Lag0008918 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0008918
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionAdenine phosphoribosyltransferase
Locationchr9: 32294345 .. 32295525 (-)
RNA-Seq ExpressionLag0008918
SyntenyLag0008918
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGTTGGAGCCGTCAAACCACATGAACGGGCGTTAGTGGTGGACGTCTTGATTGCAACAGGTGGCACTCTTCGTGCAGCTATGAATTTACTTGGTGAGCTACTTTTGATATTGTTATATGAGATAAAGAAGTTAAGTTATCATATAGTAGGATATTATAACTTATGGCATAAGGAATTATTTGCTAACGTTAGAAAAGTCTATTATATGAAAACTGCCATTTTGGATCCAGATTTGATGCCTGTTTTTGTTTGATATGAAGTCCTTGTGTCTTTTAAAGTCTAAGCCAGTGCCCTGAAGCTTTAGCATAAAGACAGTGATGTCTTTTAAAGTCCTTGTGTCTTCCTCCTTCAAGGTCTCCCTCCATGTTTATACTTTCATGTGTTGCACGGTACTTATCAATTTATGTATGGCCTCTTTGTTTTCTGAATTCTTAACTATTTAGATTATTATGTTATCAATTTTATATAACAGTTGGTCTTGGTGATAATTATTTTTGTACAAAATGTGATGGTGGAAAAATCTCACTGTGGCATTTTGGTCCTGAAAGAGCTACGTTTTGTTGCCCTAAACATACAACAAACTTTTTTTTAGCTTTACCTGTAAGATTAGTGGTTAGGCGTAGAAATTCTTTTCTTCCATTTTCTTCTGTCATGATTAACTTGATTTCTCTTGCTTTGTAAATTTTTATTTACATTAATGCTGAGCAGGATTCATGTTCTCAATGTGGCTAGGAAAATTGTGGCAAGGATGCTGGGAAGCAATGAGTCAGCATTTGAGGTTGTTCGAAGTCAATCTTTGGTAGCAGACAATAAGTTGATTGGCCACTAATCTTTCTTATGTATAAAACTTGTAAGTTAAAAGTTTTTTCGTTTGAAAGCTAAGTTAGATTTACTACAAAACAACTGTTTTTAGTTTTTTTATAAAACTATTTTTAAATTGTATTTGTTGTGAGGTATGACTCGCTTTGTTTTGTGGAAGTTCGGAGTCTGTTTGTTGACTTGAAGTTTTGTGGAAGTTTGTAGTTTAGCAGTTTTGAATGTAGAAGTGTGTTCTCTTGTTTAACAGGTGTTAAGAAAATTTGGGATAGCCATATGTATGTTGTTCAAAGGATGTCGGGAAGCTCCTTGCCAATGAAGCTGCTCAAAGGATGTAGGGAAGGTGAACTTTTAGAATAA

mRNA sequence

ATGCATGTTGGAGCCGTCAAACCACATGAACGGGCGTTAGTGGTGGACGTCTTGATTGCAACAGGTGGCACTCTTCGTGCAGCTATGAATTTACTTGGTGTTAAGAAAATTTGGGATAGCCATATGTATGTTGTTCAAAGGATGTCGGGAAGCTCCTTGCCAATGAAGCTGCTCAAAGGATGTAGGGAAGGTGAACTTTTAGAATAA

Coding sequence (CDS)

ATGCATGTTGGAGCCGTCAAACCACATGAACGGGCGTTAGTGGTGGACGTCTTGATTGCAACAGGTGGCACTCTTCGTGCAGCTATGAATTTACTTGGTGTTAAGAAAATTTGGGATAGCCATATGTATGTTGTTCAAAGGATGTCGGGAAGCTCCTTGCCAATGAAGCTGCTCAAAGGATGTAGGGAAGGTGAACTTTTAGAATAA

Protein sequence

MHVGAVKPHERALVVDVLIATGGTLRAAMNLLGVKKIWDSHMYVVQRMSGSSLPMKLLKGCREGELLE
Homology
[Close]
BLAST of Lag0008918 vs. NCBI nr
Match: XP_004147592.1 (adenine phosphoribosyltransferase 3 [Cucumis sativus] >KGN50225.1 hypothetical protein Csa_000679 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-06
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1   MHVGAVKPHERALVVDVLIATGGTLRAAMNLL 33
           MHVGAVKPHERALVVD LIATGGTLRAAMNLL
Sbjct: 114 MHVGAVKPHERALVVDDLIATGGTLRAAMNLL 145

[Close]
BLAST of Lag0008918 vs. NCBI nr
Match: XP_038876344.1 (adenine phosphoribosyltransferase 3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-06
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1   MHVGAVKPHERALVVDVLIATGGTLRAAMNLL 33
           MHVGA+KPHERALVVD LIATGGTLRAAMNLL
Sbjct: 117 MHVGAIKPHERALVVDDLIATGGTLRAAMNLL 148

[Close]
BLAST of Lag0008918 vs. NCBI nr
Match: XP_022156477.1 (adenine phosphoribosyltransferase 3-like [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-06
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1   MHVGAVKPHERALVVDVLIATGGTLRAAMNLL 33
           MHVGA+KPHERALVVD LIATGGTLRAAMNLL
Sbjct: 114 MHVGAIKPHERALVVDDLIATGGTLRAAMNLL 145

