Lag0009033 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0009033
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr9: 34316401 .. 34316883 (-)
RNA-Seq ExpressionLag0009033
SyntenyLag0009033
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGTATCTCAACTGCATCATTCTCTATCCTGATTAATGGGGAGGTGGTTGGTATTATCAAGCCTTCCCGAGGACTGCGACAAGGGGACTTCTTGTCTCCATATATGTTTTTATTATGCACGGAAGGCCTCTCAGCTATGCTAGCTTATGCCTGCTCCCATTCGCTAACCGGGGTAGCTATTTCGAGATCCTGCCCAAGCATTACTCATTTATTCTTCGCAGACGATAGTTTGATATTCCTTAGAGCTACTATGGAGGAGTTTGAGATTTTTCAGAATATTATGGAAAACTATGAGAAAGCTTCTAGTCAGTGTATCAATCTTAATAAATCAATGGTATATTTCTCTAAAAACATGGTCGTGGATACGAGAGATCACCTCAGTAACATGCTGGGTATGAGAATGATTGATTCCTTTGGTCCTTACCTTGGATTGCCTTCAACTTTCCACAGGGGCAAAAGCAAAGACTTCCAGTTTTAA

mRNA sequence

ATGGATTGTATCTCAACTGCATCATTCTCTATCCTGATTAATGGGGAGGTGGTTGGTATTATCAAGCCTTCCCGAGGACTGCGACAAGGGGACTTCTTGTCTCCATATATGTTTTTATTATGCACGGAAGGCCTCTCAGCTATGCTAGCTTATGCCTGCTCCCATTCGCTAACCGGGGTAGCTATTTCGAGATCCTGCCCAAGCATTACTCATTTATTCTTCGCAGACGATAGTTTGATATTCCTTAGAGCTACTATGGAGGAGTTTGAGATTTTTCAGAATATTATGGAAAACTATGAGAAAGCTTCTAGTCAGTGTATCAATCTTAATAAATCAATGGTATATTTCTCTAAAAACATGGTCGTGGATACGAGAGATCACCTCAGTAACATGCTGGGTATGAGAATGATTGATTCCTTTGGTCCTTACCTTGGATTGCCTTCAACTTTCCACAGGGGCAAAAGCAAAGACTTCCAGTTTTAA

Coding sequence (CDS)

ATGGATTGTATCTCAACTGCATCATTCTCTATCCTGATTAATGGGGAGGTGGTTGGTATTATCAAGCCTTCCCGAGGACTGCGACAAGGGGACTTCTTGTCTCCATATATGTTTTTATTATGCACGGAAGGCCTCTCAGCTATGCTAGCTTATGCCTGCTCCCATTCGCTAACCGGGGTAGCTATTTCGAGATCCTGCCCAAGCATTACTCATTTATTCTTCGCAGACGATAGTTTGATATTCCTTAGAGCTACTATGGAGGAGTTTGAGATTTTTCAGAATATTATGGAAAACTATGAGAAAGCTTCTAGTCAGTGTATCAATCTTAATAAATCAATGGTATATTTCTCTAAAAACATGGTCGTGGATACGAGAGATCACCTCAGTAACATGCTGGGTATGAGAATGATTGATTCCTTTGGTCCTTACCTTGGATTGCCTTCAACTTTCCACAGGGGCAAAAGCAAAGACTTCCAGTTTTAA

Protein sequence

MDCISTASFSILINGEVVGIIKPSRGLRQGDFLSPYMFLLCTEGLSAMLAYACSHSLTGVAISRSCPSITHLFFADDSLIFLRATMEEFEIFQNIMENYEKASSQCINLNKSMVYFSKNMVVDTRDHLSNMLGMRMIDSFGPYLGLPSTFHRGKSKDFQF
Homology
BLAST of Lag0009033 vs. NCBI nr
Match: XP_023878301.1 (uncharacterized protein LOC111990748 [Quercus suber])

HSP 1 Score: 161.0 bits (406), Expect = 8.5e-36
Identity = 83/159 (52.20%), Postives = 109/159 (68.55%), Query Frame = 0

