Lag0008927 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0008927
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr9: 32565085 .. 32566465 (+)
RNA-Seq ExpressionLag0008927
SyntenyLag0008927
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTTGCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAATTCGAAGGTTCTCACGTGCTTTGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCCTAAGTTTGAAGGTTCTCACGTTGCTTTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTTCATGCGTTTTGCTGCAGTTCCTTCTCTCCACGTTCAAAGGTTCTCAGCATTTTGCTACAGTTCATTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGGTGAAGTTCTTTCCTCCCAAGTTCGAAGGTTCTTACGCGCTTCGGTGAAGTTCCTTCCTCCCAAGTTCGAAGGTTCTTACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTTCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTCGCTGCAGTTTCTTCTCCCTAACTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCCTAAGTTTGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGATTTTCATGCGCTTTGCTGCAGTTCCTTCTCTCCACGTTCAAAGGTTCTCACGCATTTCGCTACAGTTCATTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGTGCTTCGGTGAAGTTCCTTCCTCCCAAGTTCGAAGGTTCTTACGCGCTTCGCTGCAGTTCCTTCCTCAAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCTCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCACGCGCTGTGA

mRNA sequence

ATGGAAGTTGCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAATTCGAAGGTTCTCACGTGCTTTGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCCTAAGTTTGAAGGTTCTCACGTTGCTTTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTTCATGCGTTTTGCTGCAGTTCCTTCTCTCCACGTTCAAAGGTTCTCAGCATTTTGCTACAGTTCATTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGGTGAAGTTCTTTCCTCCCAAGTTCGAAGGTTCTTACGCGCTTCGGTGAAGTTCCTTCCTCCCAAGTTCGAAGGTTCTTACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTTCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTCGCTGCAGTTTCTTCTCCCTAACTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCCTAAGTTTGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGATTTTCATGCGCTTTGCTGCAGTTCCTTCTCTCCACGTTCAAAGTTCCTTCCTCCCAAGTTCGAAGGTTCTTACGCGCTTCGCTGCAGTTCCTTCCTCAAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCTCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCACGCGCTGTGA

Coding sequence (CDS)

ATGGAAGTTGCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAATTCGAAGGTTCTCACGTGCTTTGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCCTAAGTTTGAAGGTTCTCACGTTGCTTTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTTCATGCGTTTTGCTGCAGTTCCTTCTCTCCACGTTCAAAGGTTCTCAGCATTTTGCTACAGTTCATTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGGTGAAGTTCTTTCCTCCCAAGTTCGAAGGTTCTTACGCGCTTCGGTGAAGTTCCTTCCTCCCAAGTTCGAAGGTTCTTACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTTCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTCGCTGCAGTTTCTTCTCCCTAACTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCCTAAGTTTGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGATTTTCATGCGCTTTGCTGCAGTTCCTTCTCTCCACGTTCAAAGTTCCTTCCTCCCAAGTTCGAAGGTTCTTACGCGCTTCGCTGCAGTTCCTTCCTCAAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCTCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCACGCGCTGTGA

Protein sequence

MEVASSKFEGSHALRCSSFPQIRRFSRALLQFLPPSSKVLTRFAAVPSSQFEGSHALRCNSFLPKFEGSHVALLQFLPPSSKVFMRFAAVPSLHVQRFSAFCYSSFPPSSKVLTRFGEVPSSKSEGSHALRCSSFPQVRRFSRASLQFLPHSSKVLTRFGEVLSSQVRRFLRASVKFLPPKFEGSYALRCSSFLQVRRFSRASVKFLPPSLKVLTRFAAVPSPQVRRFSRASLQFLPPSSKVLTRFAAVPSPQVRRFSRRFAAVPSSKFEGSHIASLRAALRCSFFLQVRRFSHASLQFLLPNFEGSHALRCNSFLPKFEGSHVASLQFLPPSSKIFMRFAAVPSLHVQSSFLPSSKVLTRFAAVPSSKFEGSHALRCSFFSLSSKVLTLFDAVPSSLSSKVLTRFAAVPSSKFEGFEGSHAL
Homology
BLAST of Lag0008927 vs. NCBI nr
Match: CAE1233889.1 (unnamed protein product [Sepia pharaonis])