[Close]
BLAST of Lag0008918 vs. NCBI nr
Match: XP_038876345.1 (adenine phosphoribosyltransferase 3-like isoform X2 [Benincasa hispida])

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-06
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1   MHVGAVKPHERALVVDVLIATGGTLRAAMNLL 33
           MHVGA+KPHERALVVD LIATGGTLRAAMNLL
Sbjct: 114 MHVGAIKPHERALVVDDLIATGGTLRAAMNLL 145

[Close]
BLAST of Lag0008918 vs. NCBI nr
Match: XP_023550317.1 (adenine phosphoribosyltransferase 3-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 61.2 bits (147), Expect = 3.9e-06
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 1   MHVGAVKPHERALVVDVLIATGGTLRAAMNLLG 34
           MHVGAVKPHERALVVD LIATGGTL AAMNLLG
Sbjct: 114 MHVGAVKPHERALVVDDLIATGGTLCAAMNLLG 146

[Close]
BLAST of Lag0008918 vs. ExPASy Swiss-Prot
Match: Q9LFP0 (Adenine phosphoribosyltransferase 5 OS=Arabidopsis thaliana OX=3702 GN=APT5 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.5e-05
Identity = 22/32 (68.75%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 1   MHVGAVKPHERALVVDVLIATGGTLRAAMNLL 33
           MHVGAV+P ER +++D L+ATGGTL AAM+LL
Sbjct: 117 MHVGAVEPRERVIIIDDLVATGGTLSAAMSLL 148

[Close]
BLAST of Lag0008918 vs. ExPASy Swiss-Prot
Match: P31166 (Adenine phosphoribosyltransferase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APT1 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-05
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 1   MHVGAVKPHERALVVDVLIATGGTLRAAMNLL---GVK 36
           MHVGAV+P ERA+++D LIATGGTL AA+ LL   GVK
Sbjct: 174 MHVGAVEPGERAIIIDDLIATGGTLAAAIRLLERVGVK 211

[Close]
BLAST of Lag0008918 vs. ExPASy Swiss-Prot
Match: Q9SUW2 (Adenine phosphoribosyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=APT3 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 7.6e-05
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 1   MHVGAVKPHERALVVDVLIATGGTLRAAMNLL 33
           MH+GAV+  +RALVVD LIATGGTL AA+NLL
Sbjct: 115 MHIGAVEAGDRALVVDDLIATGGTLCAAINLL 146

[Close]
BLAST of Lag0008918 vs. ExPASy Swiss-Prot
Match: Q43199 (Adenine phosphoribosyltransferase 1 OS=Triticum aestivum OX=4565 GN=APT1 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-04
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 1   MHVGAVKPHERALVVDVLIATGGTLRAAMNLL 33
           MHVGAV+P++R L+VD LIATGGTL AA  L+
Sbjct: 110 MHVGAVQPNDRVLIVDDLIATGGTLCAAAKLI 141

[Close]
BLAST of Lag0008918 vs. ExPASy Swiss-Prot
Match: Q9SU38 (Adenine phosphoribosyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=APT4 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.9e-04
Identity = 25/32 (78.12%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 1   MHVGAVKPHERALVVDVLIATGGTLRAAMNLL 33
           MHV AV   +RALVVD LIATGGTL AAMNLL
Sbjct: 114 MHVEAVDSGDRALVVDDLIATGGTLCAAMNLL 145

The following BLAST results are available for this feature:
BLAST of Lag0008918 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147592.12.3e-0696.88adenine phosphoribosyltransferase 3 [Cucumis sativus] >KGN50225.1 hypothetical p... [more]
XP_038876344.13.0e-0693.75adenine phosphoribosyltransferase 3-like isoform X1 [Benincasa hispida][more]
XP_022156477.13.0e-0693.75adenine phosphoribosyltransferase 3-like [Momordica charantia][more]
XP_038876345.13.0e-0693.75adenine phosphoribosyltransferase 3-like isoform X2 [Benincasa hispida][more]
XP_023550317.13.9e-0693.94adenine phosphoribosyltransferase 3-like isoform X1 [Cucurbita pepo subsp. pepo][more]
BLAST of Lag0008918 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LFP01.5e-0568.75Adenine phosphoribosyltransferase 5 OS=Arabidopsis thaliana OX=3702 GN=APT5 PE=1... [more]
P311662.0e-0568.42Adenine phosphoribosyltransferase 1, chloroplastic OS=Arabidopsis thaliana OX=37... [more]
Q9SUW27.6e-0575.00Adenine phosphoribosyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=APT3 PE=1... [more]
Q431991.7e-0468.75Adenine phosphoribosyltransferase 1 OS=Triticum aestivum OX=4565 GN=APT1 PE=2 SV... [more]
Q9SU382.9e-0478.13Adenine phosphoribosyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=APT4 PE=1... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029057Phosphoribosyltransferase-likeGENE3D3.40.50.2020coord: 1..47
e-value: 2.9E-7
score: 31.8
IPR029057Phosphoribosyltransferase-likeSUPERFAMILY53271PRTase-likecoord: 1..32
IPR000836Phosphoribosyltransferase domainCDDcd06223PRTases_typeIcoord: 1..37
e-value: 3.13469E-5
score: 36.99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0008918.1Lag0008918.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006168 adenine salvage
biological_process GO:0044209 AMP salvage
biological_process GO:0006166 purine ribonucleoside salvage
biological_process GO:0009116 nucleoside metabolic process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003999 adenine phosphoribosyltransferase activity