Query: 1   MDCISTASFSILINGEVVGIIKPSRGLRQGDFLSPYMFLLCTEGLSAMLAYACSHSL-TG 60
           M CI++ S+SILING   G I PSRGLRQGD LSP +FLLC EGLSA++  A  + L TG
Sbjct: 571 MQCITSVSYSILINGVAHGNIYPSRGLRQGDPLSPSLFLLCAEGLSALINQAARNKLITG 630

Query: 61  VAISRSCPSITHLFFADDSLIFLRATMEEFEIFQNIMENYEKASSQCINLNKSMVYFSKN 120
           ++I+R CP +THLFFADDS++F +A  EE  + ++I+  YE+AS Q IN +KS ++FS N
Sbjct: 631 ISINRGCPKVTHLFFADDSILFCKAAYEECHLLRSILGQYEEASGQKINTDKSSIFFSPN 690

Query: 121 MVVDTRDHLSNMLGMRMIDSFGPYLGLPSTFHRGKSKDF 159
              +TRD + N+LG         YLGLPS   R KS+ F
Sbjct: 691 TAQETRDEIFNILGPMQNSRHTKYLGLPSLIGRSKSQVF 729

BLAST of Lag0009033 vs. NCBI nr
Match: XP_023892052.1 (uncharacterized protein LOC112004058 [Quercus suber])

HSP 1 Score: 159.5 bits (402), Expect = 2.5e-35
Identity = 78/161 (48.45%), Postives = 107/161 (66.46%), Query Frame = 0

Query: 1   MDCISTASFSILINGEVVGIIKPSRGLRQGDFLSPYMFLLCTEGLSAMLAYACSHS-LTG 60
           M C+++ SFSI I+G+  G I+PSRGLRQGD LSPY+FLLC EG S+MLA A     L G
Sbjct: 207 MSCVTSTSFSIRIDGKAYGNIQPSRGLRQGDPLSPYLFLLCAEGFSSMLAKAQEEERLHG 266

Query: 61  VAISRSCPSITHLFFADDSLIFLRATMEEFEIFQNIMENYEKASSQCINLNKSMVYFSKN 120
           V I R  PSI+HL FADDSL+F +A+ EE ++   +++ Y  +S QCIN  KS VYFS N
Sbjct: 267 VVICRRAPSISHLLFADDSLLFCKASQEEVQVISEVLQTYAASSGQCINFEKSSVYFSSN 326

Query: 121 MVVDTRDHLSNMLGMRMIDSFGPYLGLPSTFHRGKSKDFQF 161
             ++ R+ +   +G+R ++ F  YL LP+   R K + F +
Sbjct: 327 TAIEDRERIKEKMGVREVERFESYLKLPTLVGRAKYQTFSY 367

BLAST of Lag0009033 vs. NCBI nr
Match: XP_023915663.1 (uncharacterized protein LOC112027222 [Quercus suber])

HSP 1 Score: 157.9 bits (398), Expect = 7.2e-35
Identity = 82/161 (50.93%), Postives = 104/161 (64.60%), Query Frame = 0

Query: 1   MDCISTASFSILINGEVVGIIKPSRGLRQGDFLSPYMFLLCTEGLSAMLA-YACSHSLTG 60
           M C+ST SF++ ING+  G IKP+RG+RQGD  SPY+FLLC EG +A+LA       L G
Sbjct: 129 MSCVSTPSFTVRINGKAYGNIKPTRGIRQGDPFSPYLFLLCAEGFTALLAKEEVEGRLHG 188

Query: 61  VAISRSCPSITHLFFADDSLIFLRATMEEFEIFQNIMENYEKASSQCINLNKSMVYFSKN 120
           V+I R  P I+HL FADDSL+F RATMEE     + ++ Y  AS QCIN  KS VYFS N
Sbjct: 189 VSIGRRAPMISHLLFADDSLLFCRATMEEVRCISDTLQLYVVASGQCINFEKSSVYFSSN 248

Query: 121 MVVDTRDHLSNMLGMRMIDSFGPYLGLPSTFHRGKSKDFQF 161
                R+ + N LG++ +D F  YLGLP+   R K + F F
Sbjct: 249 TQGVQREAIKNELGVKEVDRFESYLGLPTLVGRAKYRTFSF 289

