Lag0008596 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0008596
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr9: 26110810 .. 26111226 (-)
RNA-Seq ExpressionLag0008596
SyntenyLag0008596
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTCAAGACTTCTTCAATGATTGTTGTCATGAGTAACTTTTACACGGGTCCTACCATTCATAGTTGCTCTGATGAACTCAAGTTGCAAGATGATAAAACTCTTATTATCATGAGTGAAGGAATAACACTACAAGGGACATGTACTGATGAAAAGTTTCTTGTTAAGTACAACCCTTTGTTCAAACTCGATGCTGACATAGTAACCGTTATGATGACTGAGACAAAAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCAGATCAACATCTTGATGAAGGCAATCGAAGAAAAAGATTCTCAAATCAAGCATCTAAAGAGCCAGATTGAGAATCAAAACATTGTTGAATCGAGTCATACTCATGTTGTCAAAAATCAAGACAAAGGGAAGACTGTAGTGCAAGACGATTAG

mRNA sequence

ATGTCTTTCAAGACTTCTTCAATGATTGTTGTCATGAGTAACTTTTACACGGGTCCTACCATTCATAGTTGCTCTGATGAACTCAAGTTGCAAGATGATAAAACTCTTATTATCATGAGTGAAGGAATAACACTACAAGGGACATGTACTGATGAAAAGTTTCTTGTTAAGTACAACCCTTTGTTCAAACTCGATGCTGACATAGTAACCGTTATGATGACTGAGACAAAAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCAGATCAACATCTTGATGAAGGCAATCGAAGAAAAAGATTCTCAAATCAAGCATCTAAAGAGCCAGATTGAGAATCAAAACATTGTTGAATCGAGTCATACTCATGTTGTCAAAAATCAAGACAAAGGGAAGACTGTAGTGCAAGACGATTAG

Coding sequence (CDS)

ATGTCTTTCAAGACTTCTTCAATGATTGTTGTCATGAGTAACTTTTACACGGGTCCTACCATTCATAGTTGCTCTGATGAACTCAAGTTGCAAGATGATAAAACTCTTATTATCATGAGTGAAGGAATAACACTACAAGGGACATGTACTGATGAAAAGTTTCTTGTTAAGTACAACCCTTTGTTCAAACTCGATGCTGACATAGTAACCGTTATGATGACTGAGACAAAAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCAGATCAACATCTTGATGAAGGCAATCGAAGAAAAAGATTCTCAAATCAAGCATCTAAAGAGCCAGATTGAGAATCAAAACATTGTTGAATCGAGTCATACTCATGTTGTCAAAAATCAAGACAAAGGGAAGACTGTAGTGCAAGACGATTAG

Protein sequence

MSFKTSSMIVVMSNFYTGPTIHSCSDELKLQDDKTLIIMSEGITLQGTCTDEKFLVKYNPLFKLDADIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVKNQDKGKTVVQDD
Homology
BLAST of Lag0008596 vs. NCBI nr
Match: TYK07338.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-10
Identity = 36/71 (50.70%), Postives = 57/71 (80.28%), Query Frame = 0

Query: 67  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVK 126
           +I++VM+T+  T E RM E+++++N+LMKA+EE+D +I  LK+ IE+ +  ESSHTH +K
Sbjct: 80  NIMSVMVTDVDTSENRMAELEKKVNMLMKAVEERDYEIASLKNHIESHDAAESSHTHTIK 139

Query: 127 NQDKGKTVVQD 138
           N DKGKT++Q+
Sbjct: 140 NVDKGKTIIQE 150

BLAST of Lag0008596 vs. NCBI nr
Match: KAA0051086.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK12104.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 4.1e-10
Identity = 37/71 (52.11%), Postives = 57/71 (80.28%), Query Frame = 0

Query: 67  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVK 126
           +I+ VM+T+  T   RM +++++INILMKA+EE+D +I  LK+ IE++N+VESSHTH +K
Sbjct: 80  NIMLVMVTDADTSVNRMTKLEKKINILMKAVEERDYEIASLKNHIESRNVVESSHTHTIK 139

Query: 127 NQDKGKTVVQD 138
           N DKGK ++Q+
Sbjct: 140 NVDKGKAIMQE 150

BLAST of Lag0008596 vs. NCBI nr
Match: KAA0051994.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 5.3e-10
Identity = 34/71 (47.89%), Postives = 60/71 (84.51%), Query Frame = 0

Query: 67  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVK 126
           +I++VM+T+  T E+RM E+++++N+LMKA+EE+D +I  LK+ IE+++ +ESSHTH++K
Sbjct: 80  NIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIASLKNHIESRDAIESSHTHIIK 139

Query: 127 NQDKGKTVVQD 138
           N +KGK ++Q+
Sbjct: 140 NVNKGKAIMQE 150

BLAST of Lag0008596 vs. NCBI nr
Match: TYK03695.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-09
Identity = 47/133 (35.34%), Postives = 76/133 (57.14%), Query Frame = 0

Query: 19  PTIHSCSDELKLQDDKTLIIMSEGITLQGTCTDE-KFLVKYNPLFK-------------L 78
           P  HSCS E++  +D     +++ I  Q +   +   ++K NP                 
Sbjct: 18  PNTHSCSREIQSFEDMPPFEVAKNIWEQISKPPKGGIVIKENPAVDEHNSLSECSNEEVP 77

Query: 79  DADIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHV 138
             +I++VM+T   T E RM E+++++N+LMK +EE+D +I  LK+ IE+++  ESSH H 
Sbjct: 78  QPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHT 137

BLAST of Lag0008596 vs. NCBI nr
Match: KAA0060505.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09
Identity = 37/71 (52.11%), Postives = 55/71 (77.46%), Query Frame = 0

Query: 67  DIVTVMMTETKTMEERMVEMQEQINILMKAIEEKDSQIKHLKSQIENQNIVESSHTHVVK 126
           +I++VM+T   T E RMVE++E++N+LMK +EE+D +I  LK+ IE+++  ESSH H VK
Sbjct: 80  NIMSVMVTNVDTSENRMVELEEKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVK 139

Query: 127 NQDKGKTVVQD 138
           N DKGK V+Q+
Sbjct: 140 NTDKGKAVMQE 150

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK07338.12.4e-1050.70ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0051086.14.1e-1052.11ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK12104.1 ty3-gyp... [more]
KAA0051994.15.3e-1047.89ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gyp... [more]
TYK03695.11.2e-0935.34retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0060505.11.5e-0952.11ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 76..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0008596.1Lag0008596.1mRNA