Lag0008770 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0008770
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr9: 29593202 .. 29594317 (+)
RNA-Seq ExpressionLag0008770
SyntenyLag0008770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAAGAGTTGTTTTCCTACCGAAGTGGTTGAAGATATTCTAAGTATCCCCCTTGGGAGGAGCCAATCCAAAGACGAAATTATTTGGGCAGAGCACCCCAAGGGAGCCTTCACAGTCAAATCCGCATACCATTTGGCTATGAATCTAGAGGATCTAAAGCAGGCTAGCAGCTCCGATAATTCCAACTTAAAGAGGCTGTGGAGGAATTTCTGGAACCTTAAAATCATCCCAAGAGTTAAAATTTGTGTGTGGAAATTGCTAAACAACATCATTCCAACGAAAGTGAATCTTTTATCGAAAGGCATTGATACTAACTTACTATGCCTGTTTTGCAGGTGCAAGGAGGAGTCTACAAGCCATCTAGTGTGGGAATGCAAGTTCTCCAAGTCTGTTTGGTTAAAATTTCTGCCTACCTTATCTAATTTTTTCAATGTTTGTAGGCCGAATTGGGATGCACTCACATTCTGGGAAGGGCTCATGGGTAGGCTCGGGGAGGAAGACACATGTGTCGCTGCGTTAATTCTATGGAAAGAAGCTAACCCAGACCAGAACCAAATCTCAAGATTTATTGAAGCTAGCATTTCTGAGCAACTCAAGGTTAGAGTTACTAACTTGGATGCTCGAAGGTCGAAGAATCAGCGGAGTCAGGCATCTTGGTCCCCCCCTCATCTGTTCCTGAAGTTGAACGTTGATGCTTCATGGACCAGCTCGGCGAACGTTGGGGGCGTTCGGTGGGTAGTGCGTGACTCCTCCGGGTCTTTGGTTATAGCCGGCTGCAAGAGGGAGGAGAGGAATTGGAGCATTCTCACGGCAGAAGCTTCTGCGATGCGAGAAGGCCTTTTCAACTTTCTGAAACATAGTGCATGGATCTCCACCCCGCTCATTGTGGAGTCTGATTCGAGCTCTTTGATTAAGATCCTGCAAGGGCTTGAGGTCGATCTCTCCGAGGTGAAGAACATTGTGGATGAGATCGAGGATATGGCGAGGGAGGTGACCGAAATTCAATTCGTTTGGTGTCCGAGGAGCTGCAATCAAATAACTCATGTTCTTGCTCAAAAGGCTGGAAGCGTAGGTTCGATGTGTTTTTCATCGAATGTGTTTTTCATCGAATGA

mRNA sequence

ATGATTAAGAGTTGTTTTCCTACCGAAGTGGTTGAAGATATTCTAAGTATCCCCCTTGGGAGGAGCCAATCCAAAGACGAAATTATTTGGGCAGAGCACCCCAAGGGAGCCTTCACAGTCAAATCCGCATACCATTTGGCTATGAATCTAGAGGATCTAAAGCAGGCTAGCAGCTCCGATAATTCCAACTTAAAGAGGCTGTGGAGGAATTTCTGGAACCTTAAAATCATCCCAAGAGTTAAAATTTGTGTGTGGAAATTGCTAAACAACATCATTCCAACGAAAGTGAATCTTTTATCGAAAGGCATTGATACTAACTTACTATGCCTGTTTTGCAGGTGCAAGGAGGAGTCTACAAGCCATCTAGTGTGGGAATGCAAGTTCTCCAAGTCTGTTTGGTTAAAATTTCTGCCTACCTTATCTAATTTTTTCAATGTTTGTAGGCCGAATTGGGATGCACTCACATTCTGGGAAGGGCTCATGGGTAGGCTCGGGGAGGAAGACACATGTGTCGCTGCGTTAATTCTATGGAAAGAAGCTAACCCAGACCAGAACCAAATCTCAAGATTTATTGAAGCTAGCATTTCTGAGCAACTCAAGGTTAGAGTTACTAACTTGGATGCTCGAAGGTCGAAGAATCAGCGGAGTCAGGCATCTTGGTCCCCCCCTCATCTGTTCCTGAAGTTGAACGTTGATGCTTCATGGACCAGCTCGGCGAACGTTGGGGGCGTTCGGTGGGTAGTGCGTGACTCCTCCGGGTCTTTGGTTATAGCCGGCTGCAAGAGGGAGGAGAGGAATTGGAGCATTCTCACGGCAGAAGCTTCTGCGATGCGAGAAGGCCTTTTCAACTTTCTGAAACATAGTGCATGGATCTCCACCCCGCTCATTGTGGAGTCTGATTCGAGCTCTTTGATTAAGATCCTGCAAGGGCTTGAGGTCGATCTCTCCGAGGTGAAGAACATTGTGGATGAGATCGAGGATATGGCGAGGGAGGTGACCGAAATTCAATTCGTTTGGTGTCCGAGGAGCTGCAATCAAATAACTCATGTTCTTGCTCAAAAGGCTGGAAGCGTAGGTTCGATGTGTTTTTCATCGAATGTGTTTTTCATCGAATGA

Coding sequence (CDS)

ATGATTAAGAGTTGTTTTCCTACCGAAGTGGTTGAAGATATTCTAAGTATCCCCCTTGGGAGGAGCCAATCCAAAGACGAAATTATTTGGGCAGAGCACCCCAAGGGAGCCTTCACAGTCAAATCCGCATACCATTTGGCTATGAATCTAGAGGATCTAAAGCAGGCTAGCAGCTCCGATAATTCCAACTTAAAGAGGCTGTGGAGGAATTTCTGGAACCTTAAAATCATCCCAAGAGTTAAAATTTGTGTGTGGAAATTGCTAAACAACATCATTCCAACGAAAGTGAATCTTTTATCGAAAGGCATTGATACTAACTTACTATGCCTGTTTTGCAGGTGCAAGGAGGAGTCTACAAGCCATCTAGTGTGGGAATGCAAGTTCTCCAAGTCTGTTTGGTTAAAATTTCTGCCTACCTTATCTAATTTTTTCAATGTTTGTAGGCCGAATTGGGATGCACTCACATTCTGGGAAGGGCTCATGGGTAGGCTCGGGGAGGAAGACACATGTGTCGCTGCGTTAATTCTATGGAAAGAAGCTAACCCAGACCAGAACCAAATCTCAAGATTTATTGAAGCTAGCATTTCTGAGCAACTCAAGGTTAGAGTTACTAACTTGGATGCTCGAAGGTCGAAGAATCAGCGGAGTCAGGCATCTTGGTCCCCCCCTCATCTGTTCCTGAAGTTGAACGTTGATGCTTCATGGACCAGCTCGGCGAACGTTGGGGGCGTTCGGTGGGTAGTGCGTGACTCCTCCGGGTCTTTGGTTATAGCCGGCTGCAAGAGGGAGGAGAGGAATTGGAGCATTCTCACGGCAGAAGCTTCTGCGATGCGAGAAGGCCTTTTCAACTTTCTGAAACATAGTGCATGGATCTCCACCCCGCTCATTGTGGAGTCTGATTCGAGCTCTTTGATTAAGATCCTGCAAGGGCTTGAGGTCGATCTCTCCGAGGTGAAGAACATTGTGGATGAGATCGAGGATATGGCGAGGGAGGTGACCGAAATTCAATTCGTTTGGTGTCCGAGGAGCTGCAATCAAATAACTCATGTTCTTGCTCAAAAGGCTGGAAGCGTAGGTTCGATGTGTTTTTCATCGAATGTGTTTTTCATCGAATGA

Protein sequence

MIKSCFPTEVVEDILSIPLGRSQSKDEIIWAEHPKGAFTVKSAYHLAMNLEDLKQASSSDNSNLKRLWRNFWNLKIIPRVKICVWKLLNNIIPTKVNLLSKGIDTNLLCLFCRCKEESTSHLVWECKFSKSVWLKFLPTLSNFFNVCRPNWDALTFWEGLMGRLGEEDTCVAALILWKEANPDQNQISRFIEASISEQLKVRVTNLDARRSKNQRSQASWSPPHLFLKLNVDASWTSSANVGGVRWVVRDSSGSLVIAGCKREERNWSILTAEASAMREGLFNFLKHSAWISTPLIVESDSSSLIKILQGLEVDLSEVKNIVDEIEDMAREVTEIQFVWCPRSCNQITHVLAQKAGSVGSMCFSSNVFFIE
Homology
BLAST of Lag0008770 vs. NCBI nr
Match: CAB4273082.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 166.0 bits (419), Expect = 6.1e-37
Identity = 113/399 (28.32%), Postives = 189/399 (47.37%), Query Frame = 0

Query: 1    MIKSCFPTEVVEDILSIPLGRSQSKDEIIWAEHPKGAFTVKSAYHLAMNLE------DLK 60
            ++  CF     + I +IP+ R    D+ +W     G +TV+S Y +A+ L          
Sbjct: 903  LVNRCFNPNEAKCISTIPISRWGCPDKKVWHYTSHGGYTVRSGYAVALTLRRNGELGRKA 962

Query: 61   QASSSDNSNLKRLWRNFWNLKIIPRVKICVWKLLNNIIPTKVNLLSKGIDTNLLCLFCRC 120
            +  SS     +R+W++ W L++ P+++  +WK   N++  K NLL +GID    C  C  
Sbjct: 963  EGESSQGDKQRRIWKSIWGLQVPPKIRTFLWKCCRNVLAVKENLLHRGIDVETSCALCGQ 1022

Query: 121  KEESTSHLVWECKFSKSVW------LKFLPTLSNFFNVCRPNWDALTFWEGLMGRLGEED 180
            + ES  H+ ++C+F++ +W      L     L   F VC         WE L+ +  + +
Sbjct: 1023 EGESQVHVFFKCEFARLLWFASPIQLDPCHILGEDFIVC---------WENLLKKYEQVE 1082

Query: 181  TC-----VAALILWK----------EANPDQNQISRFIEASISEQLKVRVTNLDARRSKN 240
             C     V A  LW+          E    +  ++  +E  + +  + R   +  +   N
Sbjct: 1083 HCNDILQVCAFGLWRIWKIRNGAVFEGTVIEPHVA--VECFLDQVHEFRTAQMHGKPLIN 1142

Query: 241  Q---------RSQASW-SPPHLFLKLNVDASWTSSANVGGVRWVVRDSSGSLVIAGCKRE 300
            +          +  SW  PP+  LK+N DA+W S   +GGV WVVRDS G +V AG K +
Sbjct: 1143 ELPRPPEVQAETVTSWRKPPYGVLKVNCDAAWVSQTQMGGVGWVVRDSDGWMVQAGGKGD 1202

Query: 301  ERNWSILTAEASAMREGLFNFLKHSAWISTPLIVESDSSSLIKILQG-LEVDLSEVKNIV 360
             R  S L  EA A+RE L   ++      + L VESDS  +I+++ G   +D++ V  IV
Sbjct: 1203 MRGGSALAMEAEAIREALVACVQSGL---SKLEVESDSLQVIRMIGGEWNMDIA-VDTIV 1262

Query: 361  DEIEDMAREVTEIQFVWCPRSCNQITHVLAQKAGSVGSM 362
             +I+ +  +     F++ PR+CN+  H +A     VG +
Sbjct: 1263 FDIKQLVGQFQHCVFLYTPRNCNKAAHKIAAFVSRVGGV 1286