HSP 1 Score: 67.0 bits (162), Expect = 4.4e-07
Identity = 128/427 (29.98%), Postives = 183/427 (42.86%), Query Frame = 0

Query: 32   FLPPSSKVLTRFAAVPS---SQFEGSHALRCNSFLPKFEGSHVALLQFLPPSSKVFMR-- 91
            F  PSSK+  RF ++PS   S     H ++   F   F   H     FL     V  +  
Sbjct: 2415 FSLPSSKITNRFLSLPSIKISFLSLCHPVKFKLF--SFSAIHKITNPFLSLCHPVKSQSL 2474

Query: 92   FAAVPSLHVQRFSAFCYSSFPPSSKVLTRFGEVPSSKSEGSH-ALRCSSFPQVRR----- 151
            F ++PS    + + F +SS P S   L    +  S      H +L  SS P ++      
Sbjct: 2475 FFSLPS---SKITIFFFSSLPFSFSFLCHPVKSQSLFFSAIHFSLFFSSLPSIKSQTFSS 2534

Query: 152  ----FSRASLQFLPHSSKVLTRFGEVL-SSQVRRFLRASVKFLPPKFEGSYALRCSS--F 211
                    SL F   SSK+  RF   L SS++  F       +  +F  S     SS  F
Sbjct: 2535 LCHPVKSQSLFFSLPSSKITIRFFFSLPSSKICLFFSLPSSKITNRFFFSAIHPFSSLPF 2594

Query: 212  LQVRRFSRASVKFLPPSLKVLTRFAAVPSPQVRRFSRASLQFLPPSSKVLTRFAAVPSPQ 271
                 FS        P   +L  F ++PS +++ FS  SL    PSSK+   F ++PS +
Sbjct: 2595 KNAFFFSLPFSSLCHPVKSLL--FFSLPSIKLQSFSFFSL----PSSKISILFFSLPSIK 2654

Query: 272  VRRF--------SRRFAAVPSSKFEGSHIASLRAALRCSFFLQVRR--FSHASLQFLLPN 331
             + F        S+ F ++PSSK     I  L +A++ S F  +    F H +  FLL  
Sbjct: 2655 SQSFSSLCHPVKSQSFFSLPSSKIT---IPFLLSAIQFSSFFPLSPFFFCHPTNSFLL-- 2714

Query: 332  FEGSHALRCNSFLPKFEGSHVASLQFLPPSSKIFMRFAAVPSLHVQSSF----------- 391
               S   +  +       S +  L    PSSKI M F ++PS  + + F           
Sbjct: 2715 ---SAIHKITNLFFSLPSSKITILFLSLPSSKITMSFFSLPSSKITNPFLLSAIHKIFFF 2774

Query: 392  -LPSSKVLTRFAAVPSSKFEGSHALRCSFFSL-SSKVLTLFDAVPSSLSSKVLTRFAAVP 418
             LPSSK+   F ++PSSK    H L   FFSL SSK+  LF ++P   SSK+   F ++P
Sbjct: 2775 SLPSSKITNPFFSLPSSKI---HPL---FFSLPSSKITILFFSLP---SSKIF--FFSLP 2811

BLAST of Lag0008927 vs. NCBI nr
Match: EDO30234.1 (predicted protein, partial [Nematostella vectensis])

HSP 1 Score: 56.2 bits (134), Expect = 7.8e-04
Identity = 73/266 (27.44%), Postives = 110/266 (41.35%), Query Frame = 0

Query: 109 SSKVLTRFGEVPSSKSEGSHALRCSSFPQVRRFSRAS----LQFLPHSSKVLTRFGEVLS 168
           +S  +TRFG    S S        S+ PQ+ RF R++     +F   +S  +TRFG   S
Sbjct: 15  ASPQITRFGR---SASRQITRFGRSASPQITRFGRSASPQITRFARSASPQITRFGRSAS 74

Query: 169 SQVRRFLRASVKFLPPKFEGSYALRCSSFLQVRRFSRAS----VKFLPPSLKVLTRFAAV 228
            Q+ RF R                  S+  Q+ RF R++     +F   +   +TRF   
Sbjct: 75  PQITRFGR------------------SASPQITRFGRSASPQITRFGRSASPQITRFGRS 134

Query: 229 PSPQVRRFSRAS----LQFLPPSSKVLTRFAAVPSPQVRRFSRRFAAVPSSKFEGSHIAS 288
            SPQ+ RF+R++     +F   +S  +TRFA   SPQ+ RF R  +A P     G   + 
Sbjct: 135 ASPQITRFARSASPQITRFARSASPQITRFARSASPQITRFGR--SASPQITRFGRSASP 194

Query: 289 LRAALRCSFFLQVRRFSHASLQFLLPNFEGSHALRCNSFLPKFEGSHVASLQFLPPSSKI 348
                  S   Q+ RF  AS    +  F  S + +   F      +     +F   +S  
Sbjct: 195 QITRFGRSASPQITRFGTASASPQITRFGRSASPQITRF---GRSASPQITRFARSASPQ 254

Query: 349 FMRFAAVPSLHVQSSFLPSSKVLTRF 363
             RFA   S  +      +S  +TRF
Sbjct: 255 ITRFARSASPQITRFARSASPQITRF 254

BLAST of Lag0008927 vs. ExPASy TrEMBL
Match: A7T1D9 (Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g16904 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.8e-04
Identity = 73/266 (27.44%), Postives = 110/266 (41.35%), Query Frame = 0

Query: 109 SSKVLTRFGEVPSSKSEGSHALRCSSFPQVRRFSRAS----LQFLPHSSKVLTRFGEVLS 168
           +S  +TRFG    S S        S+ PQ+ RF R++     +F   +S  +TRFG   S
Sbjct: 15  ASPQITRFGR---SASRQITRFGRSASPQITRFGRSASPQITRFARSASPQITRFGRSAS 74

Query: 169 SQVRRFLRASVKFLPPKFEGSYALRCSSFLQVRRFSRAS----VKFLPPSLKVLTRFAAV 228
            Q+ RF R                  S+  Q+ RF R++     +F   +   +TRF   
Sbjct: 75  PQITRFGR------------------SASPQITRFGRSASPQITRFGRSASPQITRFGRS 134

Query: 229 PSPQVRRFSRAS----LQFLPPSSKVLTRFAAVPSPQVRRFSRRFAAVPSSKFEGSHIAS 288
            SPQ+ RF+R++     +F   +S  +TRFA   SPQ+ RF R  +A P     G   + 
Sbjct: 135 ASPQITRFARSASPQITRFARSASPQITRFARSASPQITRFGR--SASPQITRFGRSASP 194

Query: 289 LRAALRCSFFLQVRRFSHASLQFLLPNFEGSHALRCNSFLPKFEGSHVASLQFLPPSSKI 348
                  S   Q+ RF  AS    +  F  S + +   F      +     +F   +S  
Sbjct: 195 QITRFGRSASPQITRFGTASASPQITRFGRSASPQITRF---GRSASPQITRFARSASPQ 254

Query: 349 FMRFAAVPSLHVQSSFLPSSKVLTRF 363
             RFA   S  +      +S  +TRF
Sbjct: 255 ITRFARSASPQITRFARSASPQITRF 254

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAE1233889.14.4e-0729.98unnamed protein product [Sepia pharaonis][more]
EDO30234.17.8e-0427.44predicted protein, partial [Nematostella vectensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A7T1D93.8e-0427.44Predicted protein (Fragment) OS=Nematostella vectensis OX=45351 GN=v1g16904 PE=4... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0008927.1Lag0008927.1mRNA