Lag0008630 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0008630
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ethylene-responsive transcription factor ERF011-like
Location	chr9: 26787981 .. 26788481 (-)
RNA-Seq Expression	Lag0008630
Synteny	Lag0008630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGGGGAGAAGAACGGAAGAAGAATCAGCAGAATCAAAAACCGTACAAAGGCATAAGGATGAGAAAATGGGGGAAATGGGTCGCCGAGATTCGTGAGCCCAACAAACGCTCTAGAATTTGGCTCGGTTCCTACTCCTCCCCCCTCGCCGCCGCCCGTGCCTACGACACCGCCGTCTTCCACCTCCGCGGCCCCTCCGCCCGCCTCAATTTTCCACACTTTTTCACCGCCGCCGACCGCCCCTTCCCCCTCCCCTCCGACATCTCCGCTGCCGCCGTCCGCAAGATCGCCGCCGAGGTCGGCGCCCGTGTCGACGCCCTCCAGACCTCCCTCCGCCACCACTTTCATACCTCTACAAACTCCGACCAAACTCCTTCCCCCTCGCCGGTGAAGCTTCGTTCTGATTCCGGTGGGTTTTCCGACCGGGTCGACCTCAATAAACTTCCCGACCCGGAAGACTCCGATGGCGACTGCGCTACCACTCATTGGACTAGTTGA

mRNA sequence

ATGAAAGGGGGAGAAGAACGGAAGAAGAATCAGCAGAATCAAAAACCGTACAAAGGCATAAGGATGAGAAAATGGGGGAAATGGGTCGCCGAGATTCGTGAGCCCAACAAACGCTCTAGAATTTGGCTCGGTTCCTACTCCTCCCCCCTCGCCGCCGCCCGTGCCTACGACACCGCCGTCTTCCACCTCCGCGGCCCCTCCGCCCGCCTCAATTTTCCACACTTTTTCACCGCCGCCGACCGCCCCTTCCCCCTCCCCTCCGACATCTCCGCTGCCGCCGTCCGCAAGATCGCCGCCGAGGTCGGCGCCCGTGTCGACGCCCTCCAGACCTCCCTCCGCCACCACTTTCATACCTCTACAAACTCCGACCAAACTCCTTCCCCCTCGCCGGTGAAGCTTCGTTCTGATTCCGGTGGGTTTTCCGACCGGGTCGACCTCAATAAACTTCCCGACCCGGAAGACTCCGATGGCGACTGCGCTACCACTCATTGGACTAGTTGA

Coding sequence (CDS)

ATGAAAGGGGGAGAAGAACGGAAGAAGAATCAGCAGAATCAAAAACCGTACAAAGGCATAAGGATGAGAAAATGGGGGAAATGGGTCGCCGAGATTCGTGAGCCCAACAAACGCTCTAGAATTTGGCTCGGTTCCTACTCCTCCCCCCTCGCCGCCGCCCGTGCCTACGACACCGCCGTCTTCCACCTCCGCGGCCCCTCCGCCCGCCTCAATTTTCCACACTTTTTCACCGCCGCCGACCGCCCCTTCCCCCTCCCCTCCGACATCTCCGCTGCCGCCGTCCGCAAGATCGCCGCCGAGGTCGGCGCCCGTGTCGACGCCCTCCAGACCTCCCTCCGCCACCACTTTCATACCTCTACAAACTCCGACCAAACTCCTTCCCCCTCGCCGGTGAAGCTTCGTTCTGATTCCGGTGGGTTTTCCGACCGGGTCGACCTCAATAAACTTCCCGACCCGGAAGACTCCGATGGCGACTGCGCTACCACTCATTGGACTAGTTGA

Protein sequence

MKGGEERKKNQQNQKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPLAAARAYDTAVFHLRGPSARLNFPHFFTAADRPFPLPSDISAAAVRKIAAEVGARVDALQTSLRHHFHTSTNSDQTPSPSPVKLRSDSGGFSDRVDLNKLPDPEDSDGDCATTHWTS

Homology

[Close]

BLAST of Lag0008630 vs. NCBI nr
Match: XP_022947660.1 (ethylene-responsive transcription factor ERF011-like [Cucurbita moschata])

HSP 1 Score: 278.9 bits (712), Expect = 2.9e-71
Identity = 143/177 (80.79%), Postives = 154/177 (87.01%), Query Frame = 0


Query: 1   MKGGEERKKNQQNQKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPLAAARAYDTAV 60
           MKGGEE ++N++N KPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSP+AAARAYDTAV
Sbjct: 1   MKGGEEERRNRENTKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAV 60

Query: 61  FHLRGPSARLNFPHFFT--AADRPFPLPSDISAAAVRKIAAEVGARVDALQTSLRHHFHT 120
           FHLRGPSARLNFP FFT  AADRPFPLP+DISA+ VRKIAAEVGARVDAL++SLRHHFH 
Sbjct: 61  FHLRGPSARLNFPDFFTTAAADRPFPLPADISASTVRKIAAEVGARVDALESSLRHHFHN 120

Query: 121 STNSD---QTPSPS--------PVKLRSDSGGFSDRVDLNKLPDPEDSDGDCATTHW 165
              +D   QTPSPS        P KLRSDSGGFSDRVDLNKLPDPEDSDGDCA+T W
Sbjct: 121 CRTADQIHQTPSPSPATTTTTTPTKLRSDSGGFSDRVDLNKLPDPEDSDGDCASTPW 177

[Close]

BLAST of Lag0008630 vs. NCBI nr
Match: KAG6605215.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035189.1 Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278.9 bits (712), Expect = 2.9e-71
Identity = 143/177 (80.79%), Postives = 155/177 (87.57%), Query Frame = 0


Query: 1   MKGGEERKKNQQNQKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPLAAARAYDTAV 60
           MKGGEE ++N++N KPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSP+AAARAYDTAV
Sbjct: 1   MKGGEEERRNRENTKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAV 60

Query: 61  FHLRGPSARLNFPHFFT--AADRPFPLPSDISAAAVRKIAAEVGARVDALQTSLRHHFH- 120
           FHLRGPSARLNFP FFT  AADRPFPLP+DISA+ VRKIAAEVGARVDAL++SLRHHFH 
Sbjct: 61  FHLRGPSARLNFPDFFTTAAADRPFPLPADISASTVRKIAAEVGARVDALESSLRHHFHN 120

Query: 121 --TSTNSDQTPSPS--------PVKLRSDSGGFSDRVDLNKLPDPEDSDGDCATTHW 165
             T+  + QTPSPS        P KLRSDSGGFSDRVDLNKLPDPEDSDGDCA+T W
Sbjct: 121 CRTADQTHQTPSPSPATTTTTTPTKLRSDSGGFSDRVDLNKLPDPEDSDGDCASTPW 177

[Close]

BLAST of Lag0008630 vs. NCBI nr
Match: XP_023534076.1 (ethylene-responsive transcription factor ERF011-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 274.6 bits (701), Expect = 5.5e-70
Identity = 142/178 (79.78%), Postives = 153/178 (85.96%), Query Frame = 0


Query: 1   MKGGEERKKNQQNQKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPLAAARAYDTAV 60
           MKGGEE ++N++N KPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSP+AAARAYDTAV
Sbjct: 1   MKGGEEERRNRENTKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAV 60

Query: 61  FHLRGPSARLNFPHFFT--AADRPFPLPSDISAAAVRKIAAEVGARVDALQTSLRHHFHT 120
           FHLRGPSARLNFP FFT  AADRPFPLP+DISA+ VRKIAAEVGARVDAL++SLRHHFH 
Sbjct: 61  FHLRGPSARLNFPDFFTTAAADRPFPLPADISASTVRKIAAEVGARVDALESSLRHHFHN 120

Query: 121 STNSD------QTPSPS------PVKLRSDSGGFSDRVDLNKLPDPEDSDGDCATTHW 165
              +D      QTPS S      P KLRSDSGGFSDRVDLNKLPDPEDSDGDCA+T W
Sbjct: 121 CRTADQTHQTHQTPSLSPATTTTPTKLRSDSGGFSDRVDLNKLPDPEDSDGDCASTPW 178

[Close]

BLAST of Lag0008630 vs. NCBI nr
Match: XP_023006973.1 (ethylene-responsive transcription factor ERF011-like [Cucurbita maxima])

HSP 1 Score: 273.9 bits (699), Expect = 9.4e-70
Identity = 141/176 (80.11%), Postives = 153/176 (86.93%), Query Frame = 0


Query: 1   MKGGEERKKNQQNQKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPLAAARAYDTAV 60
           MKGGEE ++N++N KPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSP+AAARAYDTAV
Sbjct: 1   MKGGEEERRNRENTKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAV 60

Query: 61  FHLRGPSARLNFPHFFTAA---DRPFPLPSDISAAAVRKIAAEVGARVDALQTSLRHHFH 120
           FHLRGPSARLNFP FFTAA   DRPFP P+DISA+ VRKIAAEVGARVDAL++SLRHHFH
Sbjct: 61  FHLRGPSARLNFPDFFTAAAATDRPFPFPADISASTVRKIAAEVGARVDALESSLRHHFH 120

Query: 121 ---TSTNSDQTPSPS------PVKLRSDSGGFSDRVDLNKLPDPEDSDGDCATTHW 165
              T+  + QTPS S      P KLRSDSGGFSDRVDLNKLPDPEDSDGDCA+T W
Sbjct: 121 NCRTADQTHQTPSLSPTTTTTPTKLRSDSGGFSDRVDLNKLPDPEDSDGDCASTPW 176

[Close]

BLAST of Lag0008630 vs. NCBI nr
Match: XP_038900860.1 (ethylene-responsive transcription factor ERF008-like [Benincasa hispida] >XP_038900861.1 ethylene-responsive transcription factor ERF008-like [Benincasa hispida])

HSP 1 Score: 221.5 bits (563), Expect = 5.5e-54
Identity = 121/163 (74.23%), Postives = 135/163 (82.82%), Query Frame = 0


Query: 5   EERKKNQQNQKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPLAAARAYDTAVFHLR 64
           +E+ ++Q+  K +KGIRMRKWGKWVAEIREPNKRSRIWLGSYSSP+AAARAYD AVFHLR
Sbjct: 2   KEKNEDQKKLKQFKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDAAVFHLR 61

Query: 65  GPSARLNFPHFFTAADRPFPLPSDISAAAVRKIAAEVGARVDALQTSLRHHFHTSTNSDQ 124
           GPSARLNFP FF+  DR FPL    SAAAVRKIAAEVGARVDAL++SLRH  H++ +SD+
Sbjct: 62  GPSARLNFPDFFSTVDRSFPL----SAAAVRKIAAEVGARVDALESSLRH--HSAHSSDR 121

Query: 125 TPSPSPVKLR-SDSGGFSDRVDLNKLPDPEDSDGDCATTHWTS 167
           T      KLR S S GFSDRVDLNK PDPEDSDGDCATT  TS
Sbjct: 122 T-----TKLRSSSSSGFSDRVDLNKFPDPEDSDGDCATTPCTS 153

[Close]

BLAST of Lag0008630 vs. ExPASy Swiss-Prot
Match: Q9SW63 (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana OX=3702 GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-37
Identity = 93/173 (53.76%), Postives = 107/173 (61.85%), Query Frame = 0


Query: 11  QQNQKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPLAAARAYDTAVFHLRGPSARL 70
           ++  KPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYS+P AAARAYDTAVF+LRGPSARL
Sbjct: 24  RKRDKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARL 83

Query: 71  NFPHFFT------AADRPFPLPSDISAAAVRKIAAEVGARVDALQTS-------LRHHFH 130
           NFP                    D+SAA +R+ AAEVGA+VDAL+ +         HH H
Sbjct: 84  NFPELLAGVTVTGGGGGGVNGGGDMSAAYIRRKAAEVGAQVDALEAAGAGGNRHHHHHQH 143

Query: 131 TSTNSDQTPSPSPVKLRSD------------SGGFSDRVDLNKLPDPEDSDGD 159
              N D   + S  ++  D              G  +RVDLNKLPDPE SD D
Sbjct: 144 QRGNHDYVDNHSDYRINDDLMECSSKEGFKRCNGSLERVDLNKLPDPETSDDD 196

[Close]

BLAST of Lag0008630 vs. ExPASy Swiss-Prot
Match: O22174 (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana OX=3702 GN=ERF008 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.2e-37
Identity = 88/150 (58.67%), Postives = 104/150 (69.33%), Query Frame = 0


Query: 11  QQNQKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPLAAARAYDTAVFHLRGPSARL 70
           +++ KPYKGIRMRKWGKWVAEIREPNKRSRIWLGSY++P AAARAYDTAVF+LRGPSARL
Sbjct: 22  KRDLKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSARL 81

Query: 71  NFPHFFT--AADRPFPLPSDISAAAVRKIAAEVGARVDALQTSLRHHFHTSTNSDQTPSP 130
           NFP                D+SAA +R+ AAEVGA+VDAL  ++  +       D     
Sbjct: 82  NFPELLAGLTVSNGGGRGGDLSAAYIRRKAAEVGAQVDALGATVVVNTGGENRGDYEKIE 141

Query: 131 SPVKLRSDSGGFSDRVDLNKLPDPEDSDGD 159
           +    R    G  +RVDLNKLPDPE+SDGD
Sbjct: 142 N---CRKSGNGSLERVDLNKLPDPENSDGD 168

[Close]

BLAST of Lag0008630 vs. ExPASy Swiss-Prot
Match: Q9FH94 (Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana OX=3702 GN=ERF010 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.9e-37
Identity = 89/174 (51.15%), Postives = 109/174 (62.64%), Query Frame = 0


Query: 11  QQNQKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPLAAARAYDTAVFHLRGPSARL 70
           ++  +PYKGIRMRKWGKWVAEIREPNKRSR+WLGSYS+P AAARAYDTAVF+LRGP+ARL
Sbjct: 15  RKRDRPYKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTARL 74

Query: 71  NFPHFFTAADRPFPLPSDISAAAVRKIAAEVGARVDALQTSLRHHFH------------- 130
           NFP              D+SAA +RK A EVGA+VDAL T+++++ H             
Sbjct: 75  NFPELLPGEKFS---DEDMSAATIRKKATEVGAQVDALGTAVQNNRHRVFGQNRDSDVDN 134

Query: 131 --------TSTNSDQTPSPSPVKLRSDSGGFSDRVDLNKLPDPEDSDGDCATTH 164
                        ++       +LRS  G   DRVDLNKLPDPE SD +  + H
Sbjct: 135 KNFHRNYQNGEREEEEEDEDDKRLRS-GGRLLDRVDLNKLPDPESSDEEWESKH 184

[Close]

BLAST of Lag0008630 vs. ExPASy Swiss-Prot
Match: Q9SNE1 (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana OX=3702 GN=ERF011 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-34
Identity = 82/147 (55.78%), Postives = 99/147 (67.35%), Query Frame = 0


Query: 12  QNQKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPLAAARAYDTAVFHLRGPSARLN 71
           + ++P+KGIRMRKWGKWVAEIREPNKRSR+WLGSYS+P AAARAYDTAVF+LRGP+A LN
Sbjct: 16  KRERPFKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLN 75

Query: 72  FPHFFTAADRPFPLPSDISAAAVRKIAAEVGARVDALQTSLRHHFHTSTNSDQTPSPSPV 131
           FP        P     D+SAA +RK A EVGA+VDA+  ++  +        Q       
Sbjct: 76  FPELL-----PCTSAEDMSAATIRKKATEVGAQVDAIGATVVQNNKRRRVFSQK------ 135

Query: 132 KLRSDSGGFSDRVDLNKLPDPEDSDGD 159
             R   GG  + VDLNKLPDPE+ D D
Sbjct: 136 --RDFGGGLLELVDLNKLPDPENLDDD 149

[Close]

BLAST of Lag0008630 vs. ExPASy Swiss-Prot
Match: Q8W3M3 (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana OX=3702 GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.4e-30
Identity = 73/106 (68.87%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 5   EERKKN--QQNQKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPLAAARAYDTAVFH 64
           E+ K+N    N+K YKGIRMRKWGKWVAEIREPNKRSRIWLGSY + +AAARAYDTAVF+
Sbjct: 22  EKPKRNLISSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFY 81

Query: 65  LRGPSARLNFP-HFFTAADRPFPLPSDISAAAVRKIAAEVGARVDA 108
           LRGPSARLNFP   F   +    L  D+S   +RK AAEVGARVDA
Sbjct: 82  LRGPSARLNFPEEVFKDGNGGEGLGGDMSPTLIRKKAAEVGARVDA 127

The following BLAST results are available for this feature:

BLAST of Lag0008630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947660.1	2.9e-71	80.79	ethylene-responsive transcription factor ERF011-like [Cucurbita moschata]	[more]
KAG6605215.1	2.9e-71	80.79	Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
XP_023534076.1	5.5e-70	79.78	ethylene-responsive transcription factor ERF011-like [Cucurbita pepo subsp. pepo...	[more]
XP_023006973.1	9.4e-70	80.11	ethylene-responsive transcription factor ERF011-like [Cucurbita maxima]	[more]
XP_038900860.1	5.5e-54	74.23	ethylene-responsive transcription factor ERF008-like [Benincasa hispida] >XP_038...	[more]

BLAST of Lag0008630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SW63	1.3e-37	53.76	Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana OX=3702...	[more]
O22174	2.2e-37	58.67	Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9FH94	4.9e-37	51.15	Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SNE1	1.3e-34	55.78	Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q8W3M3	3.4e-30	68.87	Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana OX=3702 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 55..75 score: 51.6 coord: 17..28 score: 56.36
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 16..79 e-value: 2.8E-34 score: 129.9
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 17..65 e-value: 7.2E-11 score: 42.2
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 16..73 score: 21.93071
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 17..74 e-value: 4.61921E-27 score: 94.6458
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 15..74 e-value: 8.6E-24 score: 85.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..158
None	No IPR available	PANTHER	PTHR31729	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED	coord: 6..156
None	No IPR available	PANTHER	PTHR31729:SF0	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10	coord: 6..156
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 16..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0008630.1	Lag0008630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity