Lag0008972 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0008972
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr9: 33186520 .. 33191611 (-)
RNA-Seq ExpressionLag0008972
SyntenyLag0008972
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGAGAAACAAAGATCTAAACGCAGAACATTCGAACGGTGAGCACCACCCGCAGGGGTCACGAGAAGAAAGTCGAGGTCAGCCTCGGACCCAATCTCGTCGGCCTTTATCCCGAGAGAGACAGACTGATGTCAAAATTGCTACCCTCGAGGATAAAGTAAGTGTGATGGATCATAATTTGTCTAGGATACTTCTTATCTTGAATGAATCTGGTCCTAGCACTAAAATCCATGATGAGAGATTGATTAGGGATTCAAGGAAGAGGAAGGAACCAATGGAGTACACTATAGAGTCAAAAACAAGATCGAAGGGAAAGAAGACTAACAACTTGACCAGCAAGGTCAGGGGGCTAAAGTCTACAAATCGCACAGTGTTGAAAAGCCTAGAACCAAGCACGTACAAACTACATGACCACACCGTTTCGACATCAAGTATCAACCGCACAACAGGAGCAGACCTACAGACCTGATCAAGGAAAAACGCAGAATGGCCAAGGCTACCGAGGCTAGAGCAGTCGAGGTCGAGGGCAAGAATGGTAACCCCCCTTGGAAGACTGAACTTCCGAACACACTGATGGAGATCGGGAATTTCCAATGGAACCTGCACAAATCAAAAGGTTTGGAGGAACAAAACTTGGAAACCCTGATCAACCAGGTTGATCTGCCCTTCACTGATGAAGTTATGAAAGCCGAGGTGCCCCAGAAGTTCAAGGTACCTACATTCAAGCCGTATGATAGCAAGAAGAACCTCGTACAACACTTAGACGTCTACAGGACATGGATGGGTTTTCACGGCGTTTCAGATGCAATCAGGTGTCATGTTTTTTCTTTCACTTTAACAGGGTCAACCAAGCAATGATTTCAAAGGTTGCAAATGAGGTCCATCAGATCTTTCAAAGAATTAGCCCGAGAATTCATCTCGTAGTTCATGAGAGCCAAAAAACAGTGCATGCCTCACATCAACCTCCTAACTGTCAAACAACAGCCAGGTGAGAGTTTGTGTGATTATATAACATGTTTCAACGAAGAAGCACTACAGGTTGAGGGATACAACCCTAGTAGCCATAATAGTAGGACTGGAGGACGAGAGGTTACTTAATTTCATAGGCAAGAGCCGACCTCCGACTACCGGTCGCCACCGTCAACCTTCGACTACCTGCCACCACCGTCGACCTCCGACTACCGATCTCTACCGATCAGCCGCCACCCGCAACCTCTGACTATAATTTTTATATTATATGTACCAAAATTTATTTCAACTAAAAATCAAGAAACGAGAAACAGTTATCAAACACATATTTGTTTCTGTTTCTTTTTTTAGAGAAATAGTAAATAGAAATAGAAACATGTTTTTGTTTTTAGTTATTAAAAAACAAAAAACAAGAAACGGGAAACAAGAACGTTATCAAAACGAGCCCTTAGCGTCTCGACGCTGCTGCAAACAACTTCCCCAGTCGAAGACTTGAAGGCACAATGTCGAGATGTTGTGTCGTCAGCGTTGAGACGTTGGCCCATTTTTCATTTGTTATACGTGCGACAATTGTCCCTAGCGTCTCGATGCTGCCCAGATTTTTCCTATATATAGAAAGCGATTTTGGCTGGCCAAGAGAACTTCTTTTGGAGAGATTTTAGCCCTAATTTCAACTAGAGACCTCTTGTGGGAGATTGAGCAAGGGCAAAAAGCGGGATTCAAGACGATAGCTCGTGGAGATCGTGACGGGATGGTGCGACATCGACGAGATAGAGTTTTTCTCCTTTCTTTCCTTGTCTTTAGTTTTTGTTATGGATTTATCTTCTAGCTTATATTGTAACGAGGTGGATATGAGTAGCTAGACCTTATTTCTTAGGGATTGATGTAGCCCTTTGGACATTGTTGGATTAATTCTTGGATGTATGTTGCTTTGAATTCATTTATGCATATTATTCTCTTAATGTTTTTAATTCACTGGCCATGAATTGAATGATGCTTTCTCTAAGTCTTGTTTGGGAGAGGGGATTTAGTTTAGAACTTGTTTTGCATAATTAGAGTAGTCTTAAGATCGGGAGATTTAGGATAGTTTTAGAAATCACAAAAAGGATTAGACTTAAAACCTTTGTAACGTCGGCATTCTTAAGGTGACTCTGTAATTATGAGTTTTACCGTTCTTGTTAATTGAGGATAGAGAGATTTAAATTTTTTCTTTTGTATAGATCTTGGGGGGAAATTTTGTAATTAAATGGAGTTGGTAGCCAAGCCCTAACCCCGATTCAACAGCCTCCACTTCCCTTTTTTTCTTCACGTGTTTGCTGCAACCATTTTCCTTCCCTTGCGTTTTCTTCTTCTTCCTCCTCATCGTAAGACTCAATTCCCAGCCGCCCCTCTCCTTTCTTTTTTTCTTTTACTTCTTCGTCCTGCCGGTCAGTTCCCCCCTGTTGTTCCAGCGTCAGCGTCAGGCGTCCCAGTGAAGCTTGTGACCGGCGGCGAGTCTCCGGTAGCTGTGGGTCGGCGACAAAGAAGGGTTTCGGCCAACAGGTGAAGTTTTTCTCCTCTTCTTTAGGCGTTTTTCTCGCAAATTTTCCCTCTCGCCCGATCTCCCACTCCCGGTCACTCTCTCATCTGTTTTTGCGTGTTCTTCAAGCAGCAGTATCGTTAGGCGCATCAGAACTGTTTGGGGGCGTTTTAGGCGTTGTTCCGGCGTTTCGTTTAGTGGGTAAGTGCCTAGAAGCTTTTTCATGGTTTGTTTTTTAGTTTAGTTGATTACCCACTCTTCGTTCTTTCCGTTCAGCAAACGTTCTTTTCGTATCCGATGATTTGAGTGTTGGATCTCCAAGTTTCAGCATCCTTGAGCGGGTTCCGTCCTTGGGTACGTGATTTAAGTTGAGTTTTTTATGGTTTATCTTTGTTGGTGGATTACCCATTGATATTAGCACTTGTTTTCTAGGTCTCCTTAGCGTTTGGTGATTTATTGTCGATTTTAGGTGGTAATTGGAACCCGGACTGCAAGCACGATTTTCTGTTTGGGTAAGTTTTGGGAGTTTAATTTGTTCCCAAAATTAAGTGGCTTCTAGTTTTATGTTTGGATTAGTCTCCTATTAATCGTGTATGTTTTCCTCCCTTATGATGTAGTTAATTAAGGGTCTTGGAGCTAGGAGGTTCTATAGTTAATCTCACAAGCTTTTTAGCTAAGGTAAGTAGCTTTTGGACATGATATAGTTGCTTTTGGAACGTTGTATGCTTAATGGTAGTGAAATGAAGTCTTGGATGAGTTTTCGTGCTTTGGTCTAATTTTTCCCTTGAAATGTTGTATACTTGCTTGAACATGATTTAAGTGTGGTTGTTCGACATGACTTAGGTGTTGTTTATGCATATAGAATTAAATAAGTGTGGTATGTTGTGATGAGTCGTGAGGCATGATAACGATATGAGGATTTTTTTTGTTTTCTGTGGCGTCTTCTGATTCGCTACTAAGCATGTTTGGGATGTTTGATTCATGACTGTTTCTGGATTGTGTTTATGTTATTGGAGGATGGGCTAAATGTTTCTGGAGTTGTGATTGAAGTAGATGTGAGATCTGGCTTGTTGTGTCTATAGAAGTGCAACATTCTTGTTTCCAGGTGCAAGGAAAAATTTTGGGATTCTTATATGTATGTCGTTATGTTGCTGAATTTTCGGTAGCACCATAGTGGTTTAGGGATCATAATTGTCCTCGAGGAAAGGCTTAGAATAGGGACCTAAACCACGTTTTAGGGCCTTGGGTAGACTTACTAAGTCTTACATAGCTAGAGTGTGTTCCTTCCCCATCTCAGGGCTGATAGAAAATAGTTGTCAGGCACGGTTGCGTGTGTTCTATCAGTTGACTGTTAGAGCTTAGTTTCAGGCACGCTAGTGTGCGCTCTCTCAGTTCAGGAAGATGTTTAGTTATGATCAGGCAAATTATTTGTGCGCCAGTTGACACCATACATGTTTACATGCATCAGTTACTCCATCGTATTTTATGTTTACGTTCAGGGGTGTTGTGTTGGGATAGGTGTAGCTCTGCTAGAGGTGGCCAACTAGTCTCTAATTTACTCGCCTTATACGATTGACCCACACAACACTCTAGTTGGCACAGGTTGGGGATAGGTTATCACCCTAGACAGAGCATGTCTATGTGATCAGTTGTGGCCCTAGGGTTAGAAACTCGAATGTTTATTCCAATTAGGTCCCCATGTCGCTAAGCCTCAGAAGTTCAAAAATTCAATTTCAAGTTTCTAGATCTCATGTTATCAGTTTCAGCTCTTAGGTGGGCTACTTACTAAGTATATTCTTATATACTCACCCATGCTACATGTCTTTCCTTTTAGGTGGTACTTAGAGCATTGGCGATTGGTGAGGATCGTGGCTTGACTGGCTATGGGAATGTGCTACGAATTTTGTCATTTTCCTTAGGAATTCGTTTCTTCCATTCTAGGATCAGTTTTATGTTGAGCCTTCATTTTTAAACGATTGTTTTACATTTGGGATTTATTCAGATGTTTTTATTTCGTTATTTAAGTGAGGAACTTATTCATGTTTTGGGCCCTATTTGAATTAAATGAAAAACATTGTTATTTTTCCGCTTTAAAGTTTCCAAAGTTTTTCGTACTCATGCTTGTAGTAGCGATCCCTTTGTATGTTTCTATCCCTTTTTAGTCGGGTCGTTACAGTTGGTATCAGAGCCCAGTTTCTAGGTTCTGTAGACTCGCTTACATCGTAAGCATCAGATTTCCCCATAGCCAAGTACAAGTAAGCACGCCTCGCCATCGCCAGGTACGTTACAGTCAGTACAAAGTAGGAAAGAGTGTTATGAATGATGATCTATATTATGCGTGAAACTTGAATCTTTATAATCTTGCTATCTGGGTAGCGTGAGTTGGTTCTCGTTATTCTTGGCATGGGGGATTTAGCTTGACCCCCTTTTAATGTCTTTTGAATGCTAGACTATGCCTCCACGTATTCGAGGTCGAGGATGGGGTCGTGGACGTGGTAGGGGTCATGTGTCCCTAGAGCAAGTAGATCCTCCAGTAATTCATCAAGTTGTTAATGAGCCCGAGATTCAGATGCCTGCATCGCTTGCACCCCGACGTTAG