BLAST of Lag0008770 vs. NCBI nr
Match: BBH00303.1 (Ribonuclease H-like superfamily protein [Prunus dulcis])

HSP 1 Score: 158.7 bits (400), Expect = 9.8e-35
Identity = 110/388 (28.35%), Postives = 182/388 (46.91%), Query Frame = 0

Query: 1   MIKSCFPTEVVEDILSIPLGRSQSKDEIIWAEHPKGAFTVKSAYHLAMNLEDLKQ----- 60
           +I   F    V  I S+P+ R    D ++W  H +GA+TV+S Y LA+ L+   +     
Sbjct: 198 LISQLFEPHEVRLITSMPISRWGCPDRLVWHFHKQGAYTVRSGYELALYLKRNGELGVKG 257

Query: 61  -ASSSDNSNLKRLWRNFWNLKIIPRVKICVWKLLNNIIPTKVNLLSKGIDTNLLCLFCRC 120
               S   N+  +W+  W L+I P+++  +WK   N +  + NL  + +  +  C FC  
Sbjct: 258 IGEGSGQHNMADVWKGIWRLRIPPKIRTFIWKACRNALAVRHNLKMRRVPVDNGCAFCAH 317

Query: 121 KEESTSHLVWECKFSKSVW----LKF-LPTLSNFFNVCRPNWDALTFWEGLMGRLGEEDT 180
           ++E+  HL + C F++++W    L+F + TL     + R  W  L  +    GR+ EE  
Sbjct: 318 EDETQEHLFFFCDFARAMWFASPLQFDVRTLGEGDFLAR--WKTLREFYDTRGRV-EEAL 377

Query: 181 CVAALILWKEANPDQNQISRFIEASISEQLKVRVTNLDARRSKNQR-------------- 240
            + A +LW+        +   +     + + + +T +D     N                
Sbjct: 378 QLVAFVLWRIWKCRNTLVFTGVRIQPCDAVALLLTQVDEFNVVNVATTVPAQQPGAPSDS 437

Query: 241 ---SQASW-SPPHLFLKLNVDASWTSSANVGGVRWVVRDSSGSLVIAGCKREERNWSILT 300
              +   W SPP   +KLN D +W +    GGV WV+RD  G  + AG   + R  S L 
Sbjct: 438 VGVASPGWSSPPPGLVKLNCDGAWVAQTGRGGVGWVLRDGIGCFISAGGCGDMRCTSALM 497

Query: 301 AEASAMREGLFNFLKHSAWISTPLIVESDSSSLIKILQGLEVDLSEVKNIVDEIEDMARE 360
           AEA A+RE L   L+        + VESDS SLIK+L   +V   E++ I+ ++  ++  
Sbjct: 498 AEAEAVREALTWCLELG---FDKVAVESDSLSLIKMLNKEDVVDLEIEGILFDVHCLSHR 557

BLAST of Lag0008770 vs. NCBI nr
Match: ABA98898.1 (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 158.7 bits (400), Expect = 9.8e-35
Identity = 105/376 (27.93%), Postives = 182/376 (48.40%), Query Frame = 0

Query: 12   EDILSIPLGRSQSKDEIIWAEHPKGAFTVKSAYHLAMNLEDLKQASSSDNSNLKRLWRNF 71
            E I SI L   Q +D I W     G F+++SAY LA+ L +  ++SSS  ++ K++W + 
Sbjct: 799  EIIKSIRLSSRQDEDFIAWYPDKMGQFSIRSAYMLAVQLANAGESSSSSGNDTKKVWNHV 858

Query: 72   WNLKIIPRVKICVWKLLNNIIPTKVNLLSKGIDTNLLCLFCRCKEESTSHLVWECKFSKS 131
            W   I  +VK+  W+ ++N +PT VN   +  + + +C FC  + E  +H +W C  ++ 
Sbjct: 859  WKCNIPQKVKVFSWRAISNCLPTMVNKKKRNPELSDVCSFCGLEPEDVAHALWRCPHARR 918

Query: 132  VWLKFLPTLSNFFNVCRPNWDALTFWEGLMGRLGEEDTCVAALILWK-----------EA 191
             W   + +      +   + +   +    +  + E+D  V  + LW+           +A
Sbjct: 919  YW-DLMSSEMQVQRILYGSGEGSDWILDFLESISEDDRPVFLMSLWRIWYTRNEITHDKA 978

Query: 192  NPDQNQISRFIEASIS--EQLKVR----------VTNLDARRSKNQRSQASW-SPPHLFL 251
             P      RF+ + ++  +++K R          V   D  + K Q   A W  PP  ++
Sbjct: 979  APPVEVSKRFVRSYVNSLKEIKARPNANLGSGKHVIGEDRPKCKKQSVLAKWEKPPSGWM 1038

Query: 252  KLNVDASWTSSANVGGVRWVVRDSSGSLVIAGCKREERNWSILTAEASAMREGLFNFLKH 311
            KLNVD S+    N+G +  ++R+S+G ++ A C   E+  S L AE  A +EG+   L+ 
Sbjct: 1039 KLNVDGSYQED-NIGEISAILRNSTGDVIFAACGFVEQCQSALEAEILACKEGIGLALQ- 1098

Query: 312  SAWISTPLIVESDSSSLIKILQGLEVDLSEVKNIVDEIEDMAREVTEIQFVWCPRSCNQI 364
              W   P+I+ESD +  ++++       S  K +V EI+ M +   E++     R+CN I
Sbjct: 1099 --WTLLPIIIESDCAEALQLILSEGKLRSVNKFLVREIQGMVKGAREMKLKKVNRNCNHI 1158

BLAST of Lag0008770 vs. NCBI nr
Match: CAB4303756.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 157.5 bits (397), Expect = 2.2e-34
Identity = 107/377 (28.38%), Postives = 183/377 (48.54%), Query Frame = 0

Query: 1   MIKSCFPTEVVEDILSIPLGRSQSKDEIIWAEHPKGAFTVKSAYHLAMNLEDLKQ----- 60
           +I  CF  E    ILSIP+ R    D++IW     G +TV+S Y LA++L+   +     
Sbjct: 557 VINRCFVPEEASHILSIPISRWGCPDKLIWHFSMHGRYTVRSGYELALHLQRNGELGRKG 616

Query: 61  -ASSSDNSNLKRLWRNFWNLKIIPRVKICVWKLLNNIIPTKVNLLSKGIDTNLLCLFCRC 120
              +S +S+   +W++ W++   P++K  +W+  +NI+  + NL  + +     C FC  
Sbjct: 617 AGEASSSSSQSSVWKSVWHVDAPPKLKAFIWRGCSNILAVRHNLRRRRVPYTGECGFCGF 676

Query: 121 KEESTSHLVWECKFSKSVWLKFLPTLSNFFNVCR-PNWDALTFWEGLMGRLGEEDTCVAA 180
           ++E+ +H+ +EC F+++ W  F   L    +V +    D ++ W+ +M  L   +    A
Sbjct: 677 QDETQAHIFFECDFARAFW--FASPLQ--LDVSKLAGEDFISTWQHMMTTLNSSEHAAEA 736

Query: 181 LI-----LWKEANPDQNQISRFIEASISEQLKVRVTNLDARRSKNQRSQ----------- 240
           +      LW+        +   ++A  +E + + +  +   R+  Q  Q           
Sbjct: 737 IQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLLLKQVSEFRTAKQDLQPQPLQPVSSPA 796

Query: 241 -ASW-SPPHLFLKLNVDASWTSSANVGGVRWVVRDSSGSLVIAGCKREERNWSILTAEAS 300
             SW  PP   LK+N DA+W++    GGV WV+RDS G L+ AG + +    S +  E  
Sbjct: 797 PLSWCKPPPGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMMELL 856

Query: 301 AMREGLFNFLKHSAWISTPLIVESDSSSLIKILQGLEVDLSEVKNIVDEIEDMAREVTEI 353
           A+R  L           T +IVESDS   I +L G     S+++ IV +I  +   ++ +
Sbjct: 857 AIRHALSECANFHL---TDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLSRV 916

BLAST of Lag0008770 vs. NCBI nr
Match: CAB4274760.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 156.8 bits (395), Expect = 3.7e-34
Identity = 111/387 (28.68%), Postives = 187/387 (48.32%), Query Frame = 0

Query: 1    MIKSCFPTEVVEDILSIPLGRSQSKDEIIWAEHPKGAFTVKSAYHLAMNLEDLKQ----- 60
            ++  CF  E    ILSIP+ R    D++IW  +  G +TV+S Y LA++L+   +     
Sbjct: 885  VVNRCFVPEEATHILSIPISRWGCPDKLIWHFNMHGRYTVRSGYELALHLQRNGELGRKG 944

Query: 61   -ASSSDNSNLKRLWRNFWNLKIIPRVKICVWKLLNNIIPTKVNLLSKGIDTNLLCLFCRC 120
               +S +S+   +W++ W++   P++K  +W   +NI+  + NL  + +     C FC  
Sbjct: 945  AGEASSSSSQSSVWKSVWHVDAPPKLKAFIWCGCSNILAVRHNLHRRRVPCTGECGFCGF 1004

Query: 121  KEESTSHLVWECKFSKSVWLKFLPTLSNFFNVCR-PNWDALTFWEGLMGRLGEEDTCVAA 180
            ++E+ +H+ +EC F+++ W  F   L    +V +    D ++ W+ +M  L   +    A
Sbjct: 1005 QDETQAHIFFECDFARAFW--FASPLQ--LDVSKLAGEDFISTWQHMMTTLNSSEHAAEA 1064

Query: 181  L--------ILWKEAN--------PDQNQISRFIEASISE--QLKVRVTNLDARRSKNQR 240
            +         +WK  N         D  ++   +   +SE    K  + +L  +  +   
Sbjct: 1065 IQWFVFGLWRIWKARNLAVFDGVQADPTEVVLLLLKQVSEFRTAKHDLQDLQPQPLQPAS 1124

Query: 241  SQA--SWSPPHL-FLKLNVDASWTSSANVGGVRWVVRDSSGSLVIAGCKREERNWSILTA 300
            S A  SW  P L  LK+N DA+W++    GGV WV+RDS G L+ AG + +    S +  
Sbjct: 1125 SPAPLSWCKPSLGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMM 1184

Query: 301  EASAMREGLFNFLKHSAWISTPLIVESDSSSLIKILQGLEVDLSEVKNIVDEIEDMAREV 360
            E  A+R  L           T +IVESDS   I +L G     S+++ IV +I  +   +
Sbjct: 1185 ELLAIRHALSECANFHL---TDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASL 1244

BLAST of Lag0008770 vs. ExPASy TrEMBL
Match: A0A6J5UAY2 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20161 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.0e-37
Identity = 113/399 (28.32%), Postives = 189/399 (47.37%), Query Frame = 0

Query: 1    MIKSCFPTEVVEDILSIPLGRSQSKDEIIWAEHPKGAFTVKSAYHLAMNLE------DLK 60
            ++  CF     + I +IP+ R    D+ +W     G +TV+S Y +A+ L          
Sbjct: 903  LVNRCFNPNEAKCISTIPISRWGCPDKKVWHYTSHGGYTVRSGYAVALTLRRNGELGRKA 962

Query: 61   QASSSDNSNLKRLWRNFWNLKIIPRVKICVWKLLNNIIPTKVNLLSKGIDTNLLCLFCRC 120
            +  SS     +R+W++ W L++ P+++  +WK   N++  K NLL +GID    C  C  
Sbjct: 963  EGESSQGDKQRRIWKSIWGLQVPPKIRTFLWKCCRNVLAVKENLLHRGIDVETSCALCGQ 1022

Query: 121  KEESTSHLVWECKFSKSVW------LKFLPTLSNFFNVCRPNWDALTFWEGLMGRLGEED 180
            + ES  H+ ++C+F++ +W      L     L   F VC         WE L+ +  + +
Sbjct: 1023 EGESQVHVFFKCEFARLLWFASPIQLDPCHILGEDFIVC---------WENLLKKYEQVE 1082

Query: 181  TC-----VAALILWK----------EANPDQNQISRFIEASISEQLKVRVTNLDARRSKN 240
             C     V A  LW+          E    +  ++  +E  + +  + R   +  +   N
Sbjct: 1083 HCNDILQVCAFGLWRIWKIRNGAVFEGTVIEPHVA--VECFLDQVHEFRTAQMHGKPLIN 1142

Query: 241  Q---------RSQASW-SPPHLFLKLNVDASWTSSANVGGVRWVVRDSSGSLVIAGCKRE 300
            +          +  SW  PP+  LK+N DA+W S   +GGV WVVRDS G +V AG K +
Sbjct: 1143 ELPRPPEVQAETVTSWRKPPYGVLKVNCDAAWVSQTQMGGVGWVVRDSDGWMVQAGGKGD 1202

Query: 301  ERNWSILTAEASAMREGLFNFLKHSAWISTPLIVESDSSSLIKILQG-LEVDLSEVKNIV 360
             R  S L  EA A+RE L   ++      + L VESDS  +I+++ G   +D++ V  IV
Sbjct: 1203 MRGGSALAMEAEAIREALVACVQSGL---SKLEVESDSLQVIRMIGGEWNMDIA-VDTIV 1262

Query: 361  DEIEDMAREVTEIQFVWCPRSCNQITHVLAQKAGSVGSM 362
             +I+ +  +     F++ PR+CN+  H +A     VG +
Sbjct: 1263 FDIKQLVGQFQHCVFLYTPRNCNKAAHKIAAFVSRVGGV 1286

BLAST of Lag0008770 vs. ExPASy TrEMBL
Match: A0A2N9HW96 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44504 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.1e-35
Identity = 123/395 (31.14%), Postives = 186/395 (47.09%), Query Frame = 0

Query: 1   MIKSCFPTEVVEDILSIPLGRSQSKDEIIWAEHPKGAFTVKSAYHLAMNLEDLKQASSSD 60
           +I + F     + I SIPL R  S D IIW+E   G ++V+SAYHL M  +  K   SS+
Sbjct: 417 LIDAIFEVSEADTIKSIPLSRRSSTDTIIWSETKNGVYSVRSAYHLLMKAK--KGGESSN 476

Query: 61  NSNLKRLWRNFWNLKIIPRVKICVWKLLNNIIPTKVNLLSKGIDTNLLCLFCRCKEESTS 120
           NS +  LW+  WN  +  ++K+ +WK   NI+PTK+NL  K    ++ C  C    ES  
Sbjct: 477 NSQVNNLWKGIWNASVPQKIKLFIWKACKNILPTKLNLFRKKACNSMSCDLCDNDLESVM 536

Query: 121 HLVWECKFSKSVW-LKFL------PTLSNFFNVCRPNWDALTFWEGLMGRLGEEDTCVAA 180
           H++ +CKF++ VW L  L      P   NF +       +LT            D  +  
Sbjct: 537 HVLVDCKFAQEVWGLSVLASTQKWPHSHNFADFVHHGIQSLT----------SPDIELLF 596

Query: 181 LILWK--EANPDQNQISRFIEAS---------ISEQLKVRVTNLDARRSKNQRSQASWSP 240
            I WK   A  D+   ++F+ A          +S+ L    T+ D    +  R    W+P
Sbjct: 597 TIAWKLWVARNDRMWDNQFVAARDIIYRAGSLVSDFLYQEQTSHD----QITRVLCKWNP 656

Query: 241 P-HLFLKLNVDASWTSSANVGGVRWVVRDSSGSLVIAGCKREERNWSILTAEASAMREGL 300
           P     K+NV   W S  + GG   V+RDSSGS++ A C    +    L   A A+++ L
Sbjct: 657 PSDSVYKINVAVQWRSLTSSGGFGIVIRDSSGSVIAAMCDTSSQLGDELQLFAFAIQKSL 716

Query: 301 FNFLKHSAWIST-----PLIVESDSSSLIKILQGLEVDLSEVKNIVDEIEDMAREVTEIQ 360
                   W++       LIVE D S+L+  L+     L+    +VDEI++++       
Sbjct: 717 --------WLAKEMDCHSLIVEGDCSALLGSLKTPGPCLAYYGTLVDEIKELSSLFLHTI 776

Query: 361 FVWCPRSCNQITHVLAQKAGSVGS--MCFSSNVFF 370
           F   PRSCN ++  LA+++ S  S  M  S N F+
Sbjct: 777 FNTIPRSCNLVSFSLAKESFSFSSCTMVHSRNPFY 787

BLAST of Lag0008770 vs. ExPASy TrEMBL
Match: A0A4Y1R838 (Ribonuclease H-like superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_010255 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.7e-35
Identity = 110/388 (28.35%), Postives = 182/388 (46.91%), Query Frame = 0