BLAST of Lag0009033 vs. NCBI nr
Match: XP_030939512.1 (uncharacterized protein LOC115964316 [Quercus lobata])

HSP 1 Score: 157.5 bits (397), Expect = 9.4e-35
Identity = 84/159 (52.83%), Postives = 106/159 (66.67%), Query Frame = 0

Query: 1   MDCISTASFSILINGEVVGIIKPSRGLRQGDFLSPYMFLLCTEGLSAMLAYACS-HSLTG 60
           M C++T SFS+L+NG   G + PSRG+RQGD LSPY+FLLCTEG +++L  A S  SL G
Sbjct: 416 MSCVTTTSFSVLVNGRPFGNVLPSRGIRQGDPLSPYLFLLCTEGFTSLLDRAESGGSLHG 475

Query: 61  VAISRSCPSITHLFFADDSLIFLRATMEEFEIFQNIMENYEKASSQCINLNKSMVYFSKN 120
           V+I RS P IT+L FADDSLIF RAT  EF    +I++ Y KAS QCINL KS VYFS N
Sbjct: 476 VSICRSAPKITNLLFADDSLIFGRATPAEFNAIVDILQVYAKASGQCINLEKSSVYFSNN 535

Query: 121 MVVDTRDHLSNMLGMRMIDSFGPYLGLPSTFHRGKSKDF 159
             V  +     +LG++ +  F  YLGLP+   + K   F
Sbjct: 536 TTVSQKQEALGILGVKEVVRFESYLGLPTLVGKAKYHTF 574

BLAST of Lag0009033 vs. NCBI nr
Match: XP_023913142.1 (uncharacterized protein LOC112024740 [Quercus suber])

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-34
Identity = 82/161 (50.93%), Postives = 102/161 (63.35%), Query Frame = 0

Query: 1   MDCISTASFSILINGEVVGIIKPSRGLRQGDFLSPYMFLLCTEGLSAMLAYACSHS-LTG 60
           M C+ST SFS+ ING   G I PSRGLRQGD LSPY+FLLC EG +++L+ A S   L G
Sbjct: 459 MSCVSTPSFSVHINGRAFGNITPSRGLRQGDPLSPYLFLLCAEGFTSLLSKAESEGRLHG 518

Query: 61  VAISRSCPSITHLFFADDSLIFLRATMEEFEIFQNIMENYEKASSQCINLNKSMVYFSKN 120
           V I R  P I++L FADDSLIF RA  EE ++  N ++ Y +AS QCIN  KS  YFS N
Sbjct: 519 VQICRRAPCISNLLFADDSLIFCRANQEEVQVITNTLKLYAEASGQCINFEKSSAYFSSN 578

Query: 121 MVVDTRDHLSNMLGMRMIDSFGPYLGLPSTFHRGKSKDFQF 161
                R  +   LG+R +D F  YLGLP+   R K + F +
Sbjct: 579 TSEGQRQQIKQALGVREVDRFDSYLGLPTLIGRSKYQTFAY 619

BLAST of Lag0009033 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.2e-12
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 0

Query: 12 LINGEVVGIIKPSRGLRQGDFLSPYMFLLCTEGLSAMLAYACSHS-LTGVAISRSCPSIT 71
          +ING   G++ PSRGLRQGD LSPY+F+LCTE LS +   A     L G+ +S + P I 
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72

Query: 72 HLFFADDS 79
          HL FADD+
Sbjct: 73 HLLFADDT 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023878301.18.5e-3652.20uncharacterized protein LOC111990748 [Quercus suber][more]
XP_023892052.12.5e-3548.45uncharacterized protein LOC112004058 [Quercus suber][more]
XP_023915663.17.2e-3550.93uncharacterized protein LOC112027222 [Quercus suber][more]
XP_030939512.19.4e-3552.83uncharacterized protein LOC115964316 [Quercus lobata][more]
XP_023913142.12.1e-3450.93uncharacterized protein LOC112024740 [Quercus suber][more]
Match NameE-valueIdentityDescription
P925555.2e-1252.94Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 ... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 2..118
e-value: 1.0E-14
score: 54.6
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..136
score: 9.060108
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 1..159
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 1..159
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 11..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0009033.1Lag0009033.1mRNA