mRNA sequence

ATGGAGAAGAGAAACAAAGATCTAAACGCAGAACATTCGAACGGTGAGCACCACCCGCAGGGGTCACGAGAAGAAAGTCGAGGTCAGCCTCGGACCCAATCTCGTCGGCCTTTATCCCGAGAGAGACAGACTGATGTCAAAATTGCTACCCTCGAGGATAAAGTAAGTGTGATGGATCATAATTTGTCTAGGATACTTCTTATCTTGAATGAATCTGGTCCTAGCACTAAAATCCATGATGAGAGATTGATTAGGGATTCAAGGAAGAGGAAGGAACCAATGGAGTACACTATAGAGTCAAAAACAAGATCGAAGGGAAAGAAGACTAACAACTTGACCAGCAAGTATCAACCGCACAACAGGAGCAGACCTACAGACCTGATCAAGGAAAAACGCAGAATGGCCAAGGCTACCGAGGCTAGAGCAGTCGAGGTCGAGGGCAAGAATGGTAACCCCCCTTGGAAGACTGAACTTCCGAACACACTGATGGAGATCGGGAATTTCCAATGGAACCTGCACAAATCAAAAGGTTTGGAGGAACAAAACTTGGAAACCCTGATCAACCAGGTTGATCTGCCCTTCACTGATGAAGTTATGAAAGCCGAGGTGCCCCAGAAGTTCAAGGTACCTACATTCAAGCCGTATGATAGCAAGAAGAACCTCGTACAACACTTAGACGTCTACAGGACATGGATGGGTTTTCACGGCGTTTCAGATGCAATCAGCGTCAGCGTCAGGCGTCCCAGTGAAGCTTGTGACCGGCGGCGAGTCTCCGGTAGCTGTGGGTCGGCGACAAAGAAGGGTTTCGGCCAACAGGTGAAGTTTTTCTCCTCTTCTTTAGGCGTTTTTCTCGCAAATTTTCCCTCTCGCCCGATCTCCCACTCCCGGTCACTCTCTCATCTGTTTTTGCGTGTTCTTCAAGCAGCAGTATCGTTAGGCGCATCAGAACTGTTTGGGGGCGTTTTAGGCGTTGTTCCGGCGTTTCGTTTAGTGGCAAACGTTCTTTTCGTATCCGATGATTTGAGTGTTGGATCTCCAAGTTTCAGCATCCTTGAGCGGGTTCCGTCCTTGGGTGGTAATTGGAACCCGGACTGCAAGCACGATTTTCTGTTTGGGGTCTTGGAGCTAGGAGGTTCTATAGTTAATCTCACAAGCTTTTTAGCTAAGTCGGGTCGTTACAGTTGGTATCAGAGCCCAGTTTCTAGGTTCTGTAGACTCGCTTACATCGTAAGCATCAGATTTCCCCATAGCCAAGTACAAGTAAGCACGCCTCGCCATCGCCAGACTATGCCTCCACGTATTCGAGGTCGAGGATGGGGTCGTGGACGTGGTAGGGGTCATGTGTCCCTAGAGCAAGTAGATCCTCCAGTAATTCATCAAGTTGTTAATGAGCCCGAGATTCAGATGCCTGCATCGCTTGCACCCCGACGTTAG

Coding sequence (CDS)

ATGGAGAAGAGAAACAAAGATCTAAACGCAGAACATTCGAACGGTGAGCACCACCCGCAGGGGTCACGAGAAGAAAGTCGAGGTCAGCCTCGGACCCAATCTCGTCGGCCTTTATCCCGAGAGAGACAGACTGATGTCAAAATTGCTACCCTCGAGGATAAAGTAAGTGTGATGGATCATAATTTGTCTAGGATACTTCTTATCTTGAATGAATCTGGTCCTAGCACTAAAATCCATGATGAGAGATTGATTAGGGATTCAAGGAAGAGGAAGGAACCAATGGAGTACACTATAGAGTCAAAAACAAGATCGAAGGGAAAGAAGACTAACAACTTGACCAGCAAGTATCAACCGCACAACAGGAGCAGACCTACAGACCTGATCAAGGAAAAACGCAGAATGGCCAAGGCTACCGAGGCTAGAGCAGTCGAGGTCGAGGGCAAGAATGGTAACCCCCCTTGGAAGACTGAACTTCCGAACACACTGATGGAGATCGGGAATTTCCAATGGAACCTGCACAAATCAAAAGGTTTGGAGGAACAAAACTTGGAAACCCTGATCAACCAGGTTGATCTGCCCTTCACTGATGAAGTTATGAAAGCCGAGGTGCCCCAGAAGTTCAAGGTACCTACATTCAAGCCGTATGATAGCAAGAAGAACCTCGTACAACACTTAGACGTCTACAGGACATGGATGGGTTTTCACGGCGTTTCAGATGCAATCAGCGTCAGCGTCAGGCGTCCCAGTGAAGCTTGTGACCGGCGGCGAGTCTCCGGTAGCTGTGGGTCGGCGACAAAGAAGGGTTTCGGCCAACAGGTGAAGTTTTTCTCCTCTTCTTTAGGCGTTTTTCTCGCAAATTTTCCCTCTCGCCCGATCTCCCACTCCCGGTCACTCTCTCATCTGTTTTTGCGTGTTCTTCAAGCAGCAGTATCGTTAGGCGCATCAGAACTGTTTGGGGGCGTTTTAGGCGTTGTTCCGGCGTTTCGTTTAGTGGCAAACGTTCTTTTCGTATCCGATGATTTGAGTGTTGGATCTCCAAGTTTCAGCATCCTTGAGCGGGTTCCGTCCTTGGGTGGTAATTGGAACCCGGACTGCAAGCACGATTTTCTGTTTGGGGTCTTGGAGCTAGGAGGTTCTATAGTTAATCTCACAAGCTTTTTAGCTAAGTCGGGTCGTTACAGTTGGTATCAGAGCCCAGTTTCTAGGTTCTGTAGACTCGCTTACATCGTAAGCATCAGATTTCCCCATAGCCAAGTACAAGTAAGCACGCCTCGCCATCGCCAGACTATGCCTCCACGTATTCGAGGTCGAGGATGGGGTCGTGGACGTGGTAGGGGTCATGTGTCCCTAGAGCAAGTAGATCCTCCAGTAATTCATCAAGTTGTTAATGAGCCCGAGATTCAGATGCCTGCATCGCTTGCACCCCGACGTTAG

Protein sequence

MEKRNKDLNAEHSNGEHHPQGSREESRGQPRTQSRRPLSRERQTDVKIATLEDKVSVMDHNLSRILLILNESGPSTKIHDERLIRDSRKRKEPMEYTIESKTRSKGKKTNNLTSKYQPHNRSRPTDLIKEKRRMAKATEARAVEVEGKNGNPPWKTELPNTLMEIGNFQWNLHKSKGLEEQNLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSDAISVSVRRPSEACDRRRVSGSCGSATKKGFGQQVKFFSSSLGVFLANFPSRPISHSRSLSHLFLRVLQAAVSLGASELFGGVLGVVPAFRLVANVLFVSDDLSVGSPSFSILERVPSLGGNWNPDCKHDFLFGVLELGGSIVNLTSFLAKSGRYSWYQSPVSRFCRLAYIVSIRFPHSQVQVSTPRHRQTMPPRIRGRGWGRGRGRGHVSLEQVDPPVIHQVVNEPEIQMPASLAPRR
Homology
[Close]
BLAST of Lag0008972 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-10
Identity = 62/188 (32.98%), Postives = 90/188 (47.87%), Query Frame = 0 

Query: 174 KSKGLEEQNLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMG 233
           K KG +   LE L+ Q D PFT+E+M+ +VP KFK+PT KP+D     V HLD YR WM 
Sbjct: 68  KEKGFD---LEELLGQADSPFTEEIMREKVPPKFKLPTVKPFDGMTEPVDHLDAYREWMD 127

Query: 234 FHGVSDAISVSVRRPSEACDRRRVSGSCGSATKKGFGQQVKFFSSSLGVFLANF-----P 293
            +GVSDAI   V   +       ++GS     ++     +  F S    F+  F      
Sbjct: 128 IYGVSDAIRCRVFSTT-------LNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRCR 187

Query: 294 SRPISHSRSLSHLFLRVLQAAVSLGASELFGGVLGVVPAFRLVANVLFVSDDLSVGSPSF 353
           SRP+++  ++       L   V+    E    + G+  A  L+A +  V D+      SF
Sbjct: 188 SRPVAYLLTIKQRTAESLHDYVARFNEEKL-QLEGLTDAVSLLAFMSGVRDE----HLSF 240

Query: 354 SILERVPS 357
           S  +R PS
Sbjct: 248 SFEKRTPS 240

[Close]
BLAST of Lag0008972 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-10
Identity = 81/280 (28.93%), Postives = 127/280 (45.36%), Query Frame = 0 

Query: 83  LIRDSRKRKEPMEYTIESKTRSKGKKTNNLTSKYQPHNRSRPTDLIK-EKRRMAKATEAR 142
           L+RD +K K P E   E  T S G K   L        R+R  D  K +K+  + A    
Sbjct: 74  LVRDPKKGKGPTESDTEESTNSVGSK---LRIGGNTRQRTRIFDPRKTKKQHKSPAPNGG 133

