Lag0008776 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0008776
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein FAR-RED ELONGATED HYPOCOTYL 3-like
Location	chr9: 29743443 .. 29743751 (+)
RNA-Seq Expression	Lag0008776
Synteny	Lag0008776

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCATGGTAAATATGCGCATCTACTTATCACATGGGCAGCTGTGGATTGTACGGAAGTTTACCAATGAGCACAGTTGTTCCATTGATGTAGTTCAAAACGATCACAGGCTAGCGACTGCATGCGTTGCGTGCGAGTATGCAAAGATTATAATAAGGGCCGCTAACAGGTTGCACTGCACACATTGGGATATAATGGAGTATGCTAGGAAAAATCATGGAATCAATATTAGTTATGACAAAGCATGGAGGGGAAGAGAGAAGGCTCTAAATGAGATAAGAGGATCCCCTGAACAGTCCTATGCGTAA

mRNA sequence

ATGCCCATGGTAAATATGCGCATCTACTTATCACATGGGCAGCTGTGGATTGTACGGAAGTTTACCAATGAGCACAGTTGTTCCATTGATGTAGTTCAAAACGATCACAGGCTAGCGACTGCATGCGTTGCGTGCGAGTATGCAAAGATTATAATAAGGGCCGCTAACAGGTTGCACTGCACACATTGGGATATAATGGAGTATGCTAGGAAAAATCATGGAATCAATATTAGTTATGACAAAGCATGGAGGGGAAGAGAGAAGGCTCTAAATGAGATAAGAGGATCCCCTGAACAGTCCTATGCGTAA

Coding sequence (CDS)

ATGCCCATGGTAAATATGCGCATCTACTTATCACATGGGCAGCTGTGGATTGTACGGAAGTTTACCAATGAGCACAGTTGTTCCATTGATGTAGTTCAAAACGATCACAGGCTAGCGACTGCATGCGTTGCGTGCGAGTATGCAAAGATTATAATAAGGGCCGCTAACAGGTTGCACTGCACACATTGGGATATAATGGAGTATGCTAGGAAAAATCATGGAATCAATATTAGTTATGACAAAGCATGGAGGGGAAGAGAGAAGGCTCTAAATGAGATAAGAGGATCCCCTGAACAGTCCTATGCGTAA

Protein sequence

MPMVNMRIYLSHGQLWIVRKFTNEHSCSIDVVQNDHRLATACVACEYAKIIIRAANRLHCTHWDIMEYARKNHGINISYDKAWRGREKALNEIRGSPEQSYA

Homology

[Close]

BLAST of Lag0008776 vs. NCBI nr
Match: TYK29863.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-21
Identity = 49/88 (55.68%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 15  LWIVRKFTNEHSCSIDVVQNDHRLATACVACEYAKIIIRAANRLHCTHWDIMEYARKNHG 74
           +WIVRKFT+ H CS+DVV+NDH+ AT+ +  E  K+I +  ++  C   D++ Y + +HG
Sbjct: 121 IWIVRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLIFKTNDKAPCRPSDVINYMKIHHG 180

Query: 75  INISYDKAWRGREKALNEIRGSPEQSYA 103
           +NISYDKAWRGRE ALN IRG+PE SYA
Sbjct: 181 VNISYDKAWRGREIALNSIRGTPEDSYA 208

[Close]

BLAST of Lag0008776 vs. NCBI nr
Match: KAA0061274.1 (uncharacterized protein E6C27_scaffold455G001170 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-21
Identity = 49/88 (55.68%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 15  LWIVRKFTNEHSCSIDVVQNDHRLATACVACEYAKIIIRAANRLHCTHWDIMEYARKNHG 74
           +WIVRKFT+ H CS+DVV+NDH+ AT+ +  E  K+I +  ++  C   D++ Y + +HG
Sbjct: 173 IWIVRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLIFKMNDKAPCRPSDVINYMKIHHG 232

Query: 75  INISYDKAWRGREKALNEIRGSPEQSYA 103
           +NISYDKAWRGRE ALN IRG+PE SYA
Sbjct: 233 VNISYDKAWRGREIALNSIRGTPEDSYA 260

[Close]

BLAST of Lag0008776 vs. NCBI nr
Match: KAA0067552.1 (protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYJ97202.1 protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 4.9e-21
Identity = 47/88 (53.41%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 15  LWIVRKFTNEHSCSIDVVQNDHRLATACVACEYAKIIIRAANRLHCTHWDIMEYARKNHG 74
           +WI+RKFT+ H CS+DVV+NDH+ AT+ +  E  K+I +  ++  C   D++ Y + +HG
Sbjct: 203 IWIIRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLIFKTNDKAPCRPSDVINYMKIHHG 262

Query: 75  INISYDKAWRGREKALNEIRGSPEQSYA 103
           +NISYDKAWRGRE ALN I+G+PE SYA
Sbjct: 263 VNISYDKAWRGREIALNSIKGTPEDSYA 290

[Close]

BLAST of Lag0008776 vs. NCBI nr
Match: KAA0039579.1 (protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYK01721.1 protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 48/93 (51.61%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 10  LSHGQLWIVRKFTNEHSCSIDVVQNDHRLATACVACEYAKIIIRAANRLHCTHWDIMEYA 69
           L    +WIVRKFT+ H CS+DVV+NDH+ AT+ +  E  K+I +  ++  C   D++ Y 
Sbjct: 198 LKKSDIWIVRKFTDTHLCSVDVVKNDHKQATSLIVSECTKLIFKMNDKAPCRPSDVINYM 257

Query: 70  RKNHGINISYDKAWRGREKALNEIRGSPEQSYA 103
           + +HG+N+SYDKAWRGRE ALN IRG+ E SYA
Sbjct: 258 KIHHGVNVSYDKAWRGREIALNSIRGTLEDSYA 290

[Close]

BLAST of Lag0008776 vs. NCBI nr
Match: KAA0047666.1 (MuDR family transposase [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 2.4e-20
Identity = 47/88 (53.41%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 15  LWIVRKFTNEHSCSIDVVQNDHRLATACVACEYAKIIIRAANRLHCTHWDIMEYARKNHG 74
           +WIVRKFT+ H CS+DVV+NDH+ AT+ +  E  K+I +  ++  C   +++ Y + +HG
Sbjct: 121 IWIVRKFTDTHLCSVDVVKNDHKQATSSIVSECTKLIFKTNDKASCRPSNVINYMKIHHG 180

Query: 75  INISYDKAWRGREKALNEIRGSPEQSYA 103
           +NISYDKAWRGRE ALN IR +PE SYA
Sbjct: 181 VNISYDKAWRGREIALNSIRDTPEDSYA 208

The following BLAST results are available for this feature:

BLAST of Lag0008776 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29863.1	1.7e-21	55.68	MuDRA-like transposase [Cucumis melo var. makuwa]	[more]
KAA0061274.1	2.2e-21	55.68	uncharacterized protein E6C27_scaffold455G001170 [Cucumis melo var. makuwa]	[more]
KAA0067552.1	4.9e-21	53.41	protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYJ97202.1 prot...	[more]
KAA0039579.1	1.4e-20	51.61	protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYK01721.1 prot...	[more]
KAA0047666.1	2.4e-20	53.41	MuDR family transposase [Cucumis melo var. makuwa]	[more]

BLAST of Lag0008776 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0008776.1	Lag0008776.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding