Lag0008631 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0008631
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	alanine:glyoxylate aminotransferase 2
Location	chr9: 26792367 .. 26793491 (-)
RNA-Seq Expression	Lag0008631
Synteny	Lag0008631

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATATTTGTTTGATGAAAATGGAAGGCGCTACCTTGATGCTTTTGCTGGAATAGTTACTGTATCTTGTGGGCATTGCCATCCTGATGTTTTGGTTGCAGTCAATGAGCAGAACAAACTTCTACAGCATGCTACAACCATATACCTACACCATGCAATAGCTGATTTTGTTGAAGCATTGGCGGCAAAAATTCCTGGAAACTTGAAGGTGCTTTCTCTGTCAGAAGTATTAAATAATATTAACTTATTTTAGCAATGAATGATTGATAACAAAGCAAAGCATGTAGCAAATGTTAGGCTCTGTGGAAATTGCTGAACTTGTATTTGAACCTTCATTTAGAGATGGTGATGCATATTTGTTGACCTGAAGGATAAGATAGTTGAATTCTTAGAACTGGAGGATCTTTTCATATTTCTCATTTTTGGTCGTTGAGCTGTTATTCCATCACTCCTCGATTCTCCTTATTACCCATTTTTAAAAGAATATCATACTCTTGTATTGCTTCAAACATCTGCTTATTTCACTGGATTATGCAGGTTGTATATTTTGTAAACTCTAGGACAGAAGCAAATGAATTAGCTATGCTTATGGCCCGTCTATATAGTGGTAATCTAGGTATGATAGCATTGAGAAATGCATACCATGGAGGAAGTTCCAACACAATTGGACTGACAGCTTTGAACACATATGGAAGTACCCAATACCTCAGGTTTTTTCTACCTTGAGCTTAATCTTCAGTGTTATGGTTCGTTTGGTTGCTTGTATTTTAGAAATAGAACTTACATTGCCTTCTGGTTTTCTACTTATTTGATTTTTTTTTTTTTGCAGCATCTTTTAATTTAAATATAACATTTTAGAAAATTATTAACATGAATCAATTAACTACTTGAAGTAGAAACATCTACTGTTCTTTGGAACTGCTATTAGTAAAAAAAAAAAAAAAACAAGGGTGCATTCAAGCCATATTGCAGATGGAGATTTCAAATGCAATTTTTTTTCGTGCAAACACACATAATAAATTGCTGGTTTTAGTCGGCAGCTACATTTGCTGCAATTGGCAGGGCAGTTCAATTCAAGTATTTTGATTCATCTGCAAAATTCTTGTGGCACCTTGCAGGGTGA

mRNA sequence

ATGCAATATTTGTTTGATGAAAATGGAAGGCGCTACCTTGATGCTTTTGCTGGAATAGTTACTGTATCTTGTGGGCATTGCCATCCTGATGTTTTGGTTGCAGTCAATGAGCAGAACAAACTTCTACAGCATGCTACAACCATATACCTACACCATGCAATAGCTGATTTTGTTGAAGCATTGGCGGCAAAAATTCCTGGAAACTTGAAGGTTGTATATTTTGTAAACTCTAGGACAGAAGCAAATGAATTAGCTATGCTTATGGCCCGTCTATATAGTGGTAATCTAGGTATGATAGCATTGAGAAATGCATACCATGGAGGAAGTTCCAACACAATTGGACTGACAGCTTTGAACACATATGGAAGTACCCAATACCTCAGGGCAGTTCAATTCAAGTATTTTGATTCATCTGCAAAATTCTTGTGGCACCTTGCAGGGTGA

Coding sequence (CDS)

ATGCAATATTTGTTTGATGAAAATGGAAGGCGCTACCTTGATGCTTTTGCTGGAATAGTTACTGTATCTTGTGGGCATTGCCATCCTGATGTTTTGGTTGCAGTCAATGAGCAGAACAAACTTCTACAGCATGCTACAACCATATACCTACACCATGCAATAGCTGATTTTGTTGAAGCATTGGCGGCAAAAATTCCTGGAAACTTGAAGGTTGTATATTTTGTAAACTCTAGGACAGAAGCAAATGAATTAGCTATGCTTATGGCCCGTCTATATAGTGGTAATCTAGGTATGATAGCATTGAGAAATGCATACCATGGAGGAAGTTCCAACACAATTGGACTGACAGCTTTGAACACATATGGAAGTACCCAATACCTCAGGGCAGTTCAATTCAAGTATTTTGATTCATCTGCAAAATTCTTGTGGCACCTTGCAGGGTGA

Protein sequence

MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLVAVNEQNKLLQHATTIYLHHAIADFVEALAAKIPGNLKVVYFVNSRTEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNTYGSTQYLRAVQFKYFDSSAKFLWHLAG

Homology

[Close]

BLAST of Lag0008631 vs. NCBI nr
Match: XP_022941785.1 (alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLVAVNEQNKLLQHATTIYLHHAIADFVEA 60
           MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVL AVNEQNKLLQHATTIYLHHAIADF EA
Sbjct: 91  MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLAAVNEQNKLLQHATTIYLHHAIADFAEA 150

Query: 61  LAAKIPGNLKVVYFVNSRTEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNT 120
           LAAK+PGNLKVVYFVNS TEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNT
Sbjct: 151 LAAKMPGNLKVVYFVNSGTEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNT 210

Query: 121 Y 122
           +
Sbjct: 211 W 211

[Close]

BLAST of Lag0008631 vs. NCBI nr
Match: KAG7031256.1 (Alanine--glyoxylate aminotransferase 2-like 1, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLVAVNEQNKLLQHATTIYLHHAIADFVEA 60
           MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVL AVNEQNKLLQHATTIYLHHAIADF EA
Sbjct: 91  MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLAAVNEQNKLLQHATTIYLHHAIADFAEA 150

Query: 61  LAAKIPGNLKVVYFVNSRTEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNT 120
           LAAK+PGNLKVVYFVNS TEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNT
Sbjct: 151 LAAKMPGNLKVVYFVNSGTEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNT 210

Query: 121 Y 122
           +
Sbjct: 211 W 211

[Close]

BLAST of Lag0008631 vs. NCBI nr
Match: XP_022980667.1 (alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLVAVNEQNKLLQHATTIYLHHAIADFVEA 60
           MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVL AVNEQNKLLQHATTIYLHHAIADF EA
Sbjct: 91  MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLAAVNEQNKLLQHATTIYLHHAIADFAEA 150

Query: 61  LAAKIPGNLKVVYFVNSRTEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNT 120
           LAAK+PGNLKVVYFVNS TEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNT
Sbjct: 151 LAAKMPGNLKVVYFVNSGTEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNT 210

Query: 121 Y 122
           +
Sbjct: 211 W 211

[Close]

BLAST of Lag0008631 vs. NCBI nr
Match: XP_023541489.1 (alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLVAVNEQNKLLQHATTIYLHHAIADFVEA 60
           MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVL AVNEQNKLLQHATTIYLHHAIADF EA
Sbjct: 91  MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLAAVNEQNKLLQHATTIYLHHAIADFAEA 150

Query: 61  LAAKIPGNLKVVYFVNSRTEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNT 120
           LAAK+PGNLKVVYFVNS TEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNT
Sbjct: 151 LAAKMPGNLKVVYFVNSGTEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNT 210

Query: 121 Y 122
           +
Sbjct: 211 W 211

[Close]

BLAST of Lag0008631 vs. NCBI nr
Match: KAG6600622.1 (LRR receptor kinase BAK1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 235.7 bits (600), Expect = 2.5e-58
Identity = 115/121 (95.04%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLVAVNEQNKLLQHATTIYLHHAIADFVEA 60
           MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVL AVNEQNKLLQHATTIYLHHAIADF EA
Sbjct: 740 MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLAAVNEQNKLLQHATTIYLHHAIADFAEA 799

Query: 61  LAAKIPGNLKVVYFVNSRTEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNT 120
           LAAK+PGNLKVVYFVNS TEANELAMLMARLYSGNLGM+ALRNAYHGGSSNTIGLTALNT
Sbjct: 800 LAAKMPGNLKVVYFVNSGTEANELAMLMARLYSGNLGMMALRNAYHGGSSNTIGLTALNT 859

Query: 121 Y 122
           +
Sbjct: 860 W 860

[Close]

BLAST of Lag0008631 vs. ExPASy Swiss-Prot
Match: Q940M2 (Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=AGT2 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.1e-55
Identity = 103/121 (85.12%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLVAVNEQNKLLQHATTIYLHHAIADFVEA 60
           MQYL+DE+GRRYLDAFAGIVTVSCGHCHPD+L A+ EQ+KLLQHATTIYLHHAI DF EA
Sbjct: 86  MQYLYDESGRRYLDAFAGIVTVSCGHCHPDILNAITEQSKLLQHATTIYLHHAIGDFAEA 145

Query: 61  LAAKIPGNLKVVYFVNSRTEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNT 120
           LAAK+PGNLKVVYFVNS +EANELAM+MARLY+G+L MI+LRNAYHGGSSNTIGLTALNT
Sbjct: 146 LAAKMPGNLKVVYFVNSGSEANELAMMMARLYTGSLEMISLRNAYHGGSSNTIGLTALNT 205

Query: 121 Y 122
           +
Sbjct: 206 W 206

[Close]

BLAST of Lag0008631 vs. ExPASy Swiss-Prot
Match: Q94AL9 (Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=AGT3 PE=1 SV=2)

HSP 1 Score: 165.2 bits (417), Expect = 5.4e-40
Identity = 77/116 (66.38%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 1   MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLVAVNEQNKLLQHATTIYLHHAIADFVEA 60
           MQYLFDE+GRRYLDAFAGI  V+CGHCHPDV+  V  Q K LQH T +YL+HAIADF EA
Sbjct: 88  MQYLFDESGRRYLDAFAGIAVVNCGHCHPDVVEPVINQIKRLQHPTVLYLNHAIADFSEA 147

Query: 61  LAAKIPGNLKVVYFVNSRTEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLT 117
           LA+K+PG+LKVV+F NS TEANELA++MA+LY+G   ++A+RN YHG ++ T+G T
Sbjct: 148 LASKLPGDLKVVFFTNSGTEANELALMMAKLYTGCQDIVAVRNGYHGNAAATMGAT 203

[Close]

BLAST of Lag0008631 vs. ExPASy Swiss-Prot
Match: Q9SR86 (Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g08860 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.4e-40
Identity = 75/121 (61.98%), Postives = 100/121 (82.64%), Query Frame = 0


Query: 1   MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLVAVNEQNKLLQHATTIYLHHAIADFVEA 60
           MQY+FDENGRRYLDAF GI TVSCGHCHP+V+ +V +Q KL+ H+T +YL+H I+DF EA
Sbjct: 91  MQYVFDENGRRYLDAFGGIATVSCGHCHPEVVNSVVKQLKLINHSTILYLNHTISDFAEA 150

Query: 61  LAAKIPGNLKVVYFVNSRTEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNT 120
           L + +PG+LKVV+F NS TEANELAM+MARLY+G   +++LRN+YHG ++ T+G TA + 
Sbjct: 151 LVSTLPGDLKVVFFTNSGTEANELAMMMARLYTGCNDIVSLRNSYHGNAAATMGATAQSN 210

Query: 121 Y 122
           +
Sbjct: 211 W 211

[Close]

BLAST of Lag0008631 vs. ExPASy Swiss-Prot
Match: Q5RFA3 (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Pongo abelii OX=9601 GN=AGXT2 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-30
Identity = 64/121 (52.89%), Postives = 84/121 (69.42%), Query Frame = 0


Query: 1   MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLVAVNEQNKLLQHATTIYLHHAIADFVEA 60
           M++LFD  G RYLD F+GIVTVS GHCHP V     +Q   L H +T++ H  + ++ E 
Sbjct: 93  MEWLFDAEGNRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEK 152

Query: 61  LAAKIPGNLKVVYFVNSRTEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNT 120
           LAA +P  LKV++ VNS +EANELAMLMAR +S N+ +I+ R AYHG S  T+GLT + T
Sbjct: 153 LAALLPEPLKVIFLVNSGSEANELAMLMARAHSNNIDIISFRGAYHGCSPYTLGLTNIGT 212

Query: 121 Y 122
           Y
Sbjct: 213 Y 213

[Close]

BLAST of Lag0008631 vs. ExPASy Swiss-Prot
Match: Q9BYV1 (Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens OX=9606 GN=AGXT2 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.1e-30
Identity = 64/121 (52.89%), Postives = 84/121 (69.42%), Query Frame = 0


Query: 1   MQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLVAVNEQNKLLQHATTIYLHHAIADFVEA 60
           M++LFD  G RYLD F+GIVTVS GHCHP V     +Q   L H +T++ H  + ++ E 
Sbjct: 93  MEWLFDAEGSRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTVFFHPPMHEYAEK 152

Query: 61  LAAKIPGNLKVVYFVNSRTEANELAMLMARLYSGNLGMIALRNAYHGGSSNTIGLTALNT 120
           LAA +P  LKV++ VNS +EANELAMLMAR +S N+ +I+ R AYHG S  T+GLT + T
Sbjct: 153 LAALLPEPLKVIFLVNSGSEANELAMLMARAHSNNIDIISFRGAYHGCSPYTLGLTNVGT 212

Query: 121 Y 122
           Y
Sbjct: 213 Y 213

The following BLAST results are available for this feature:

BLAST of Lag0008631 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941785.1	1.1e-58	95.87	alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like [Cucurbita ...	[more]
KAG7031256.1	1.1e-58	95.87	Alanine--glyoxylate aminotransferase 2-like 1, mitochondrial [Cucurbita argyrosp...	[more]
XP_022980667.1	1.1e-58	95.87	alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like [Cucurbita ...	[more]
XP_023541489.1	1.1e-58	95.87	alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like [Cucurbita ...	[more]
KAG6600622.1	2.5e-58	95.04	LRR receptor kinase BAK1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lag0008631 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940M2	2.1e-55	85.12	Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial OS=Arabidopsis t...	[more]
Q94AL9	5.4e-40	66.38	Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial OS=Arabidopsis t...	[more]
Q9SR86	5.4e-40	61.98	Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis t...	[more]
Q5RFA3	3.0e-30	52.89	Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Pongo abelii OX=9601 GN...	[more]
Q9BYV1	5.1e-30	52.89	Alanine--glyoxylate aminotransferase 2, mitochondrial OS=Homo sapiens OX=9606 GN...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015422	Pyridoxal phosphate-dependent transferase, small domain	GENE3D	3.90.1150.10	Aspartate Aminotransferase, domain 1	coord: 3..27 e-value: 2.1E-32 score: 114.6
IPR015421	Pyridoxal phosphate-dependent transferase, major domain	GENE3D	3.40.640.10		coord: 28..119 e-value: 2.1E-32 score: 114.6
IPR005814	Aminotransferase class-III	PFAM	PF00202	Aminotran_3	coord: 3..120 e-value: 1.2E-21 score: 76.8
None	No IPR available	PANTHER	PTHR45688	FAMILY NOT NAMED	coord: 1..121
None	No IPR available	PANTHER	PTHR45688:SF14	BNAC01G00550D PROTEIN	coord: 1..121
IPR015424	Pyridoxal phosphate-dependent transferase	SUPERFAMILY	53383	PLP-dependent transferases	coord: 3..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0008631.1	Lag0008631.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901566	organonitrogen compound biosynthetic process
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0008483	transaminase activity
molecular_function	GO:0003824	catalytic activity