Query: 143 AVEVEGKNGNPPWKTELPNTLMEIGNFQWNLHKSKGLEEQNLETLINQVDLPFTDEVMKA 202
             + + +N  P    +         + + + HK KG +   LE L++Q D PFT+E+M+ 
Sbjct: 134 KSDHDDRNSEPISLDKGKPADRPESSEKRHSHKEKGFD---LEELLDQADSPFTEEIMRE 193

Query: 203 EVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSDAISVSVRRPSEACDRRRVSGSC 262
           +VP KFK+PT K +D   + V HLD YR WM  +GVS+A+   V   +       ++GS 
Sbjct: 194 KVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTT-------LNGSA 253

Query: 263 GSATKKGFGQQVKFFSSSLGVFLANF-----PSRPISHSRSLSHLFLRVLQAAVSLGASE 322
               ++     +  F S    F+  F      SRP+++  ++       L+  V+    E
Sbjct: 254 RIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEE 313

Query: 323 LFGGVLGVVPAFRLVANVLFVSDDLSVGSPSFSILERVPS 357
               V G+  A  L+A +  V D+      SFS  +R P+
Sbjct: 314 KL-QVEGLTDAVSLLAFMSGVRDE----HLSFSFGKRTPN 335

[Close]
BLAST of Lag0008972 vs. NCBI nr
Match: KAF7143504.1 (hypothetical protein RHSIM_Rhsim05G0128200 [Rhododendron simsii])

HSP 1 Score: 63.2 bits (152), Expect = 7.2e-06
Identity = 27/59 (45.76%), Postives = 40/59 (67.80%), Query Frame = 0 

Query: 183 LETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSDAI 242
           L TL+ ++DLPFT  VM   +P KFK+PTF+P+D   + + HL+ Y+ +M  H +SD I
Sbjct: 201 LATLVQKIDLPFTAAVMAYPLPSKFKLPTFEPFDGAGDPLDHLETYKAFMLLHEISDQI 259

[Close]
BLAST of Lag0008972 vs. NCBI nr
Match: XP_023928294.1 (uncharacterized protein LOC112039644 [Quercus suber])

HSP 1 Score: 61.6 bits (148), Expect = 2.1e-05
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 0 

Query: 176 KGLEEQNLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFH 235
           KG    +L+ L+N++D PFT  V    +PQKF++P  + YD  K+L+ HL+ ++T M   
Sbjct: 31  KGRVSSDLDDLVNRIDSPFTAPVNSFPLPQKFRMPQIESYDGVKDLLDHLETFKTLMHLQ 90

Query: 236 GVSDAI 242
           GV+D I
Sbjct: 91  GVADEI 96

[Close]
BLAST of Lag0008972 vs. NCBI nr
Match: GFS31826.1 (hypothetical protein Acr_00g0019390 [Actinidia rufa])

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-05
Identity = 36/107 (33.64%), Postives = 56/107 (52.34%), Query Frame = 0 

Query: 135 AKATEARAVEVEGKNGNPPWKTELPNTLMEIGNFQWNLHKSKGLEEQNLETLINQVDLPF 194
           +KA    A+E  G+   P W  ++     ++      + K KG    ++E LIN+ D PF
Sbjct: 165 SKAKTVVALEHTGET-RPIWDEQMRQMQAQLAGVIAAV-KEKG--TNSVEELINRTDTPF 224

Query: 195 TDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSDAI 242
           T  VM+  +P KFK+PT +P+D  K+ + HL+ Y+  M    V D I
Sbjct: 225 TPAVMRVSLPLKFKMPTLEPFDGTKDPLDHLETYKALMDLQAVPDEI 267

[Close]
BLAST of Lag0008972 vs. ExPASy TrEMBL
Match: A0A6J1E1E7 (uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025548 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.1e-11
Identity = 62/188 (32.98%), Postives = 90/188 (47.87%), Query Frame = 0 

Query: 174 KSKGLEEQNLETLINQVDLPFTDEVMKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMG 233
           K KG +   LE L+ Q D PFT+E+M+ +VP KFK+PT KP+D     V HLD YR WM 
Sbjct: 68  KEKGFD---LEELLGQADSPFTEEIMREKVPPKFKLPTVKPFDGMTEPVDHLDAYREWMD 127

Query: 234 FHGVSDAISVSVRRPSEACDRRRVSGSCGSATKKGFGQQVKFFSSSLGVFLANF-----P 293
            +GVSDAI   V   +       ++GS     ++     +  F S    F+  F      
Sbjct: 128 IYGVSDAIRCRVFSTT-------LNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRCR 187

Query: 294 SRPISHSRSLSHLFLRVLQAAVSLGASELFGGVLGVVPAFRLVANVLFVSDDLSVGSPSF 353
           SRP+++  ++       L   V+    E    + G+  A  L+A +  V D+      SF
Sbjct: 188 SRPVAYLLTIKQRTAESLHDYVARFNEEKL-QLEGLTDAVSLLAFMSGVRDE----HLSF 240

Query: 354 SILERVPS 357
           S  +R PS
Sbjct: 248 SFEKRTPS 240

[Close]
BLAST of Lag0008972 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.0e-11
Identity = 81/280 (28.93%), Postives = 127/280 (45.36%), Query Frame = 0 

Query: 83  LIRDSRKRKEPMEYTIESKTRSKGKKTNNLTSKYQPHNRSRPTDLIK-EKRRMAKATEAR 142
           L+RD +K K P E   E  T S G K   L        R+R  D  K +K+  + A    
Sbjct: 74  LVRDPKKGKGPTESDTEESTNSVGSK---LRIGGNTRQRTRIFDPRKTKKQHKSPAPNGG 133

Query: 143 AVEVEGKNGNPPWKTELPNTLMEIGNFQWNLHKSKGLEEQNLETLINQVDLPFTDEVMKA 202
             + + +N  P    +         + + + HK KG +   LE L++Q D PFT+E+M+ 
Sbjct: 134 KSDHDDRNSEPISLDKGKPADRPESSEKRHSHKEKGFD---LEELLDQADSPFTEEIMRE 193

Query: 203 EVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSDAISVSVRRPSEACDRRRVSGSC 262
           +VP KFK+PT K +D   + V HLD YR WM  +GVS+A+   V   +       ++GS 
Sbjct: 194 KVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTT-------LNGSA 253

Query: 263 GSATKKGFGQQVKFFSSSLGVFLANF-----PSRPISHSRSLSHLFLRVLQAAVSLGASE 322
               ++     +  F S    F+  F      SRP+++  ++       L+  V+    E
Sbjct: 254 RIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEE 313

Query: 323 LFGGVLGVVPAFRLVANVLFVSDDLSVGSPSFSILERVPS 357
               V G+  A  L+A +  V D+      SFS  +R P+
Sbjct: 314 KL-QVEGLTDAVSLLAFMSGVRDE----HLSFSFGKRTPN 335

[Close]
BLAST of Lag0008972 vs. ExPASy TrEMBL
Match: A0A2N9FDC4 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16759 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.3e-08
Identity = 48/181 (26.52%), Postives = 91/181 (50.28%), Query Frame = 0 

Query: 97  TIESKTRSKG--KKTNNLTSKYQPHNRSRPTDLIKEKRRMAKATEARAVEVEGKNGNPP- 156
           T + K R KG  K+  +  S+Y+ ++RS        K       + +  E +G+N   P 
Sbjct: 56  TEKEKQRDKGKSKERGDAESRYKSNSRS------NNKSNNKNTVQEQEDETKGENTRMPY 115

Query: 157 ------WKTELPNTLMEIGNFQWNLHKSKGLEEQNLETLINQVDLPFTDEVMKAEVPQKF 216
                 W+ E+     ++G  +    + KG   +NL+TL+++ D PFT++V+   +P KF
Sbjct: 116 EESTAKWEQEIKAMKAQLGEMK---DEFKGRATRNLDTLVHRTDSPFTEKVISFPLPSKF 175

Query: 217 KVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSD-----AISVSVRRPSEACDRRRVSGSCG 264
           ++P+ + +D  K+ + HL+ ++T M   GV D     A   +++ P+    ++ + GS G
Sbjct: 176 RMPSLENFDGTKDPLDHLESFKTMMCLQGVPDEIMCRAFPTTLKGPARIWFKKLIPGSVG 227

[Close]
BLAST of Lag0008972 vs. ExPASy TrEMBL
Match: A0A2N9GP70 (Retrotrans_gag domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29130 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-07
Identity = 52/190 (27.37%), Postives = 93/190 (48.95%), Query Frame = 0 

Query: 97  TIESKTRSKGKK------------TNNLTSKYQPHNRS------RPTDLIKEKRRMAKAT 156
           +++ K RSKG K            TNN  S    +N S      + TD  ++ R+  + T
Sbjct: 173 SMKPKRRSKGTKGRARREATPSLDTNNNMSNNMSNNMSNNMSNNKNTDKNRKTRQRGEHT 232

Query: 157 EARAVEVEGKNGNPPWKTELPNTLMEIGNFQWNLHKSKGLEEQNLETLINQVDLPFTDEV 216
            A   E   K     W+ E+     ++G  +    + KG   +NL+TL+++ D PFT++V
Sbjct: 233 RAPYEESSAK-----WEQEIRAMKAQLGEMK---DEFKGRATRNLDTLVHRTDSPFTEKV 292

Query: 217 MKAEVPQKFKVPTFKPYDSKKNLVQHLDVYRTWMGFHGVSD-----AISVSVRRPSEACD 264
           +   +P KF++P+ + +D  K+ + HL+ ++T M   GV D     A   +++ P+    
Sbjct: 293 ISFPLPSKFRMPSLENFDGTKDPLDHLESFKTMMCLQGVPDEIMCRAFPTTLKGPARIWF 352

[Close]
BLAST of Lag0008972 vs. ExPASy TrEMBL
Match: A0A2N9GAX2 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24253 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-07
Identity = 42/177 (23.73%), Postives = 88/177 (49.72%), Query Frame = 0 

Query: 97  TIESKTRSKG--KKTNNLTSKYQPHNRSRPTDLIKEKRRMAKATEARAVEVEGKNGNPPW 156
           T + K R KG  K+  +  S+++  +  +     + ++     T         +  +  W
Sbjct: 211 TEKEKQRDKGKSKERGDAESRHEQQHEQQHEQQQEHRQEQEDETRGEHTRAPYEESSAKW 270

Query: 157 KTELPNTLMEIGNFQWNLHKSKGLEEQNLETLINQVDLPFTDEVMKAEVPQKFKVPTFKP 216
           + E+     ++G  +    + KG   +NL+TL+++ D PFT++V+   +P KF++P+ + 
Sbjct: 271 EQEIRAMKAQLGEMK---DEFKGRATRNLDTLVHRTDSPFTEKVISFPLPSKFRMPSLEN 330

Query: 217 YDSKKNLVQHLDVYRTWMGFHGVSD-----AISVSVRRPSEACDRRRVSGSCGSATK 267
           +D  K+ + HL+ ++T M   GV D     A   +++ P+    ++ + GS GS T+
Sbjct: 331 FDGTKDPLDHLESFKTMMCLQGVPDEIMCRAFPTTLKGPARIWFKKLIPGSVGSFTQ 384

The following BLAST results are available for this feature:
BLAST of Lag0008972 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159109.11.3e-1032.98uncharacterized protein LOC111025548 [Momordica charantia][more]
XP_022158830.11.7e-1028.93uncharacterized protein LOC111025293 [Momordica charantia][more]
KAF7143504.17.2e-0645.76hypothetical protein RHSIM_Rhsim05G0128200 [Rhododendron simsii][more]
XP_023928294.12.1e-0540.91uncharacterized protein LOC112039644 [Quercus suber][more]
GFS31826.12.7e-0533.64hypothetical protein Acr_00g0019390 [Actinidia rufa][more]
BLAST of Lag0008972 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0008972 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E1E76.1e-1132.98uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DWY08.0e-1128.93uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A2N9FDC48.3e-0826.52Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16759 PE=4 SV=1[more]
A0A2N9GP702.4e-0727.37Retrotrans_gag domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCU... [more]
A0A2N9GAX22.4e-0723.73Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
BLAST of Lag0008972 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 421..441
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0008972.1Lag0008972.1mRNA