Lag0008826 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0008826
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	cell division cycle 20.2, cofactor of APC complex-like
Location	chr9: 30706303 .. 30706828 (+)
RNA-Seq Expression	Lag0008826
Synteny	Lag0008826

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGAAAATGTTGATTCCTATGCCTGCACCTCTTGGCCTTGTCTTCCTTGGAAAATGCTAATCACTCGCATTCTCCCCTTCAAGAACAACATCTCCAGAAAAAGCATTTGCAAGAAAATGTAAGCGTTTATTCGTAATTATAGAAATTGAAATCAATTAGATGAAGATGAACTTCTTCTTTTTTTCATGAGAAATTGTTTGAATCCATCTGTCCATTGTATCTTAAGGTAATGTGATGTGAAGCGTTTTCTTTTTCCTCTTCCAATTACAGTTGGATAGATTTATTTCGAATCGGTCGGCAATGGATTTCAATTATGCACACTACATGGTGACTGAAGGGAGGAAAGTTAAGGAAAACCCTTCTTTTAGTTCGCCCTCTAGGGAGGCTTATCAAAAGCGTTTAGCTGAGACATTCAACATGAATCGAATGAGAAAACTACATATCAAAGGAAAGCCTGATCTCAGGAAGAAGGTCCTTCTGCTGTCATTGTTAGGCAGCGCAAGCATGACAACAAAGGATTGA

mRNA sequence

ATGCAGGAAAATGTTGATTCCTATGCCTGCACCTCTTGGCCTTGTCTTCCTTGGAAAATGCTAATCACTCGCATTCTCCCCTTCAAGAACAACATCTCCAGAAAAAGCATTTGCAAGAAAATCGTTTTCTTTTTCCTCTTCCAATTACAGTTGGATAGATTTATTTCGAATCGGTCGGCAATGGATTTCAATTATGCACACTACATGGTGACTGAAGGGAGGAAAGTTAAGGAAAACCCTTCTTTTAGTTCGCCCTCTAGGGAGGCTTATCAAAAGCGTTTAGCTGAGACATTCAACATGAATCGAATGAGAAAACTACATATCAAAGGAAAGCCTGATCTCAGGAAGAAGGTCCTTCTGCTGTCATTGTTAGGCAGCGCAAGCATGACAACAAAGGATTGA

Coding sequence (CDS)

ATGCAGGAAAATGTTGATTCCTATGCCTGCACCTCTTGGCCTTGTCTTCCTTGGAAAATGCTAATCACTCGCATTCTCCCCTTCAAGAACAACATCTCCAGAAAAAGCATTTGCAAGAAAATCGTTTTCTTTTTCCTCTTCCAATTACAGTTGGATAGATTTATTTCGAATCGGTCGGCAATGGATTTCAATTATGCACACTACATGGTGACTGAAGGGAGGAAAGTTAAGGAAAACCCTTCTTTTAGTTCGCCCTCTAGGGAGGCTTATCAAAAGCGTTTAGCTGAGACATTCAACATGAATCGAATGAGAAAACTACATATCAAAGGAAAGCCTGATCTCAGGAAGAAGGTCCTTCTGCTGTCATTGTTAGGCAGCGCAAGCATGACAACAAAGGATTGA

Protein sequence

MQENVDSYACTSWPCLPWKMLITRILPFKNNISRKSICKKIVFFFLFQLQLDRFISNRSAMDFNYAHYMVTEGRKVKENPSFSSPSREAYQKRLAETFNMNRMRKLHIKGKPDLRKKVLLLSLLGSASMTTKD

Homology

[Close]

BLAST of Lag0008826 vs. NCBI nr
Match: XP_008461771.1 (PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Cucumis melo] >KAA0048303.1 cell division cycle 20.2, cofactor of APC complex-like [Cucumis melo var. makuwa] >TYK10648.1 cell division cycle 20.2, cofactor of APC complex-like [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 9.3e-20
Identity = 56/78 (71.79%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 51  LDRFISNRSAMDFNYAHYMVTEGRKVKENPSFSSPSREAYQKRLAETFNMNRMRKLHIKG 110
           LDRFI NRSAMDF+YAHYMVTEGRK KENPSFSSPSREAYQKRLAETFNMNR R L  K 
Sbjct: 32  LDRFIPNRSAMDFDYAHYMVTEGRKGKENPSFSSPSREAYQKRLAETFNMNRTRILAFKN 91

Query: 111 KPDLRKKVLLLSLLGSAS 129
           KP    +++      S S
Sbjct: 92  KPPAPVELIPKEFFSSVS 109

[Close]

BLAST of Lag0008826 vs. NCBI nr
Match: XP_004149610.1 (cell division cycle 20.2, cofactor of APC complex [Cucumis sativus] >KGN58619.1 hypothetical protein Csa_000850 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 9.3e-20
Identity = 56/78 (71.79%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 51  LDRFISNRSAMDFNYAHYMVTEGRKVKENPSFSSPSREAYQKRLAETFNMNRMRKLHIKG 110
           LDRFI NRSAMDF+YAHYMVTEGRK KENPSFSSPSREAYQKRLAETFNMNR R L  K 
Sbjct: 32  LDRFIPNRSAMDFDYAHYMVTEGRKGKENPSFSSPSREAYQKRLAETFNMNRTRILAFKN 91

Query: 111 KPDLRKKVLLLSLLGSAS 129
           KP    +++      S S
Sbjct: 92  KPPAPVELIPKEFFSSVS 109

[Close]

BLAST of Lag0008826 vs. NCBI nr
Match: KAF7147427.1 (hypothetical protein RHSIM_Rhsim03G0220500 [Rhododendron simsii])

HSP 1 Score: 104.8 bits (260), Expect = 6.0e-19
Identity = 54/84 (64.29%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 29  KNNISRKSICKKIVFFFLFQLQLDRFISNRSAMDFNYAHYMVTEGRKVKENPSFSSPSRE 88
           +  ISR ++C  +V  +     LDRFI NRSAMDF+YAHYM+TEGRK KENP+ SSPSRE
Sbjct: 280 QRKISRDNVCNIVVATY-----LDRFIPNRSAMDFDYAHYMLTEGRKGKENPAVSSPSRE 339

Query: 89  AYQKRLAETFNMNRMRKLHIKGKP 113
           AY+K+LAETFNMNR R L  K KP
Sbjct: 340 AYRKQLAETFNMNRTRILAFKNKP 358

[Close]

BLAST of Lag0008826 vs. NCBI nr
Match: XP_022930981.1 (cell division cycle 20.2, cofactor of APC complex-like [Cucurbita moschata])

HSP 1 Score: 104.4 bits (259), Expect = 7.9e-19
Identity = 54/78 (69.23%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 51  LDRFISNRSAMDFNYAHYMVTEGRKVKENPSFSSPSREAYQKRLAETFNMNRMRKLHIKG 110
           LDRFI NRSAMDF+YAHYMVTEGRK KENP+FSSPS+EAYQKRLAET NMNR R L  K 
Sbjct: 32  LDRFIPNRSAMDFDYAHYMVTEGRKGKENPTFSSPSKEAYQKRLAETLNMNRTRILAFKN 91

Query: 111 KPDLRKKVLLLSLLGSAS 129
           KP    +++      SAS
Sbjct: 92  KPPAPVEMIPKEFFSSAS 109

[Close]

BLAST of Lag0008826 vs. NCBI nr
Match: KAG7036205.1 (Cell division cycle 20.1, cofactor of APC complex [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.4 bits (259), Expect = 7.9e-19
Identity = 54/78 (69.23%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 51  LDRFISNRSAMDFNYAHYMVTEGRKVKENPSFSSPSREAYQKRLAETFNMNRMRKLHIKG 110
           LDRFI NRSAMDF+YAHYMVTEGRK KENP+FSSPS+EAYQKRLAET NMNR R L  K 
Sbjct: 32  LDRFIPNRSAMDFDYAHYMVTEGRKGKENPTFSSPSKEAYQKRLAETLNMNRTRILAFKN 91

Query: 111 KPDLRKKVLLLSLLGSAS 129
           KP    +++      SAS
Sbjct: 92  KPPAPVEMIPKEFFSSAS 109

[Close]

BLAST of Lag0008826 vs. ExPASy Swiss-Prot
Match: Q9SZA4 (Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.7e-13
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 51  LDRFISNRSAMDFNYAHYMVTEGRKVK-ENPSFSSPSREAYQKRLAETFNMNRMRKLHIK 110
           LDRFI NRSAM+F+YAH+ +TEGRK K +  + SSPS+EAY+K+LAET N+N  R L  +
Sbjct: 34  LDRFIPNRSAMNFDYAHFALTEGRKGKDQTAAVSSPSKEAYRKQLAETMNLNHTRILAFR 93

Query: 111 GKPDLRKKVL 120
            KP    ++L
Sbjct: 94  NKPQAPVELL 103

[Close]

BLAST of Lag0008826 vs. ExPASy Swiss-Prot
Match: Q9S7I8 (Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.3e-12
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 51  LDRFISNRSAMDFNYAHYMVTEGRKVK-ENPSFSSPSREAYQKRLAETFNMNRMRKLHIK 110
           LDRFI NRSAM+F+YAH+ +TE RK K ++ + SSPS+EAY+K+LAET N+N  R L  +
Sbjct: 24  LDRFIPNRSAMNFDYAHFALTEERKGKDQSATVSSPSKEAYRKQLAETMNLNHTRILAFR 83

Query: 111 GKPDLRKKVL 120
            KP    ++L
Sbjct: 84  NKPQAPVELL 93

[Close]

BLAST of Lag0008826 vs. ExPASy Swiss-Prot
Match: Q3E906 (Cell division cycle 20.5, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-5 PE=1 SV=3)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-08
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 30  NNISRKSICKKIVFFF---LFQLQLDRFISNRSAMDFNYAHYMVTEGRKVKENPSFSSPS 89
           +++  ++ C  +  F    L +   DRFI NRSAMDF++A+Y +T+GRK +     +S S
Sbjct: 6   SHLKAQASCPLVEHFLRRKLSKENFDRFIPNRSAMDFDFANYALTQGRK-RNVDEVTSAS 65

Query: 90  REAYQKRLAETFNMNRMRKLHIKGKP 113
           R+AY  +LAE  N NR R L  + KP
Sbjct: 66  RKAYMTQLAEAMNQNRTRILAFRNKP 90

[Close]

BLAST of Lag0008826 vs. ExPASy Swiss-Prot
Match: Q9S7H3 (Cell division cycle 20.3, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-3 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-08
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 46  LFQLQLDRFISNRSAMDFNYAHYMVTEGRKVKENPSFSSPSREAYQKRLAETFNMNRMRK 105
           L +  LDRFI NRSAMDF++A+Y +T+GRK +     +S SR+AY  +LA   N NR R 
Sbjct: 17  LSKQNLDRFIPNRSAMDFDFANYALTQGRK-RNVDEITSASRKAYMTQLAVVMNQNRTRI 76

Query: 106 LHIKGKP 113
           L  + KP
Sbjct: 77  LAFRNKP 82

[Close]

BLAST of Lag0008826 vs. ExPASy Swiss-Prot
Match: Q4PSE4 (Cell division cycle 20.4, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-4 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.5e-07
Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 46  LFQLQLDRFISNRSAMDFNYAHYMVTEGRKVKENPSFSSPSREAYQKRLAETFNMNRMRK 105
           L +  LDRFI NRSA DF++A+Y +T+G K +     +S SR+AY  +LA   N NR R 
Sbjct: 20  LSKQNLDRFIPNRSAKDFDFANYALTQGSK-RNLDEVTSASRKAYMTQLAVVMNQNRTRI 79

Query: 106 LHIKGKP 113
           L  + KP
Sbjct: 80  LAFRNKP 85

The following BLAST results are available for this feature:

BLAST of Lag0008826 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461771.1	9.3e-20	71.79	PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Cucumis melo]...	[more]
XP_004149610.1	9.3e-20	71.79	cell division cycle 20.2, cofactor of APC complex [Cucumis sativus] >KGN58619.1 ...	[more]
KAF7147427.1	6.0e-19	64.29	hypothetical protein RHSIM_Rhsim03G0220500 [Rhododendron simsii]	[more]
XP_022930981.1	7.9e-19	69.23	cell division cycle 20.2, cofactor of APC complex-like [Cucurbita moschata]	[more]
KAG7036205.1	7.9e-19	69.23	Cell division cycle 20.1, cofactor of APC complex [Cucurbita argyrosperma subsp....	[more]

BLAST of Lag0008826 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZA4	6.7e-13	55.71	Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=370...	[more]
Q9S7I8	4.3e-12	54.29	Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=370...	[more]
Q3E906	1.3e-08	40.70	Cell division cycle 20.5, cofactor of APC complex OS=Arabidopsis thaliana OX=370...	[more]
Q9S7H3	1.7e-08	49.25	Cell division cycle 20.3, cofactor of APC complex OS=Arabidopsis thaliana OX=370...	[more]
Q4PSE4	5.5e-07	46.27	Cell division cycle 20.4, cofactor of APC complex OS=Arabidopsis thaliana OX=370...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033010	The WD repeat Cdc20/Fizzy family	PANTHER	PTHR19918	CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED	coord: 50..113
None	No IPR available	PANTHER	PTHR19918:SF50	CELL DIVISION CYCLE 20.2, COFACTOR OF APC COMPLEX-LIKE	coord: 50..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0008826.1	Lag0008826.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:1905786	positive regulation of anaphase-promoting complex-dependent catabolic process
biological_process	GO:1904668	positive regulation of ubiquitin protein ligase activity
cellular_component	GO:0005680	anaphase-promoting complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0010997	anaphase-promoting complex binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:1990757	ubiquitin ligase activator activity
molecular_function	GO:0097027	ubiquitin-protein transferase activator activity