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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGATAACTCCAAACCCCAACTCTCTACCATTCCACAGCCGCTAGAAAATCTTCCAACTTCTTCTCCTCCGACGCCACATTCCGATCACCGACATTCACTTGTAGTCGAAAAGTTCAGAGATGCCCTCTTCTCCGCCGTCGCCGCCAAATATGCGACCAACGGCAGCGACCACTCCTTGCCTTTCCCCTCCGAGCAGCTCAAGGCAAATATCGAGCGTCGCCTTCACGAGTGTTTCCCCTCCTTCCACACTCCAACTCATCTTCCCTATGCCTCGGTAACTGTCTTTCACGTTGCTCGTCTTTGCTATCGATTAAGGTTTTTGAAGTTAACTGTTTTGTATATTTTTATTTTTTTTTCTTTCTAAAATTGAAATTTGGAGGAAATCCGATTTACATTGTGGTTGTAATTGAAACAATGGATGTTGATGAATTGATATTGTTTGGGAATGTAGATGATACAAAGGGCAATATCTGAAGTGGGAGAGGAAGATGGGTTGAGTGAGGAGTCTATATCGGAGTTTATTGTGAATGAACATGATGATTTTCCATGGGCACACGCTGCTTTTTTGCATCGTCATTTGGGGAAGTTCTGGGAAAGAAGGAAAAGAAAAGAAGGGGAAGATGATAAAAAAAGAAAAAAGTCGCCAACGACAGCGAGCGGTGGCCGCCGGAGATATGAAGAAGAAGAAAAAGGAAGAAGATGA mRNA sequence ATGGATAACTCCAAACCCCAACTCTCTACCATTCCACAGCCGCTAGAAAATCTTCCAACTTCTTCTCCTCCGACGCCACATTCCGATCACCGACATTCACTTGTAGTCGAAAAGTTCAGAGATGCCCTCTTCTCCGCCGTCGCCGCCAAATATGCGACCAACGGCAGCGACCACTCCTTGCCTTTCCCCTCCGAGCAGCTCAAGGCAAATATCGAGCGTCGCCTTCACGAGTGTTTCCCCTCCTTCCACACTCCAACTCATCTTCCCTATGCCTCGATGATACAAAGGGCAATATCTGAAGTGGGAGAGGAAGATGGGTTGAGTGAGGAGTCTATATCGGAGTTTATTGTGAATGAACATGATGATTTTCCATGGGCACACGCTGCTTTTTTGCATCGTCATTTGGGGAAGTTCTGGGAAAGAAGGAAAAGAAAAGAAGGGGAAGATGATAAAAAAAGAAAAAAGTCGCCAACGACAGCGAGCGGTGGCCGCCGGAGATATGAAGAAGAAGAAAAAGGAAGAAGATGA Coding sequence (CDS) ATGGATAACTCCAAACCCCAACTCTCTACCATTCCACAGCCGCTAGAAAATCTTCCAACTTCTTCTCCTCCGACGCCACATTCCGATCACCGACATTCACTTGTAGTCGAAAAGTTCAGAGATGCCCTCTTCTCCGCCGTCGCCGCCAAATATGCGACCAACGGCAGCGACCACTCCTTGCCTTTCCCCTCCGAGCAGCTCAAGGCAAATATCGAGCGTCGCCTTCACGAGTGTTTCCCCTCCTTCCACACTCCAACTCATCTTCCCTATGCCTCGATGATACAAAGGGCAATATCTGAAGTGGGAGAGGAAGATGGGTTGAGTGAGGAGTCTATATCGGAGTTTATTGTGAATGAACATGATGATTTTCCATGGGCACACGCTGCTTTTTTGCATCGTCATTTGGGGAAGTTCTGGGAAAGAAGGAAAAGAAAAGAAGGGGAAGATGATAAAAAAAGAAAAAAGTCGCCAACGACAGCGAGCGGTGGCCGCCGGAGATATGAAGAAGAAGAAAAAGGAAGAAGATGA Protein sequence MDNSKPQLSTIPQPLENLPTSSPPTPHSDHRHSLVVEKFRDALFSAVAAKYATNGSDHSLPFPSEQLKANIERRLHECFPSFHTPTHLPYASMIQRAISEVGEEDGLSEESISEFIVNEHDDFPWAHAAFLHRHLGKFWERRKRKEGEDDKKRKKSPTTASGGRRRYEEEEKGRR
Homology
BLAST of Lag0008687 vs. NCBI nr
Match: XP_022993719.1 (uncharacterized protein LOC111489634 isoform X1 [Cucurbita maxima]) HSP 1 Score: 211.8 bits (538), Expect = 4.6e-51 Identity = 115/182 (63.19%), Postives = 133/182 (73.08%), Query Frame = 0
Query: 1 MDNSKPQLSTIPQPLENLPTSSPPTPHSDHRHSLVVEKFRDALFSAVAAKYATNGSDHSL 60
M+NS+P LSTIP P EN P S TPHSDHR+SL+ +FRDALFSA AAKYATNGS HSL
Sbjct: 18 MENSQPHLSTIPTPPENSPPPSSVTPHSDHRYSLIAGRFRDALFSAAAAKYATNGSAHSL 77
Query: 61 PFPSEQLKANIERRLHECFPSFHTPTHLPYASMIQRAISEVGEEDGLSEESISEFIVNEH 120
PFPSEQ K+ IE LHE FPSF TPTHLPYASMIQ+AI+EVGEEDGLSEE ISEFIVNE+
Sbjct: 78 PFPSEQFKSVIECCLHENFPSFRTPTHLPYASMIQKAIAEVGEEDGLSEELISEFIVNEY 137
Query: 121 DDFPWAHAAFLHRHLGKFWERRK-----------RKEGEDDKKRKKSPTTASGGRRRYEE 172
D PWAH AFL RHLGK E + + EG++ K++K+ +A RRR E
Sbjct: 138 KDLPWAHPAFLRRHLGKLCESGELVKSKCGKYNFKVEGKEVKRKKRRRKSAGRSRRREVE 197
BLAST of Lag0008687 vs. NCBI nr
Match: KAG7016763.1 (hypothetical protein SDJN02_21873, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 210.7 bits (535), Expect = 1.0e-50 Identity = 114/182 (62.64%), Postives = 133/182 (73.08%), Query Frame = 0
Query: 1 MDNSKPQLSTIPQPLENLPTSSPPTPHSDHRHSLVVEKFRDALFSAVAAKYATNGSDHSL 60
M+NS+P LSTIP P EN P S TPHSDHR+SL+ +FRDALFSA AAKYATNGS HSL
Sbjct: 1 MENSQPHLSTIPTPPENSPPPSSVTPHSDHRYSLIAGRFRDALFSAAAAKYATNGSAHSL 60
Query: 61 PFPSEQLKANIERRLHECFPSFHTPTHLPYASMIQRAISEVGEEDGLSEESISEFIVNEH 120
PFPSEQ K+ IE LHE FPSF TPTHLPYASMIQ+AI+E+GEEDGLSEE ISEFIVNE+
Sbjct: 61 PFPSEQFKSVIECCLHENFPSFRTPTHLPYASMIQKAIAEMGEEDGLSEELISEFIVNEY 120
Query: 121 DDFPWAHAAFLHRHLGKFWERRK-----------RKEGEDDKKRKKSPTTASGGRRRYEE 172
D PWAH AFL RHLGK E + + EG++ K++K+ +A RRR E
Sbjct: 121 KDLPWAHPAFLRRHLGKLCESGELVKSKCGKYNFKVEGKEVKRKKRRRKSAGRSRRREVE 180
BLAST of Lag0008687 vs. NCBI nr
Match: KAG6579248.1 (hypothetical protein SDJN03_23696, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 210.7 bits (535), Expect = 1.0e-50 Identity = 114/182 (62.64%), Postives = 133/182 (73.08%), Query Frame = 0
Query: 1 MDNSKPQLSTIPQPLENLPTSSPPTPHSDHRHSLVVEKFRDALFSAVAAKYATNGSDHSL 60
M+NS+P LSTIP P EN P S TPHSDHR+SL+ +FRDALFSA AAKYATNGS HSL
Sbjct: 1 MENSQPHLSTIPTPPENSPPPSSVTPHSDHRYSLIAGRFRDALFSAAAAKYATNGSAHSL 60
Query: 61 PFPSEQLKANIERRLHECFPSFHTPTHLPYASMIQRAISEVGEEDGLSEESISEFIVNEH 120
PFPSEQ K+ IE LHE FPSF TPTHLPYASMIQ+AI+E+GEEDGLSEE ISEFIVNE+
Sbjct: 61 PFPSEQFKSVIECCLHENFPSFRTPTHLPYASMIQKAIAEMGEEDGLSEELISEFIVNEY 120
Query: 121 DDFPWAHAAFLHRHLGKFWERRK-----------RKEGEDDKKRKKSPTTASGGRRRYEE 172
D PWAH AFL RHLGK E + + EG++ K++K+ +A RRR E
Sbjct: 121 KDLPWAHPAFLRRHLGKLCESGELVKSKCGKYNFKVEGKEVKRKKRRRKSAGRSRRREVE 180
BLAST of Lag0008687 vs. NCBI nr
Match: XP_023549578.1 (uncharacterized protein LOC111808038 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 210.3 bits (534), Expect = 1.3e-50 Identity = 114/182 (62.64%), Postives = 133/182 (73.08%), Query Frame = 0
Query: 1 MDNSKPQLSTIPQPLENLPTSSPPTPHSDHRHSLVVEKFRDALFSAVAAKYATNGSDHSL 60
M+NS+P LSTIP P EN P S TPHSDHR+SL+ +FRDALFSA AAKYATNGS HSL
Sbjct: 1 MENSQPHLSTIPTPPENSPPPSSVTPHSDHRYSLIFGRFRDALFSAAAAKYATNGSAHSL 60
Query: 61 PFPSEQLKANIERRLHECFPSFHTPTHLPYASMIQRAISEVGEEDGLSEESISEFIVNEH 120
PFPSEQ K+ IE LH+ FPSF TPTHLPYASMIQ+AI+EVGEEDGLSEE ISEFIVNE+
Sbjct: 61 PFPSEQFKSVIECCLHQNFPSFRTPTHLPYASMIQKAITEVGEEDGLSEELISEFIVNEY 120
Query: 121 DDFPWAHAAFLHRHLGKFWERRK-----------RKEGEDDKKRKKSPTTASGGRRRYEE 172
D PWAH AFL RHLGK E + + EG++ K++K+ +A RRR E
Sbjct: 121 KDLPWAHPAFLRRHLGKLCESGELVKSKCGKYNFKVEGKEVKRKKRRRKSAGRSRRREVE 180
BLAST of Lag0008687 vs. NCBI nr
Match: XP_022938936.1 (uncharacterized protein LOC111444998 isoform X1 [Cucurbita moschata]) HSP 1 Score: 209.5 bits (532), Expect = 2.3e-50 Identity = 113/182 (62.09%), Postives = 133/182 (73.08%), Query Frame = 0
Query: 1 MDNSKPQLSTIPQPLENLPTSSPPTPHSDHRHSLVVEKFRDALFSAVAAKYATNGSDHSL 60
M+NS+P LSTIP P EN P S TPHSDHR+SL+ +FRDALFSA AAKYATNGS HSL
Sbjct: 1 MENSQPHLSTIPTPPENSPPPSSVTPHSDHRYSLIAGRFRDALFSAAAAKYATNGSAHSL 60
Query: 61 PFPSEQLKANIERRLHECFPSFHTPTHLPYASMIQRAISEVGEEDGLSEESISEFIVNEH 120
PFPSEQ K+ IE LH+ FPSF TPTHLPYASMIQ+AI+E+GEEDGLSEE ISEFIVNE+
Sbjct: 61 PFPSEQFKSVIECCLHQNFPSFRTPTHLPYASMIQKAIAEMGEEDGLSEELISEFIVNEY 120
Query: 121 DDFPWAHAAFLHRHLGKFWERRK-----------RKEGEDDKKRKKSPTTASGGRRRYEE 172
D PWAH AFL RHLGK E + + EG++ K++K+ +A RRR E
Sbjct: 121 KDLPWAHPAFLRRHLGKLCESGELVKSKCGKYNFKVEGKEVKRKKRRRKSAGRSRRREVE 180
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022993719.1 | 4.6e-51 | 63.19 | uncharacterized protein LOC111489634 isoform X1 [Cucurbita maxima] | [more] |
| KAG7016763.1 | 1.0e-50 | 62.64 | hypothetical protein SDJN02_21873, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6579248.1 | 1.0e-50 | 62.64 | hypothetical protein SDJN03_23696, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_023549578.1 | 1.3e-50 | 62.64 | uncharacterized protein LOC111808038 isoform X1 [Cucurbita pepo subsp. pepo] | [more] |
| XP_022938936.1 | 2.3e-50 | 62.09 | uncharacterized protein LOC111444998 isoform X1 [Cucurbita moschata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR036388 | Winged helix-like DNA-binding domain superfamily | GENE3D | 1.10.10.10 | | coord: 82..167
e-value: 5.7E-9
score: 37.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 142..175 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..28 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..31 |
| None | No IPR available | PANTHER | PTHR11467 | HISTONE H1 | coord: 49..142 |
| None | No IPR available | PANTHER | PTHR11467:SF109 | BNAC09G47260D PROTEIN | coord: 49..142 |
| IPR005818 | Linker histone H1/H5, domain H15 | PROSITE | PS51504 | H15 | coord: 86..157
score: 11.938169 |
| IPR036390 | Winged helix DNA-binding domain superfamily | SUPERFAMILY | 46785 | "Winged helix" DNA-binding domain | coord: 84..142 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006334 |
nucleosome assembly |
| cellular_component |
GO:0000786 |
nucleosome |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0008168 |
methyltransferase activity |
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