Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCACGGTAGAATCAATGTGGTGCCTAGTTATGGTGGATGGGTGAGAATCAGAAACCTCCCGATGCATTTATGGAACGTAAGAATATTTAAAGCTATAGGAGATTGTCTGAGGGGGTTCATTAAATATGTTGAATCTAACTCTCCCCTCATTGAATGCATTGAGGTTTGGATAAGAGTTAGAAACAGTTATTGTGGATTCATTCCAGGTGAAGTTGGAATTATTGATGGGGATCACGTCTTTAAAATGCAGGTCGTCACGTTTCAGGATGGAAATATGTTAATTGACCGTGTCGCCGGAATCCATGGAAGCTTCTTGCCGGCGGCAGCCCATGCTTTCCACAGAGGCCCGTTGGATCCTGAGTTTAACACAGTGGACAAATGGAGAATTGAAGATGGTACCTTTTCTCCACAGGTCAAAGCCCAAAAGGTCATTGCAGAAAACGAGAAAGTAGGAGAGCCATTTAATGAAAAACAGAGGGCAGTCAGTGAAAATTTTGAATTAGCCCGCCAAAAAGGAAAAATGAAGGTGGATGAGAATTTTGGGCCTACCCTAGCCCAAAAAACAAGTGGGAGGGCCATAAGAAAAGACAGAAGAAGGCCCACGAAGTCAGTCCCACGAGAGAAAGCCCAAAGGCTAAGACAAAGAACCGAAGAGAAGTATCTTTTGCCAAAGAAACCCAAGTTACCGTGTTGA
mRNA sequence
ATGATGCACGGTAGAATCAATGTGGTGCCTAGTTATGGTGGATGGGTGAGAATCAGAAACCTCCCGATGCATTTATGGAACGTAAGAATATTTAAAGCTATAGGAGATTGTCTGAGGGGGTTCATTAAATATGTTGAATCTAACTCTCCCCTCATTGAATGCATTGAGGTTTGGATAAGAGTTAGAAACAGTTATTGTGGATTCATTCCAGGTGAAGTTGGAATTATTGATGGGGATCACGTCTTTAAAATGCAGGTCGTCACGTTTCAGGATGGAAATATGTTAATTGACCGTGTCGCCGGAATCCATGGAAGCTTCTTGCCGGCGGCAGCCCATGCTTTCCACAGAGGCCCGTTGGATCCTGAGTTTAACACAGTGGACAAATGGAGAATTGAAGATGGTACCTTTTCTCCACAGGTCAAAGCCCAAAAGGTCATTGCAGAAAACGAGAAAGTAGGAGAGCCATTTAATGAAAAACAGAGGGCAGTCAGTGAAAATTTTGAATTAGCCCGCCAAAAAGGAAAAATGAAGGTGGATGAGAATTTTGGGCCTACCCTAGCCCAAAAAACAAGTGGGAGGGCCATAAGAAAAGACAGAAGAAGGCCCACGAAGTCAGTCCCACGAGAGAAAGCCCAAAGGCTAAGACAAAGAACCGAAGAGAAGTATCTTTTGCCAAAGAAACCCAAGTTACCGTGTTGA
Coding sequence (CDS)
ATGATGCACGGTAGAATCAATGTGGTGCCTAGTTATGGTGGATGGGTGAGAATCAGAAACCTCCCGATGCATTTATGGAACGTAAGAATATTTAAAGCTATAGGAGATTGTCTGAGGGGGTTCATTAAATATGTTGAATCTAACTCTCCCCTCATTGAATGCATTGAGGTTTGGATAAGAGTTAGAAACAGTTATTGTGGATTCATTCCAGGTGAAGTTGGAATTATTGATGGGGATCACGTCTTTAAAATGCAGGTCGTCACGTTTCAGGATGGAAATATGTTAATTGACCGTGTCGCCGGAATCCATGGAAGCTTCTTGCCGGCGGCAGCCCATGCTTTCCACAGAGGCCCGTTGGATCCTGAGTTTAACACAGTGGACAAATGGAGAATTGAAGATGGTACCTTTTCTCCACAGGTCAAAGCCCAAAAGGTCATTGCAGAAAACGAGAAAGTAGGAGAGCCATTTAATGAAAAACAGAGGGCAGTCAGTGAAAATTTTGAATTAGCCCGCCAAAAAGGAAAAATGAAGGTGGATGAGAATTTTGGGCCTACCCTAGCCCAAAAAACAAGTGGGAGGGCCATAAGAAAAGACAGAAGAAGGCCCACGAAGTCAGTCCCACGAGAGAAAGCCCAAAGGCTAAGACAAAGAACCGAAGAGAAGTATCTTTTGCCAAAGAAACCCAAGTTACCGTGTTGA
Protein sequence
MMHGRINVVPSYGGWVRIRNLPMHLWNVRIFKAIGDCLRGFIKYVESNSPLIECIEVWIRVRNSYCGFIPGEVGIIDGDHVFKMQVVTFQDGNMLIDRVAGIHGSFLPAAAHAFHRGPLDPEFNTVDKWRIEDGTFSPQVKAQKVIAENEKVGEPFNEKQRAVSENFELARQKGKMKVDENFGPTLAQKTSGRAIRKDRRRPTKSVPREKAQRLRQRTEEKYLLPKKPKLPC
Homology
BLAST of Lag0008673 vs. NCBI nr
Match:
XP_022149859.1 (uncharacterized protein LOC111018186 [Momordica charantia] >XP_022149860.1 uncharacterized protein LOC111018186 [Momordica charantia])
HSP 1 Score: 162.5 bits (410), Expect = 4.2e-36
Identity = 68/143 (47.55%), Postives = 99/143 (69.23%), Query Frame = 0
Query: 1 MMHGRINVVPSYGGWVRIRNLPMHLWNVRIFKAIGDCLRGFIKYVESNSPLIECIEVWIR 60
++HGR + PSYG WV+IRN+P+HLW++ FKAIG+ L GFI Y ++NS IEC +V I+
Sbjct: 121 LLHGRAFLFPSYGNWVKIRNIPLHLWSLATFKAIGNALGGFIDYDDNNSCFIECFDVAIK 180
Query: 61 VRNSYCGFIPGEVGIIDGDHVFKMQVVTFQDGNMLIDRVAGIHGSFLPAAAHAFHRGPLD 120
V+++YCGFIP E+ +DG F+ +VV+F+D L + GIHG F AA +FH+G +
Sbjct: 181 VKSNYCGFIPAEISSMDGPLCFQAKVVSFEDSKWLARKDVGIHGGFSSEAARSFHQGSAE 240
Query: 121 PEFNTVDKWRIEDGTFSPQVKAQ 144
N++D+WR+E+G P V Q
Sbjct: 241 QSANSIDRWRLENGCNYPGVNIQ 263
BLAST of Lag0008673 vs. NCBI nr
Match:
TYK01560.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 122.1 bits (305), Expect = 6.4e-24
Identity = 49/90 (54.44%), Postives = 66/90 (73.33%), Query Frame = 0
Query: 2 MHGRINVVPSYGGWVRIRNLPMHLWNVRIFKAIGDCLRGFIKYVESNSPLIECIEVWIRV 61
+HGR+ VPSYGGW+++RN P HLWN IFK +GD LRGFI Y + NS LI+C+EV I+V
Sbjct: 21 IHGRMLFVPSYGGWIKLRNFPQHLWNEEIFKKVGDMLRGFINYTKENSSLIDCVEVAIKV 80
Query: 62 RNSYCGFIPGEVGIIDGDHVFKMQVVTFQD 92
+ +YCGF+P E +ID F +QV + Q+
Sbjct: 81 KGNYCGFVPLEFDLIDDPDSFLVQVASLQE 110
BLAST of Lag0008673 vs. NCBI nr
Match:
KAA0044557.1 (hypothetical protein E6C27_scaffold46G003060 [Cucumis melo var. makuwa])
HSP 1 Score: 110.5 bits (275), Expect = 1.9e-20
Identity = 72/219 (32.88%), Postives = 107/219 (48.86%), Query Frame = 0
Query: 3 HGRINVVPSYGGWVRIRNLPMHLWNVRIFKAIGDCLRGFIKYVESNSPLIECIEVWIRVR 62
H V+PSYGGW R R +P+H+WN+ F IG+ GFI + IE E I+V+
Sbjct: 271 HADTKVIPSYGGWTRFRGIPLHIWNLNTFIQIGEACGGFIDAAPESVNKIELTEALIKVK 330
Query: 63 NSYCGFIPGEVGIIDGD-HVFKMQVVTFQDGNMLIDRVAGIHGSFLPAAAHAFHRGPLDP 122
+Y GF+P + I D + HVF +Q VT +G L +R IHGSF AA F+
Sbjct: 331 ENYTGFLPAFIQIHDEEGHVFIIQTVTHPEGRWLRERNPSIHGSFTKTAAENFN------ 390
Query: 123 EFNTVDKWRIEDGTFSPQVKAQKVIAENEKVGEPFNEKQRAVSENFELARQKGKMKVDEN 182
EFN ++ Q ++ +A K+ P E + S+ R+KG K +
Sbjct: 391 EFN----------PYAEQFTFRRNLAVISKLDLP--ESSKNGSKQMNADRKKGPTKTIKK 450
Query: 183 FGPTLAQKTSGRAIRKDRRRPTKSVPREKAQRLRQRTEE 221
F TL S + +RPT S ++K R++ ++ E
Sbjct: 451 FNKTLGSPMSYAKMEAKSKRPTPST-KKKVYRVKSQSTE 470
BLAST of Lag0008673 vs. NCBI nr
Match:
KAA0041398.1 (hypothetical protein E6C27_scaffold206G00440 [Cucumis melo var. makuwa])
HSP 1 Score: 110.5 bits (275), Expect = 1.9e-20
Identity = 71/220 (32.27%), Postives = 109/220 (49.55%), Query Frame = 0
Query: 2 MHGRINVVPSYGGWVRIRNLPMHLWNVRIFKAIGDCLRGFIKYVESNSPLIECIEVWIRV 61
+H V+PSYGGW R R +P+H+WN+ F IG+ GFI + IE E I+V
Sbjct: 293 VHADTKVIPSYGGWTRFRGIPLHIWNLNTFIHIGEACGGFIDAAPESVNKIELTEALIKV 352
Query: 62 RNSYCGFIPGEVGIIDGD-HVFKMQVVTFQDGNMLIDRVAGIHGSFLPAAAHAFHRGPLD 121
+ +Y GF+P + I D + HVF +Q+VT +G L +R IHGSF AA F+
Sbjct: 353 KENYTGFLPAFIQIHDEEGHVFIIQIVTHPEGRWLRERNPSIHGSFKKTAAENFN----- 412
Query: 122 PEFNTVDKWRIEDGTFSPQVKAQKVIAENEKVGEPFNEKQRAVSENFELARQKGKMKVDE 181
EFN ++ Q ++ +A K+ +E + S+ R+KG K +
Sbjct: 413 -EFN----------PYAEQFTFRRNLAVISKL--DLSESSKNGSKQMNADRKKGPTKTIK 472
Query: 182 NFGPTLAQKTSGRAIRKDRRRPTKSVPREKAQRLRQRTEE 221
F TL S + +RPT S ++K R++ ++ E
Sbjct: 473 KFNKTLGSPMSYAKMEAKSKRPTPST-KKKVYRVKSQSTE 493
BLAST of Lag0008673 vs. NCBI nr
Match:
TYK10355.1 (hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa])
HSP 1 Score: 102.4 bits (254), Expect = 5.2e-18
Identity = 68/224 (30.36%), Postives = 117/224 (52.23%), Query Frame = 0
Query: 3 HGRINVVPSYGGWVRIRNLPMHLWNVRIFKAIGDCLRGFIKYVESNSPLIECIEVWIRVR 62
H V+PSYGGW+++R +P+H WN+ F IGD GFI+ + L + IE IR++
Sbjct: 366 HASPKVIPSYGGWIKVRGVPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIK 425
Query: 63 NSYCGFIPGEVGIID-GDHVFKMQVVTFQDGNMLIDRVAGIHGSFLPAAAHAFHRGPLDP 122
++Y GFIP + + D +H F +QV+ +G ++R IHG+F AA F
Sbjct: 426 DNYSGFIPAFIKLFDKEEHSFIIQVIVKTEGKWHLERSPSIHGTFTREAAKRF------D 485
Query: 123 EFN-TVDKWRIEDG-TFSPQVKAQKVIAENEKVGE------PFNEKQRAVSE--NFE--- 182
EFN +++ ED SP+ VI + ++ + N+K A+ + N++
Sbjct: 486 EFNLNSEQYFFEDNLVISPEKAVSMVIGKEDRKKKGNGLIPEINKKLGAMMDFLNYDGDS 545
Query: 183 LARQKGKMKVDENFGPTLAQKTSGRAIRKDRRRPTKSVPREKAQ 213
+ +K KM+ +++ ++QK G+ K +KS+ + KA+
Sbjct: 546 DSSEKRKMETEDDELTVISQK-GGKFFYKGEN--SKSIGKRKAK 580
BLAST of Lag0008673 vs. ExPASy TrEMBL
Match:
A0A6J1D6X4 (uncharacterized protein LOC111018186 OS=Momordica charantia OX=3673 GN=LOC111018186 PE=4 SV=1)
HSP 1 Score: 162.5 bits (410), Expect = 2.1e-36
Identity = 68/143 (47.55%), Postives = 99/143 (69.23%), Query Frame = 0
Query: 1 MMHGRINVVPSYGGWVRIRNLPMHLWNVRIFKAIGDCLRGFIKYVESNSPLIECIEVWIR 60
++HGR + PSYG WV+IRN+P+HLW++ FKAIG+ L GFI Y ++NS IEC +V I+
Sbjct: 121 LLHGRAFLFPSYGNWVKIRNIPLHLWSLATFKAIGNALGGFIDYDDNNSCFIECFDVAIK 180
Query: 61 VRNSYCGFIPGEVGIIDGDHVFKMQVVTFQDGNMLIDRVAGIHGSFLPAAAHAFHRGPLD 120
V+++YCGFIP E+ +DG F+ +VV+F+D L + GIHG F AA +FH+G +
Sbjct: 181 VKSNYCGFIPAEISSMDGPLCFQAKVVSFEDSKWLARKDVGIHGGFSSEAARSFHQGSAE 240
Query: 121 PEFNTVDKWRIEDGTFSPQVKAQ 144
N++D+WR+E+G P V Q
Sbjct: 241 QSANSIDRWRLENGCNYPGVNIQ 263
BLAST of Lag0008673 vs. ExPASy TrEMBL
Match:
A0A5D3BR42 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001340 PE=4 SV=1)
HSP 1 Score: 122.1 bits (305), Expect = 3.1e-24
Identity = 49/90 (54.44%), Postives = 66/90 (73.33%), Query Frame = 0
Query: 2 MHGRINVVPSYGGWVRIRNLPMHLWNVRIFKAIGDCLRGFIKYVESNSPLIECIEVWIRV 61
+HGR+ VPSYGGW+++RN P HLWN IFK +GD LRGFI Y + NS LI+C+EV I+V
Sbjct: 21 IHGRMLFVPSYGGWIKLRNFPQHLWNEEIFKKVGDMLRGFINYTKENSSLIDCVEVAIKV 80
Query: 62 RNSYCGFIPGEVGIIDGDHVFKMQVVTFQD 92
+ +YCGF+P E +ID F +QV + Q+
Sbjct: 81 KGNYCGFVPLEFDLIDDPDSFLVQVASLQE 110
BLAST of Lag0008673 vs. ExPASy TrEMBL
Match:
A0A5A7TEP0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00440 PE=4 SV=1)
HSP 1 Score: 110.5 bits (275), Expect = 9.3e-21
Identity = 71/220 (32.27%), Postives = 109/220 (49.55%), Query Frame = 0
Query: 2 MHGRINVVPSYGGWVRIRNLPMHLWNVRIFKAIGDCLRGFIKYVESNSPLIECIEVWIRV 61
+H V+PSYGGW R R +P+H+WN+ F IG+ GFI + IE E I+V
Sbjct: 293 VHADTKVIPSYGGWTRFRGIPLHIWNLNTFIHIGEACGGFIDAAPESVNKIELTEALIKV 352
Query: 62 RNSYCGFIPGEVGIIDGD-HVFKMQVVTFQDGNMLIDRVAGIHGSFLPAAAHAFHRGPLD 121
+ +Y GF+P + I D + HVF +Q+VT +G L +R IHGSF AA F+
Sbjct: 353 KENYTGFLPAFIQIHDEEGHVFIIQIVTHPEGRWLRERNPSIHGSFKKTAAENFN----- 412
Query: 122 PEFNTVDKWRIEDGTFSPQVKAQKVIAENEKVGEPFNEKQRAVSENFELARQKGKMKVDE 181
EFN ++ Q ++ +A K+ +E + S+ R+KG K +
Sbjct: 413 -EFN----------PYAEQFTFRRNLAVISKL--DLSESSKNGSKQMNADRKKGPTKTIK 472
Query: 182 NFGPTLAQKTSGRAIRKDRRRPTKSVPREKAQRLRQRTEE 221
F TL S + +RPT S ++K R++ ++ E
Sbjct: 473 KFNKTLGSPMSYAKMEAKSKRPTPST-KKKVYRVKSQSTE 493
BLAST of Lag0008673 vs. ExPASy TrEMBL
Match:
A0A5A7TRS9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003060 PE=4 SV=1)
HSP 1 Score: 110.5 bits (275), Expect = 9.3e-21
Identity = 72/219 (32.88%), Postives = 107/219 (48.86%), Query Frame = 0
Query: 3 HGRINVVPSYGGWVRIRNLPMHLWNVRIFKAIGDCLRGFIKYVESNSPLIECIEVWIRVR 62
H V+PSYGGW R R +P+H+WN+ F IG+ GFI + IE E I+V+
Sbjct: 271 HADTKVIPSYGGWTRFRGIPLHIWNLNTFIQIGEACGGFIDAAPESVNKIELTEALIKVK 330
Query: 63 NSYCGFIPGEVGIIDGD-HVFKMQVVTFQDGNMLIDRVAGIHGSFLPAAAHAFHRGPLDP 122
+Y GF+P + I D + HVF +Q VT +G L +R IHGSF AA F+
Sbjct: 331 ENYTGFLPAFIQIHDEEGHVFIIQTVTHPEGRWLRERNPSIHGSFTKTAAENFN------ 390
Query: 123 EFNTVDKWRIEDGTFSPQVKAQKVIAENEKVGEPFNEKQRAVSENFELARQKGKMKVDEN 182
EFN ++ Q ++ +A K+ P E + S+ R+KG K +
Sbjct: 391 EFN----------PYAEQFTFRRNLAVISKLDLP--ESSKNGSKQMNADRKKGPTKTIKK 450
Query: 183 FGPTLAQKTSGRAIRKDRRRPTKSVPREKAQRLRQRTEE 221
F TL S + +RPT S ++K R++ ++ E
Sbjct: 451 FNKTLGSPMSYAKMEAKSKRPTPST-KKKVYRVKSQSTE 470
BLAST of Lag0008673 vs. ExPASy TrEMBL
Match:
A0A5D3CFS8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00330 PE=4 SV=1)
HSP 1 Score: 102.4 bits (254), Expect = 2.5e-18
Identity = 68/224 (30.36%), Postives = 117/224 (52.23%), Query Frame = 0
Query: 3 HGRINVVPSYGGWVRIRNLPMHLWNVRIFKAIGDCLRGFIKYVESNSPLIECIEVWIRVR 62
H V+PSYGGW+++R +P+H WN+ F IGD GFI+ + L + IE IR++
Sbjct: 366 HASPKVIPSYGGWIKVRGVPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIK 425
Query: 63 NSYCGFIPGEVGIID-GDHVFKMQVVTFQDGNMLIDRVAGIHGSFLPAAAHAFHRGPLDP 122
++Y GFIP + + D +H F +QV+ +G ++R IHG+F AA F
Sbjct: 426 DNYSGFIPAFIKLFDKEEHSFIIQVIVKTEGKWHLERSPSIHGTFTREAAKRF------D 485
Query: 123 EFN-TVDKWRIEDG-TFSPQVKAQKVIAENEKVGE------PFNEKQRAVSE--NFE--- 182
EFN +++ ED SP+ VI + ++ + N+K A+ + N++
Sbjct: 486 EFNLNSEQYFFEDNLVISPEKAVSMVIGKEDRKKKGNGLIPEINKKLGAMMDFLNYDGDS 545
Query: 183 LARQKGKMKVDENFGPTLAQKTSGRAIRKDRRRPTKSVPREKAQ 213
+ +K KM+ +++ ++QK G+ K +KS+ + KA+
Sbjct: 546 DSSEKRKMETEDDELTVISQK-GGKFFYKGEN--SKSIGKRKAK 580
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022149859.1 | 4.2e-36 | 47.55 | uncharacterized protein LOC111018186 [Momordica charantia] >XP_022149860.1 uncha... | [more] |
TYK01560.1 | 6.4e-24 | 54.44 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0044557.1 | 1.9e-20 | 32.88 | hypothetical protein E6C27_scaffold46G003060 [Cucumis melo var. makuwa] | [more] |
KAA0041398.1 | 1.9e-20 | 32.27 | hypothetical protein E6C27_scaffold206G00440 [Cucumis melo var. makuwa] | [more] |
TYK10355.1 | 5.2e-18 | 30.36 | hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1D6X4 | 2.1e-36 | 47.55 | uncharacterized protein LOC111018186 OS=Momordica charantia OX=3673 GN=LOC111018... | [more] |
A0A5D3BR42 | 3.1e-24 | 54.44 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TEP0 | 9.3e-21 | 32.27 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5A7TRS9 | 9.3e-21 | 32.88 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5D3CFS8 | 2.5e-18 | 30.36 | DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
Match Name | E-value | Identity | Description | |