Lag0008596 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTTCAAGACTTCTTCAATGATTGTTGTCATGAGTAACTTTTACACGGGTCCTACCATTCATAGTTGCTCTGATGAACTCAAGTTGCAAGATGATAAAACTCTTATTATCATGAGTGAAGGAATAACACTACAAGGGACATGTACTGATGAAAAGTTTCTTGTTAAGTACAACCCTTTGTTCAAACTCGATGCTGACATAGTAACCGTTATGATGACTGAGACAAAAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCAGATCAACATCTTGATGAAGGCAATCGAAGAAAAAGATTCTCAAATCAAGCATCTAAAGAGCCAGATTGAGAATCAAAACATTGTTGAATCGAGTCATACTCATGTTGTCAAAAATCAAGACAAAGGGAAGACTGTAGTGCAAGACGATTAG ATGTCTTTCAAGACTTCTTCAATGATTGTTGTCATGAGTAACTTTTACACGGGTCCTACCATTCATAGTTGCTCTGATGAACTCAAGTTGCAAGATGATAAAACTCTTATTATCATGAGTGAAGGAATAACACTACAAGGGACATGTACTGATGAAAAGTTTCTTGTTAAGTACAACCCTTTGTTCAAACTCGATGCTGACATAGTAACCGTTATGATGACTGAGACAAAAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCAGATCAACATCTTGATGAAGGCAATCGAAGAAAAAGATTCTCAAATCAAGCATCTAAAGAGCCAGATTGAGAATCAAAACATTGTTGAATCGAGTCATACTCATGTTGTCAAAAATCAAGACAAAGGGAAGACTGTAGTGCAAGACGATTAG ATGTCTTTCAAGACTTCTTCAATGATTGTTGTCATGAGTAACTTTTACACGGGTCCTACCATTCATAGTTGCTCTGATGAACTCAAGTTGCAAGATGATAAAACTCTTATTATCATGAGTGAAGGAATAACACTACAAGGGACATGTACTGATGAAAAGTTTCTTGTTAAGTACAACCCTTTGTTCAAACTCGATGCTGACATAGTAACCGTTATGATGACTGAGACAAAAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCAGATCAACATCTTGATGAAGGCAATCGAAGAAAAAGATTCTCAAATCAAGCATCTAAAGAGCCAGATTGAGAATCAAAACATTGTTGAATCGAGTCATACTCATGTTGTCAAAAATCAAGACAAAGGGAAGACTGTAGTGCAAGACGATTAG MSFKTSSMIVVMSNFYTGPTIHSCSDELKLQDDKTLIIMSEGITLQGTCTDEKFLVKYNPLFKLDADIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVKNQDKGKTVVQDD Homology
BLAST of Lag0008596 vs. NCBI nr
Match: TYK07338.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 76.3 bits (186), Expect = 2.4e-10 Identity = 36/71 (50.70%), Postives = 57/71 (80.28%), Query Frame = 0
BLAST of Lag0008596 vs. NCBI nr
Match: KAA0051086.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK12104.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 75.5 bits (184), Expect = 4.1e-10 Identity = 37/71 (52.11%), Postives = 57/71 (80.28%), Query Frame = 0
BLAST of Lag0008596 vs. NCBI nr
Match: KAA0051994.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 75.1 bits (183), Expect = 5.3e-10 Identity = 34/71 (47.89%), Postives = 60/71 (84.51%), Query Frame = 0
BLAST of Lag0008596 vs. NCBI nr
Match: TYK03695.1 (retrotransposon gag protein [Cucumis melo var. makuwa]) HSP 1 Score: 73.9 bits (180), Expect = 1.2e-09 Identity = 47/133 (35.34%), Postives = 76/133 (57.14%), Query Frame = 0
BLAST of Lag0008596 vs. NCBI nr
Match: KAA0060505.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09 Identity = 37/71 (52.11%), Postives = 55/71 (77.46%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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