Query: 1   MIKSCFPTEVVEDILSIPLGRSQSKDEIIWAEHPKGAFTVKSAYHLAMNLEDLKQ----- 60
           +I   F    V  I S+P+ R    D ++W  H +GA+TV+S Y LA+ L+   +     
Sbjct: 198 LISQLFEPHEVRLITSMPISRWGCPDRLVWHFHKQGAYTVRSGYELALYLKRNGELGVKG 257

Query: 61  -ASSSDNSNLKRLWRNFWNLKIIPRVKICVWKLLNNIIPTKVNLLSKGIDTNLLCLFCRC 120
               S   N+  +W+  W L+I P+++  +WK   N +  + NL  + +  +  C FC  
Sbjct: 258 IGEGSGQHNMADVWKGIWRLRIPPKIRTFIWKACRNALAVRHNLKMRRVPVDNGCAFCAH 317

Query: 121 KEESTSHLVWECKFSKSVW----LKF-LPTLSNFFNVCRPNWDALTFWEGLMGRLGEEDT 180
           ++E+  HL + C F++++W    L+F + TL     + R  W  L  +    GR+ EE  
Sbjct: 318 EDETQEHLFFFCDFARAMWFASPLQFDVRTLGEGDFLAR--WKTLREFYDTRGRV-EEAL 377

Query: 181 CVAALILWKEANPDQNQISRFIEASISEQLKVRVTNLDARRSKNQR-------------- 240
            + A +LW+        +   +     + + + +T +D     N                
Sbjct: 378 QLVAFVLWRIWKCRNTLVFTGVRIQPCDAVALLLTQVDEFNVVNVATTVPAQQPGAPSDS 437

Query: 241 ---SQASW-SPPHLFLKLNVDASWTSSANVGGVRWVVRDSSGSLVIAGCKREERNWSILT 300
              +   W SPP   +KLN D +W +    GGV WV+RD  G  + AG   + R  S L 
Sbjct: 438 VGVASPGWSSPPPGLVKLNCDGAWVAQTGRGGVGWVLRDGIGCFISAGGCGDMRCTSALM 497

Query: 301 AEASAMREGLFNFLKHSAWISTPLIVESDSSSLIKILQGLEVDLSEVKNIVDEIEDMARE 360
           AEA A+RE L   L+        + VESDS SLIK+L   +V   E++ I+ ++  ++  
Sbjct: 498 AEAEAVREALTWCLELG---FDKVAVESDSLSLIKMLNKEDVVDLEIEGILFDVHCLSHR 557

BLAST of Lag0008770 vs. ExPASy TrEMBL
Match: Q2QNX8 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g36390 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.7e-35
Identity = 105/376 (27.93%), Postives = 182/376 (48.40%), Query Frame = 0

Query: 12   EDILSIPLGRSQSKDEIIWAEHPKGAFTVKSAYHLAMNLEDLKQASSSDNSNLKRLWRNF 71
            E I SI L   Q +D I W     G F+++SAY LA+ L +  ++SSS  ++ K++W + 
Sbjct: 799  EIIKSIRLSSRQDEDFIAWYPDKMGQFSIRSAYMLAVQLANAGESSSSSGNDTKKVWNHV 858

Query: 72   WNLKIIPRVKICVWKLLNNIIPTKVNLLSKGIDTNLLCLFCRCKEESTSHLVWECKFSKS 131
            W   I  +VK+  W+ ++N +PT VN   +  + + +C FC  + E  +H +W C  ++ 
Sbjct: 859  WKCNIPQKVKVFSWRAISNCLPTMVNKKKRNPELSDVCSFCGLEPEDVAHALWRCPHARR 918

Query: 132  VWLKFLPTLSNFFNVCRPNWDALTFWEGLMGRLGEEDTCVAALILWK-----------EA 191
             W   + +      +   + +   +    +  + E+D  V  + LW+           +A
Sbjct: 919  YW-DLMSSEMQVQRILYGSGEGSDWILDFLESISEDDRPVFLMSLWRIWYTRNEITHDKA 978

Query: 192  NPDQNQISRFIEASIS--EQLKVR----------VTNLDARRSKNQRSQASW-SPPHLFL 251
             P      RF+ + ++  +++K R          V   D  + K Q   A W  PP  ++
Sbjct: 979  APPVEVSKRFVRSYVNSLKEIKARPNANLGSGKHVIGEDRPKCKKQSVLAKWEKPPSGWM 1038

Query: 252  KLNVDASWTSSANVGGVRWVVRDSSGSLVIAGCKREERNWSILTAEASAMREGLFNFLKH 311
            KLNVD S+    N+G +  ++R+S+G ++ A C   E+  S L AE  A +EG+   L+ 
Sbjct: 1039 KLNVDGSYQED-NIGEISAILRNSTGDVIFAACGFVEQCQSALEAEILACKEGIGLALQ- 1098

Query: 312  SAWISTPLIVESDSSSLIKILQGLEVDLSEVKNIVDEIEDMAREVTEIQFVWCPRSCNQI 364
              W   P+I+ESD +  ++++       S  K +V EI+ M +   E++     R+CN I
Sbjct: 1099 --WTLLPIIIESDCAEALQLILSEGKLRSVNKFLVREIQGMVKGAREMKLKKVNRNCNHI 1158

BLAST of Lag0008770 vs. ExPASy TrEMBL
Match: A0A6J5WPU6 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS20372 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-34
Identity = 107/377 (28.38%), Postives = 183/377 (48.54%), Query Frame = 0

Query: 1   MIKSCFPTEVVEDILSIPLGRSQSKDEIIWAEHPKGAFTVKSAYHLAMNLEDLKQ----- 60
           +I  CF  E    ILSIP+ R    D++IW     G +TV+S Y LA++L+   +     
Sbjct: 557 VINRCFVPEEASHILSIPISRWGCPDKLIWHFSMHGRYTVRSGYELALHLQRNGELGRKG 616

