KAG5528936.11.2e-2387.30hypothetical protein RHGRI_029556 [Rhododendron griersonianum][more]
PON49179.12.7e-2376.00Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Parasponia andersonii][more]
KAF9854857.12.7e-2387.30hypothetical protein H0E87_006453 [Populus deltoides][more]
XP_011007671.12.7e-2387.30PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like isoform X3 [Populus eu... [more]
Match NameE-valueIdentityDescription
Q9C5662.1e-2376.19Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana OX=3702 GN=CYP... [more]
P268822.1e-1867.74Peptidyl-prolyl cis-trans isomerase D OS=Bos taurus OX=9913 GN=PPID PE=1 SV=6[more]
Q6DGG01.3e-1768.33Peptidyl-prolyl cis-trans isomerase D OS=Rattus norvegicus OX=10116 GN=Ppid PE=1... [more]
Q087522.3e-1766.13Peptidyl-prolyl cis-trans isomerase D OS=Homo sapiens OX=9606 GN=PPID PE=1 SV=3[more]
P520158.6e-1763.49Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans OX=6239 GN=cyn-7... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029000Cyclophilin-like domain superfamilyGENE3D2.40.100.10coord: 1..74
e-value: 1.6E-17
score: 65.8
IPR029000Cyclophilin-like domain superfamilySUPERFAMILY50891Cyclophilin-likecoord: 2..63
IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainPFAMPF00160Pro_isomerasecoord: 8..56
e-value: 1.3E-6
score: 28.7
IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainPROSITEPS50072CSA_PPIASE_2coord: 7..88
score: 10.797836
NoneNo IPR availablePANTHERPTHR11071:SF483PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40coord: 1..63
NoneNo IPR availablePANTHERPTHR11071PEPTIDYL-PROLYL CIS-TRANS ISOMERASEcoord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0009074.1Lag0009074.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
biological_process GO:0000413 protein peptidyl-prolyl isomerization
cellular_component GO:0016020 membrane
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity