Lag0008737 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0008737
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr9: 28994454 .. 28994894 (-)
RNA-Seq ExpressionLag0008737
SyntenyLag0008737
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCCGAAGGAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTACTATGTGGGGACAATTACGCGTAGTCGCTCCAAGGAAACCGAACACGAAGACAACCAAACTCTTGACATCGCAAACAAGATGCTGAGACGCATGGCAGAATCTTCTCAACTTGAAATCGCCATTACAGAAAATCTGATGCTTGGCAAATCCACCTCTCCTTTTCAACAACCAAACGAAACAACAAGTCCTGATGTGATGTCTGTTATGATGACTAATGCAGGAACTAGTGAAGAACGTATGGCTGAAGTTGAGAAGAAAATCAACATGTTACTGAAGATGGTTGAAGATAAAAACTACGAAATTGCCTCTCTCAAAAGCCAGATGGAGAGTCGGGATGCCACTGAATCAATTCACACCCTTACCATCAAAGACAAGGGAAAGACCACTATATAA

mRNA sequence

ATGACTTCCGAAGGAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTACTATGTGGGGACAATTACGCGTAGTCGCTCCAAGGAAACCGAACACGAAGACAACCAAACTCTTGACATCGCAAACAAGATGCTGAGACGCATGGCAGAATCTTCTCAACTTGAAATCGCCATTACAGAAAATCTGATGCTTGGCAAATCCACCTCTCCTTTTCAACAACCAAACGAAACAACAAGTCCTGATGTGATGTCTGTTATGATGACTAATGCAGGAACTAGTGAAGAACGTATGGCTGAAGTTGAGAAGAAAATCAACATGTTACTGAAGATGGTTGAAGATAAAAACTACGAAATTGCCTCTCTCAAAAGCCAGATGGAGAGTCGGGATGCCACTGAATCAATTCACACCCTTACCATCAAAGACAAGGGAAAGACCACTATATAA

Coding sequence (CDS)

ATGACTTCCGAAGGAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTACTATGTGGGGACAATTACGCGTAGTCGCTCCAAGGAAACCGAACACGAAGACAACCAAACTCTTGACATCGCAAACAAGATGCTGAGACGCATGGCAGAATCTTCTCAACTTGAAATCGCCATTACAGAAAATCTGATGCTTGGCAAATCCACCTCTCCTTTTCAACAACCAAACGAAACAACAAGTCCTGATGTGATGTCTGTTATGATGACTAATGCAGGAACTAGTGAAGAACGTATGGCTGAAGTTGAGAAGAAAATCAACATGTTACTGAAGATGGTTGAAGATAAAAACTACGAAATTGCCTCTCTCAAAAGCCAGATGGAGAGTCGGGATGCCACTGAATCAATTCACACCCTTACCATCAAAGACAAGGGAAAGACCACTATATAA

Protein sequence

MTSEGASSKIAASSNYYVGTITRSRSKETEHEDNQTLDIANKMLRRMAESSQLEIAITENLMLGKSTSPFQQPNETTSPDVMSVMMTNAGTSEERMAEVEKKINMLLKMVEDKNYEIASLKSQMESRDATESIHTLTIKDKGKTTI
Homology
BLAST of Lag0008737 vs. NCBI nr
Match: KAA0035918.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19070.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-18
Identity = 68/150 (45.33%), Postives = 101/150 (67.33%), Query Frame = 0

Query: 1   MTSEGASSKIAASSNYYVGTITRSRSKETE-HEDNQTLDIANKMLRRMAESSQLEIAITE 60
           MTS+G +SK  A S+  +   T SRS+ET+ +ED    D+A  + +++++  +  I I E
Sbjct: 1   MTSQGNTSK--AMSDISMWPNTHSRSRETQSYEDMSPSDVAKIIWKQLSKPPKCGIIIKE 60

Query: 61  NLMLGK-STSPFQQPNETTSPDVMSVMMTNAGTSEERMAEVEKKINMLLKMVEDKNYEIA 120
           N M+ + ++S      E   P++MSVM+TN  TSE RM E+ KK+NML+K+VE+++YEIA
Sbjct: 61  NPMIDEHNSSSKHSSEEMPHPNIMSVMVTNMDTSENRMVELNKKVNMLMKVVEERDYEIA 120

Query: 121 SLKSQMESRDATESIHTLTIK--DKGKTTI 147
           SLK+ +ES DA ES HT T+K  DKGKT +
Sbjct: 121 SLKNHIESHDAAESSHTQTVKNTDKGKTVM 148

BLAST of Lag0008737 vs. NCBI nr
Match: KAA0056609.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK24292.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 7.3e-18
Identity = 65/147 (44.22%), Postives = 99/147 (67.35%), Query Frame = 0

Query: 1   MTSEGASSKIAASSNYYVGTITRSRSKETEHEDNQTL---DIANKMLRRMAESSQLEIAI 60
           MTS+G +SK  A S+ Y  + TRSRS+ET+  ++  +   ++A     ++++  +  I  
Sbjct: 1   MTSKGNTSK--ALSDIYKRSNTRSRSRETQSYEDMHMPPFEVAKNACEQLSKPPKSGIIF 60

Query: 61  TENLMLGKSTSPFQQPNETTS-PDVMSVMMTNAGTSEERMAEVEKKINMLLKMVEDKNYE 120
            ENL++ +  S  +  +E  S P++MSVM+    TSE++M+E+EKKINML+K +E K+YE
Sbjct: 61  KENLLINQHNSSSEHSSEEMSYPNIMSVMVAGVDTSEDKMSELEKKINMLMKAIEVKDYE 120

Query: 121 IASLKSQMESRDATESIHTLTIKDKGK 144
           IASLK+ +ESRDATES HT T K+ GK
Sbjct: 121 IASLKNHIESRDATESSHTHTAKNAGK 145

BLAST of Lag0008737 vs. NCBI nr
Match: KAA0063235.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 3.6e-17
Identity = 68/147 (46.26%), Postives = 96/147 (65.31%), Query Frame = 0

Query: 1   MTSEGASSKIAASSNYYVGTITRSRSKETE-HEDNQTLDIANKMLRRMAESSQLEIAITE 60
           MTS+  +SK  A S+      T SRS+ET+ ++D    ++AN +  + ++  +  I I E
Sbjct: 1   MTSQSNTSK--ALSDISKRPKTHSRSRETQSYKDMPPFEVANNIWEQFSKQPKGGIIIKE 60

Query: 61  NLMLGKSTSPFQQPN-ETTSPDVMSVMMTNAGTSEERMAEVEKKINMLLKMVEDKNYEIA 120
           NL++ K  S F+  N ET  P++MSVM T+  TS +RM E+EKKINML+K VE+++YEIA
Sbjct: 61  NLVINKHNSSFELSNEETPHPNIMSVMATDMDTSGDRMTELEKKINMLMKAVEERDYEIA 120

Query: 121 SLKSQMESRDATESIHTLTIK--DKGK 144
            LK+ +ES DATES HT T    DKGK
Sbjct: 121 YLKNHVESHDATESSHTYTTNNADKGK 145

BLAST of Lag0008737 vs. NCBI nr
Match: KAA0054002.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK20687.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 6.2e-17
Identity = 67/150 (44.67%), Postives = 98/150 (65.33%), Query Frame = 0

Query: 1   MTSEGASSKIAASSNYYVGTITRSRSKETE-HEDNQTLDIANKMLRRMAESSQLEIAITE 60
           MTSE  +SK  A S+      TR+RS+ET+ +E+    ++A  + ++ ++  + EI I E
Sbjct: 1   MTSESNTSK--ALSDISKRPNTRNRSRETQSYENMPPFEVAKNIWKQFSKPPKGEILIKE 60

Query: 61  NLMLGKSTSPFQQ-PNETTSPDVMSVMMTNAGTSEERMAEVEKKINMLLKMVEDKNYEIA 120
           N ++ K  S F+    E   P++  VM+T+  TSE+RM E+EKKINML+K V+++NYEIA
Sbjct: 61  NSVIDKHNSSFEHLSEEIPHPNITFVMVTDVDTSEDRMTELEKKINMLMKAVQERNYEIA 120

Query: 121 SLKSQMESRDATESIHTLTIK--DKGKTTI 147
           SLK+ +ESRDA ES HT T K  DKGK  +
Sbjct: 121 SLKNHIESRDAAESSHTHTAKNADKGKAVM 148

BLAST of Lag0008737 vs. NCBI nr
Match: KAA0065983.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28928.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 6.2e-17
Identity = 61/148 (41.22%), Postives = 95/148 (64.19%), Query Frame = 0

Query: 1   MTSEGASSKIAASSNYYVGTITRSRSKETEHEDNQTLDIANKMLRRMAESSQLEIAITEN 60
           M S+ A+S+ + +S+ Y G ITR+RSK    E +Q  D+   +L+++ ES +  I I EN
Sbjct: 29  MASKKAASRSSVASDGYTGPITRNRSKGITQEQDQGSDVPQSILKQLMESPKAVIVIKEN 88

Query: 61  LMLGKSTSPFQQPNETTSPDVMSVMMTNAGTSEERMAEVEKKINMLLKMVEDKNYEIASL 120
            +   S S   +  +   PDVMSVMMT+  T+E  MAE+E+KIN L+K+VE++++EI +L
Sbjct: 89  SLYDNSDSASSKSKKKEHPDVMSVMMTDI-TAEAVMAEMERKINFLMKVVEERDHEITAL 148

Query: 121 KSQMESRDATESIHTLTIK--DKGKTTI 147
           + QM++R+  ES  T  +K  DKGK  +
Sbjct: 149 REQMQTRETVESSQTSVVKATDKGKNVV 175

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0035918.12.5e-1845.33ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19070.1 ty3-gyp... [more]
KAA0056609.17.3e-1844.22ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK24292.1 ty3-gyp... [more]
KAA0063235.13.6e-1746.26ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0054002.16.2e-1744.67ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK20687.1 ty3-gyp... [more]
KAA0065983.16.2e-1741.22ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28928.1 ty3-gyp... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0008737.1Lag0008737.1mRNA