Query: 61  -ASSSDNSNLKRLWRNFWNLKIIPRVKICVWKLLNNIIPTKVNLLSKGIDTNLLCLFCRC 120
              +S +S+   +W++ W++   P++K  +W+  +NI+  + NL  + +     C FC  
Sbjct: 617 AGEASSSSSQSSVWKSVWHVDAPPKLKAFIWRGCSNILAVRHNLRRRRVPYTGECGFCGF 676

Query: 121 KEESTSHLVWECKFSKSVWLKFLPTLSNFFNVCR-PNWDALTFWEGLMGRLGEEDTCVAA 180
           ++E+ +H+ +EC F+++ W  F   L    +V +    D ++ W+ +M  L   +    A
Sbjct: 677 QDETQAHIFFECDFARAFW--FASPLQ--LDVSKLAGEDFISTWQHMMTTLNSSEHAAEA 736

Query: 181 LI-----LWKEANPDQNQISRFIEASISEQLKVRVTNLDARRSKNQRSQ----------- 240
           +      LW+        +   ++A  +E + + +  +   R+  Q  Q           
Sbjct: 737 IQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLLLKQVSEFRTAKQDLQPQPLQPVSSPA 796

Query: 241 -ASW-SPPHLFLKLNVDASWTSSANVGGVRWVVRDSSGSLVIAGCKREERNWSILTAEAS 300
             SW  PP   LK+N DA+W++    GGV WV+RDS G L+ AG + +    S +  E  
Sbjct: 797 PLSWCKPPPGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMMELL 856

Query: 301 AMREGLFNFLKHSAWISTPLIVESDSSSLIKILQGLEVDLSEVKNIVDEIEDMAREVTEI 353
           A+R  L           T +IVESDS   I +L G     S+++ IV +I  +   ++ +
Sbjct: 857 AIRHALSECANFHL---TDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLSRV 916

BLAST of Lag0008770 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 113.6 bits (283), Expect = 3.4e-25
Identity = 91/377 (24.14%), Postives = 174/377 (46.15%), Query Frame = 0

Query: 1   MIKSCFPTEVVEDILSIPLGRSQSKDEIIWAEHPKGAFTVKSAYHLAMNLEDLKQASSSD 60
           +I+  FP    + I  +  G  +  D   W     G +TVKS Y +   + + K++S  +
Sbjct: 186 VIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIIN-KRSSPQE 245

Query: 61  NS--NLKRLWRNFWNLKIIPRVKICVWKLLNNIIPTKVNLLSKGIDTNLLCLFCRCKEES 120
            S  +L  +++  W  +  P+++  +WK L+N +P    L  + +     C+ C   +E+
Sbjct: 246 VSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKET 305

Query: 121 TSHLVWECKFSKSVWLKFLPTLSNFFNVCRPNW-DAL---TFWEGLMGRLGEEDTCVAAL 180
            +HL+++C F++  W      +S+        W D++    +W   +G    +    + L
Sbjct: 306 VNHLLFKCTFARLTW-----AISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQL 365

Query: 181 I------LWKEANP--------DQNQISRFIEASISE-QLKVRVTNLDARRSKNQRSQAS 240
           +      LWK  N         +  ++ R  E  + E +++    +   +   N+ S   
Sbjct: 366 VPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGR 425

Query: 241 W-SPPHLFLKLNVDASWTSSANVGGVRWVVRDSSGSLVIAGCKREERNWSILTAEASAMR 300
           W  PPH ++K N DA+W       G+ WV+R+  G +   G +   +  S+L AE  AMR
Sbjct: 426 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMR 485

Query: 301 EGLFNFLKHSAWISTPLIVESDSSSLIKILQGLEVDLSEVKNIVDEIEDMAREVTEIQFV 356
              +  L  S +    +I ESDS  LI+IL   E+    +K  + +++ +  + TE++FV
Sbjct: 486 ---WAVLSLSRFQYNYVIFESDSQVLIEILNNDEI-WPSLKPTIQDLQRLLSQFTEVKFV 545

BLAST of Lag0008770 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 95.9 bits (237), Expect = 7.3e-20
Identity = 90/374 (24.06%), Postives = 164/374 (43.85%), Query Frame = 0

Query: 17  IPLGRSQSKDEIIWAEHPKGAFTVKSAYHLAMNLEDLKQASSSDNSNLKRLWRNFWNLKI 76
           I L +S+  D+IIW  +  G +TV+S Y L  +       + +       L    WNL I
Sbjct: 108 IYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPI 167

Query: 77  IPRVKICVWKLLNNIIPTKVNLLSKGIDTNLLCLFCRCKEESTSHLVWECKFSKSVWLKF 136
           +P++K  +W+ L+  + T   L ++G+  +  C  C  + ES +H ++ C F+   W   
Sbjct: 168 MPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAW--- 227

Query: 137 LPTLSNFFNVCRPNWDALTFWEGLMGRLG-EEDTCVA-------ALILWKEANPDQNQI- 196
              LS+  ++ R    +  F E +   L   +DT ++         ++W+      N + 
Sbjct: 228 --RLSD-SSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVF 287

Query: 197 SRFIEASISEQLKVRVTN---LDARRSKNQ---------RSQASW-SPPHLFLKLNVDAS 256
           ++F E+     L  +      L+A +S  +          ++  W +PP  ++K N DA 
Sbjct: 288 NKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAG 347

Query: 257 WTSSANVGGVRWVVRDSSGSLVIAGCKREERNWSILTAEASAMREGLFNFLKHSAWIS-- 316
           +          W++R+  G+ +  G  +     + L AE  A+   L        WI   
Sbjct: 348 FDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAAL-----QQTWIRGY 407

Query: 317 TPLIVESDSSSLIKILQGLEVDLSEVKNIVDEIEDMAREVTEIQFVWCPRSCNQITHVLA 367
           T + +E D  +LI ++ G+    S + N +++I   A +   IQF +  R  N++ HVLA
Sbjct: 408 TQVFMEGDCQTLINLINGISFH-SSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLA 467

BLAST of Lag0008770 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-14
Identity = 73/346 (21.10%), Postives = 139/346 (40.17%), Query Frame = 0

Query: 40  VKSAYHLAMNLEDLKQASSSDNSNLKRLWRNFWNLKIIPRVKICVWKLLNNIIPTKVNLL 99
           ++S Y +A + + L++ +         + +  W L + P++K  +W+ +   + T   L 
Sbjct: 6   LRSGYWVATHEDLLEEEAIQPPPGSTEVKQAIWKLHVAPKIKHFLWRCVTGALATNTRLR 65

Query: 100 SKGIDTNLLCLFCRCKEESTSHLVWECKFSKSVWLKFLPTLSNFFNVCRPNWDALTFWEG 159
           S+ ID + +C  C  +EE+  H+++ C +++SVW      + N        W   + +E 
Sbjct: 66  SRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGN-------QWGPPSSFED 125

Query: 160 LMGRL---------GEEDTCVAALILWK-------------------EANPDQNQISRFI 219
            + RL            D  +   I+W+                   EA       + ++
Sbjct: 126 NLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFLFQQKCQSPDYEARKGIQDATEWL 185

Query: 220 EAS-ISEQLKVRVTNLDARRSKNQRSQASWS-PPHLFLKLNVDASWTSSANVGGVRWVVR 279
            A+  +E   V V     + S+   SQ  W+ PP  ++K N D+ +T  +      W +R
Sbjct: 186 NANETTENTNVHVATNPIQTSRRDSSQ--WNPPPEGWVKCNFDSGYTQGSPYTRSGWTIR 245

Query: 280 DSSGSLVIAGCKREERNWSILTAEASAMREGLFNFLKHS---AWISTPLIVESDSSSLIK 339
           + +G +V+ G  + + +   L AEA      L     H     W       ESDS SL+ 
Sbjct: 246 ECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIWAHGLRYVWF------ESDSKSLVT 305

Query: 340 ILQGLEVDLSEVKNIVDEIEDMAREVTEIQFVWCPRSCNQITHVLA 353
           ++   E D S +  ++ +I     ++      +  R  N     LA
Sbjct: 306 LINNGE-DHSLLGTLIYDIRHWMLKLPYCSLEFVNRERNSAADALA 335

BLAST of Lag0008770 vs. TAIR 10
Match: AT4G09775.1 (BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-07
Identity = 27/99 (27.27%), Postives = 52/99 (52.53%), Query Frame = 0

Query: 177 WKEANPDQNQISRFIEASISEQLKVRVTNLDARRSKNQRSQASWS-PPHLFLKLNVDASW 236
           WK A   + + + ++E +I++      T     R   +  +  WS PP  +LK N D+ +
Sbjct: 21  WKVAQKGEQEATEWVETTINDTANSHSTEQPNDRPSGRSKE--WSPPPEGYLKCNFDSGY 80

Query: 237 TSSANVGGVRWVVRDSSGSLVIAGCKREERNWSILTAEA 275
               +     W++RDS+G ++ +GC + ++++S L AEA
Sbjct: 81  VQGRDYTSTCWIIRDSNGHVIHSGCAKLQQSYSALQAEA 117

BLAST of Lag0008770 vs. TAIR 10
Match: AT3G26855.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-07
Identity = 23/61 (37.70%), Postives = 38/61 (62.30%), Query Frame = 0

Query: 70  NFWNLKIIPRVKICVWKLLNNIIPTKVNLLSKGIDTNLLCLFCRCKEESTSHLVWECKFS 129
           + W+LKI P++K+ +WK LNN +P    LLS+ I     C  CR   E+ +H+++ C F+
Sbjct: 8   DIWSLKISPKIKLLIWKALNNALPVGAQLLSRNISIEPFCTRCR-DFETITHILFNCPFA 67

Query: 130 K 131
           +
Sbjct: 68  Q 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAB4273082.16.1e-3728.32unnamed protein product [Prunus armeniaca][more]
BBH00303.19.8e-3528.35Ribonuclease H-like superfamily protein [Prunus dulcis][more]
ABA98898.19.8e-3527.93retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group][more]
CAB4303756.12.2e-3428.38unnamed protein product [Prunus armeniaca][more]
CAB4274760.13.7e-3428.68unnamed protein product [Prunus armeniaca][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J5UAY23.0e-3728.32Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=... [more]
A0A2N9HW962.1e-3531.14Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A4Y1R8384.7e-3528.35Ribonuclease H-like superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_010255... [more]
Q2QNX84.7e-3527.93Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... [more]
A0A6J5WPU61.1e-3428.38Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=... [more]
Match NameE-valueIdentityDescription
AT4G29090.13.4e-2524.14Ribonuclease H-like superfamily protein [more]
AT3G09510.17.3e-2024.06Ribonuclease H-like superfamily protein [more]
AT2G02650.12.0e-1421.10Ribonuclease H-like superfamily protein [more]
AT4G09775.11.1e-0727.27BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily prot... [more]
AT3G26855.11.4e-0737.70RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 308..328
NoneNo IPR availablePANTHERPTHR46736FAMILY NOT NAMEDcoord: 3..287
NoneNo IPR availablePANTHERPTHR46736:SF6SUBFAMILY NOT NAMEDcoord: 3..287
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 227..358
e-value: 3.3E-14
score: 55.0
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 230..355
e-value: 5.0E-24
score: 84.5
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 38..133
e-value: 1.4E-17
score: 64.2
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 229..352
e-value: 6.42837E-18
score: 76.9692
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 227..356

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0008770.1Lag0008770.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity