Lag0009008 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0009008
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ethylene-responsive transcription factor-like protein
Location	chr9: 33852173 .. 33854208 (+)
RNA-Seq Expression	Lag0009008
Synteny	Lag0009008

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGCTTAAGAAGGCGCAGGCTCTTGGGATTATGCTTTGGTACGTTTACATATTCTTGTGAGATAAATGGTTGTTTGTCGAATAAGCAATCATCACGGTTTTTGTGGAGAGTTTGTATTTTCTTTCTTTCTGAGCTCACTAGGTTCTTGTTCCATTTGTTTAAAATTGTTTGTTGAAATTTCCTGGGACATTTCAGAGAAAAGTTCATTTGTAGCTCCACTTCCTAAGTTTTCAGAAAATGGAACCGCCCTTGAAAATCCTAGTCTGAGTAACAAACTTGTCACCGTGCATCCCATGTCTTCTGATGATGTTAATATCACAGATAGGGTAAGATGACAAGTTCAAAATATTTTCTGACTGTTTTCCTCGTACACATGACCGTGATAACATTTATATCAAGTTATTTTCATAAGCAAATTGATCTTGTTTTTAGGTTTCTACTTGGTTCTCCCAATTTCATTACCCAATATTGATATTGGAAGTGATATTTACATCTAGATAACTTCATTGGTTAAGCTTCCTAGTTTTTGTTGATAAAAGTCAGTGAAATATTTTCTGCATTTCATTTTTACATGTTACTTAAAATAGTGGTTCTGGAATTTTATTACATACTTGATACCATACGGAGATATATGATTGCTCCACCTTTTCCTTTTTAAATGCTTTTTTTGTTCTGAAACGTAGGCTAAAAGTATTCTAAAAACCATATATTGGGTTGTATACGTTTGTTTTTATTTTTAAGCTTTATCTTGGATAATATTTTCGACCTTTTAAATATAGAAAGTCATGTAAGCCTTGACTGAATAAAAGGGAAATAATGTTTGTTTATATATTCATAGTATTTTCTCTGAGTCTGAAAAGTCCCGTGAAGATATATCGGGCTATCGAACTTGATCCCATAATTAAGGACTGATGGATTAAACTTTAGTAATTGATAAAAGTTGATGTTTCCATTTTCTATTTGCTTTGGTTCACTTTTTTTTTTCCTGAAAAGATAAAATACACATTTTAGGGACACGGTTCAAGTAAAGGGAAAAAAAACCATTTTTTGTTTGTTTGTTTTTTAAGATTTCGTTCATGTGACTGACTTGTTGGGAAAAAACCCTCCAATTCTAGCACAGGAATAAGCAGAAAAATAGTAGAGAAATTAAAATAAACAAAATAAGAAACACAAGAATTTACATGGAAACTCCAAAGCGAGCTCACAGAAAGAAATCCACTATGCGAAAAATTGTTACAATCACAAAGAATTCTCTCCCCCGACCCCAATTACAAGAACACACACTCTCAAAGCTTTATACCACTCACACTACTAGAGTATAGACTCCTTTTATAGTACTTGAAGCCCATCACTTTCTTGAACCTTTCCGATGTGGGACAAACTCCCTTCTAATATTTTGCCAAAACCAAACAAATTCCACATTGGCAAGATATTTGAAGAATCCACAACTCTAGCTACGAACCATTGTCTTCACCGACAATCATAATTCTCATCTCAGAGAACTATAACTACCCCACCATACAGAATAGACCACTTGGAATATCACTTTCCAAGAATTTTCTTTGTCACATGTCGATAAATCTTGCTGAAATTTATGGTGCAACTTCCACCTACTTGGCTCACCTGGAAGTTCTTCACCTGGAAGTTCTTCAGTCATCGACATAACTTCTACCACACACTTGCATAACGCCCAAGTCAATGCCCGTGTGAATTCTTTTTCATGTGTCCAGACTGTCCGCATTCCAACCTTTCTTCTGCATGGACTCTTTCTTCTTCTTCCAATTGCTAGCTACTAGTGTTGAATCCTCCTGTGAAATACGCCCTCACTCTTCAGCTTTTCTTCTGATAAGAGTTTACTAGTAACATCAGCAAAATTTAAAGTTTCCTTCCCGTACATCAAATTGGCTTCATGTGTTCATAAAAAGTTGGAAGCGACAAGATAAGCCTGAGTGCCTTATCCTCATCCTCTATCTTAACTTCGATCACCTCCAGCTCCGAAATGATGCCATTGAGGACACTCAGATGATCTGA

mRNA sequence

ATGGTGAGCTTAAGAAGGCGCAGGCTCTTGGGATTATGCTTTGAGAAAAGTTCATTTGTAGCTCCACTTCCTAAGTTTTCAGAAAATGGAACCGCCCTTGAAAATCCTAGTCTGAGTAACAAACTTGTCACCGTGCATCCCATGTCTTCTGATGATGTTAATATCACAGATAGGCAAAATTTAAAGTTTCCTTCCCGTACATCAAATTGGCTTCATGTGTTCATAAAAAGTTGGAAGCGACAAGATAAGCCTGAGTGCCTTATCCTCATCCTCTATCTTAACTTCGATCACCTCCAGCTCCGAAATGATGCCATTGAGGACACTCAGATGATCTGA

Coding sequence (CDS)

ATGGTGAGCTTAAGAAGGCGCAGGCTCTTGGGATTATGCTTTGAGAAAAGTTCATTTGTAGCTCCACTTCCTAAGTTTTCAGAAAATGGAACCGCCCTTGAAAATCCTAGTCTGAGTAACAAACTTGTCACCGTGCATCCCATGTCTTCTGATGATGTTAATATCACAGATAGGCAAAATTTAAAGTTTCCTTCCCGTACATCAAATTGGCTTCATGTGTTCATAAAAAGTTGGAAGCGACAAGATAAGCCTGAGTGCCTTATCCTCATCCTCTATCTTAACTTCGATCACCTCCAGCTCCGAAATGATGCCATTGAGGACACTCAGATGATCTGA

Protein sequence

MVSLRRRRLLGLCFEKSSFVAPLPKFSENGTALENPSLSNKLVTVHPMSSDDVNITDRQNLKFPSRTSNWLHVFIKSWKRQDKPECLILILYLNFDHLQLRNDAIEDTQMI

Homology

[Close]

BLAST of Lag0009008 vs. NCBI nr
Match: XP_022159022.1 (ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Momordica charantia])

HSP 1 Score: 104.8 bits (260), Expect = 5.0e-19
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MVSLRRRRLLGLCFEKSSFVAPLPKFSENGTALENPSLSNKLVTVHPMSSDDVNITDRQN 60
          MVSLRRRRLLGLC  KSSFVAPLPKFS+NGTA ENPS SNKLVTVHPMSSDDVN+TDR +
Sbjct: 1  MVSLRRRRLLGLCSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSS 60

Query: 61 L 62
          +
Sbjct: 61 V 61

[Close]

BLAST of Lag0009008 vs. NCBI nr
Match: XP_038899853.1 (ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Benincasa hispida] >XP_038899854.1 ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Benincasa hispida] >XP_038899855.1 ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Benincasa hispida])

HSP 1 Score: 100.9 bits (250), Expect = 7.3e-18
Identity = 50/62 (80.65%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 1  MVSLRRRRLLGLCFEKSSFVAPLPKFSENGTALENPSLSNKLVTVHPMSSDDVNITDRQN 60
          MVSLRRRRLLGLC  KSSFV PLPKFSENGT  ENPS SNKLVT+HP SSDDVNITDR +
Sbjct: 1  MVSLRRRRLLGLCSGKSSFVTPLPKFSENGTTPENPSPSNKLVTLHPKSSDDVNITDRSS 60

Query: 61 LK 63
          ++
Sbjct: 61 IE 62

[Close]

BLAST of Lag0009008 vs. NCBI nr
Match: XP_022159021.1 (ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Momordica charantia])

HSP 1 Score: 100.5 bits (249), Expect = 9.5e-18
Identity = 53/68 (77.94%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MVSLRRRRLLGLCFE-------KSSFVAPLPKFSENGTALENPSLSNKLVTVHPMSSDDV 60
          MVSLRRRRLLGLC E       KSSFVAPLPKFS+NGTA ENPS SNKLVTVHPMSSDDV
Sbjct: 1  MVSLRRRRLLGLCSELFWDFSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDV 60

Query: 61 NITDRQNL 62
          N+TDR ++
Sbjct: 61 NLTDRSSV 68

[Close]

BLAST of Lag0009008 vs. NCBI nr
Match: XP_038899850.1 (ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Benincasa hispida] >XP_038899851.1 ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Benincasa hispida] >XP_038899852.1 ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-16
Identity = 50/65 (76.92%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 1  MVSLRRRRLLGLCFE---KSSFVAPLPKFSENGTALENPSLSNKLVTVHPMSSDDVNITD 60
          MVSLRRRRLLGLC +   KSSFV PLPKFSENGT  ENPS SNKLVT+HP SSDDVNITD
Sbjct: 1  MVSLRRRRLLGLCSDISGKSSFVTPLPKFSENGTTPENPSPSNKLVTLHPKSSDDVNITD 60

Query: 61 RQNLK 63
          R +++
Sbjct: 61 RSSIE 65

[Close]

BLAST of Lag0009008 vs. NCBI nr
Match: XP_008458053.1 (PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 5.2e-16
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1  MVSLRRRRLLGLCFEKSSFVAPLPKFSENGTALENPSLSNKLVTVHPMSSDDVNITDRQN 60
          MVSLRRRRLLGLC  KSSFVAPLPKFS++ TA ENPS SNKL+T+HP SSDDVNI DR +
Sbjct: 1  MVSLRRRRLLGLCSGKSSFVAPLPKFSDHETAPENPSPSNKLITLHPKSSDDVNIKDRSS 60

Query: 61 L 62
          +
Sbjct: 61 I 61

The following BLAST results are available for this feature:

BLAST of Lag0009008 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159022.1	5.0e-19	85.25	ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Momo...	[more]
XP_038899853.1	7.3e-18	80.65	ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Beni...	[more]
XP_022159021.1	9.5e-18	77.94	ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Momo...	[more]
XP_038899850.1	1.0e-16	76.92	ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Beni...	[more]
XP_008458053.1	5.2e-16	77.05	PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 [Cucu...	[more]

BLAST of Lag0009008 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32467:SF4	OS02G0499000 PROTEIN	coord: 1..64
None	No IPR available	PANTHER	PTHR32467	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0009008.1	Lag0009008.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0050896	response to stimulus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0005094	Rho GDP-dissociation inhibitor activity