Lag0008595 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0008595
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotransposon gag protein
Location	chr9: 26108041 .. 26109446 (-)
RNA-Seq Expression	Lag0008595
Synteny	Lag0008595

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGGCGTCCACCTTCACTCGACCTTCGGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAATCGACCTTCAACATCTGTTTTTATTGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGGCAACTTGGAGGTGAAGCTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCATAGTAGCATCCTGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATATAGAAGGTTCCTTGAAAGTGAAGCCAAATCTCATTATCTTGATCAATCCTATAAATGAAGGATATCAAGATCATGATAAAGATAAGAGCTTTTAAAATGTGAAAACTCCTTATCGCAAGAGCCTAAACTGCATAATGCTCCTAGCCGACATGAGCTTAAAAGGTGAACGAAAAAAAAAAAACCTGAACTACGTTATGACTTGATCCAGTTTCTTTAAGGGTACGTAAGTAGCTTAAAGAAAACTTTAAGTTCAGTCCTTGCAAAAAAAAGGTGCCACAAATATTGAAGCACGACAATAGAAATTGAAGAAATTCATCACTATTGGGGGCAAAAAAGCAAATTAAAGATGTGCACCAACTATGAATGAGATGCTACAAGTTGGATGAGTAAAAAAAAAAGGCTTCATTCCTCCAAGTTTGATGTCTCGCACGTCTAGAGTTTGGTGTTCCATTCACCTTAAGTTTTGGTTCTCCTTCTTTAAGTTAGAAGGTGGTTCTCTTCGTTGCTGCTCCGCTGAGGTTCTCCTTCATCAAGTTCAAAGAGGGTTCTCTCTGTTGTTGCTTTGTAAGGTTCTCATTCATCAAGTTTGAAGAGGGTTCTCTCCGCTATTGCTCTGCTAAGGTTCTCTTTCTTCAAGTTCGAAGGTGGTTCTCTTCGCCAAGGTTCTCCTTCTCCAAGTTCGAAGGTAGTTCCCTCTAGTGTGATGCTCTTTCTCCAAGTTTGAAGGTTTGCCACTGTGATTCTCCTTCTCCAAGTTCGAAGGTTCATCATTGCCCCTCCTCCAAATCGAGGGTTCTTCATTGTGGTTCCCTTTCTCCAAGTTCGAAGGTTTTATAACTCCATTTAAAAGTTGGGAGGTTTCGCCATTATTTTGTCTCTTAGAGTTGTCGCTCTGACTTTGCTTCAACTTCAAAGGTTGACGGTTGATGACTTTGGTCTCGCTTCATCTCCAAAGTTGACGGCGACTGACATCATTGCTTCATCTTCAAAGTTAACGACGACTGACGGTGTTGCTTCATCTTTAAAGTTGGCAGCGGTTGACGACCCTCTTCATTTTAAAAGTTGGCAGTGGTTGACGACCCCTCTTCATTTTAAAAGTTGGTGGCAGTTGATGGCGTCGCTTCATCTTAAAAGTTGGCCTCGCTTCATTTTCAAAGTTGGCGGCGATTGA

mRNA sequence

ATGTTCGGCGTCCACCTTCACTCGACCTTCGGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAATCGACCTTCAACATCTGTTTTTATTGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGGCAACTTGGAGGTGAAGCTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCATAGTAGCATCCTGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATATAGAAGGTTCTCATTCATCAAGTTTGAAGAGGGTTCTCTCCGCTATTGCTCTGCTAAGGTTTGCCACTGTGATTCTCCTTCTCCAAGTTCGAAGGTTCATCATTGCCCCTCCTCCAAATCGAGGGTTCTTCATTGTGGTTCCCTTTCTCCAAGTTCGAAGGTTGACGGTTGATGACTTTGGTCTCGCTTCATCTCCAAAGTTGACGGCGACTGACATCATTGCTTCATCTTCAAAGTTAACGACGACTGACGGTGTTGCTTCATCTTTAAAGTTGGCAGCGGTTGACGACCCTCTTCATTTTAAAAGTTGGCAGTGGTTGACGACCCCTCTTCATTTTAAAAGTTGGTGGCAGTTGATGGCGTCGCTTCATCTTAAAAGTTGGCCTCGCTTCATTTTCAAAGTTGGCGGCGATTGA

Coding sequence (CDS)

ATGTTCGGCGTCCACCTTCACTCGACCTTCGGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAATCGACCTTCAACATCTGTTTTTATTGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGGCAACTTGGAGGTGAAGCTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCATAGTAGCATCCTGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATATAGAAGGTTCTCATTCATCAAGTTTGAAGAGGGTTCTCTCCGCTATTGCTCTGCTAAGGTTTGCCACTGTGATTCTCCTTCTCCAAGTTCGAAGGTTCATCATTGCCCCTCCTCCAAATCGAGGGTTCTTCATTGTGGTTCCCTTTCTCCAAGTTCGAAGGTTGACGGTTGATGACTTTGGTCTCGCTTCATCTCCAAAGTTGACGGCGACTGACATCATTGCTTCATCTTCAAAGTTAACGACGACTGACGGTGTTGCTTCATCTTTAAAGTTGGCAGCGGTTGACGACCCTCTTCATTTTAAAAGTTGGCAGTGGTTGACGACCCCTCTTCATTTTAAAAGTTGGTGGCAGTTGATGGCGTCGCTTCATCTTAAAAGTTGGCCTCGCTTCATTTTCAAAGTTGGCGGCGATTGA

Protein sequence

MFGVHLHSTFGFPKTKCLHIEEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLSAIALLRFATVILLLQVRRFIIAPPPNRGFFIVVPFLQVRRLTVDDFGLASSPKLTATDIIASSSKLTTTDGVASSLKLAAVDDPLHFKSWQWLTTPLHFKSWWQLMASLHLKSWPRFIFKVGGD

Homology

[Close]

BLAST of Lag0008595 vs. NCBI nr
Match: KAA0051997.1 (hypothetical protein E6C27_scaffold60G004810 [Cucumis melo var. makuwa] >TYK04562.1 hypothetical protein E5676_scaffold409G001950 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-08
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 1  MFGVHLHSTFGFPKTKCLHIEEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKK 60
          M  ++LH  F F KTK    ++       F  LK+T DQ +R+M +L+VK F E N D K
Sbjct: 1  MSNIYLHPNFSFQKTKYSTSKKARPSTSAFDRLKMTKDQQQREMKSLKVKSFHEENDDDK 60

Query: 61 LHSSILSRMKRKFSVLINIEGSHSSSLKRVLSAIALL 98
          +HS + SRMKRK SV IN EG+ S   + V     LL
Sbjct: 61 IHSRVPSRMKRKLSVDINTEGAASPLFQNVDQRTLLL 97

[Close]

BLAST of Lag0008595 vs. NCBI nr
Match: TYK30948.1 (hypothetical protein E5676_scaffold455G001730 [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 7.8e-08
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 1  MFGVHLHSTFGFPKTKCLHIEEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKK 60
          M  V+ HS F F K K LHIEE       F  LK+T+DQ +R+M  L+ K F E N+D K
Sbjct: 1  MSNVYFHSNFSFQKAKYLHIEEDRPSTSTFDHLKMTNDQHQREMKILKAKRFHEENNDDK 60

Query: 61 LHSSILSRMKRKFSVLINIEGSHSSSLKRVLSA 94
          ++S + S MKRK  V IN + + SSS   ++++
Sbjct: 61 IYSRVSSSMKRKLYVDINQKLASSSSRNFIVAS 93

[Close]

BLAST of Lag0008595 vs. NCBI nr
Match: TYK19591.1 (hypothetical protein E5676_scaffold1274G00410 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 3.3e-06
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 21  EEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIE 80
           ++ STF   F CLK+T++Q +R+M +L+VK F E N+D ++HS + SRMKRK SV+IN +
Sbjct: 125 DQPSTF--AFNCLKMTNNQQQRQMKSLKVKPFHEENNDDEIHSHVSSRMKRKLSVVINTK 184

Query: 81  GSHSSSLKRVLSAIALL 98
           G+ S  L+ V     LL
Sbjct: 185 GATSPLLENVDQRTLLL 199

[Close]

BLAST of Lag0008595 vs. NCBI nr
Match: KAA0061611.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 7.3e-06
Identity = 45/102 (44.12%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 33  LKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLS 92
           LK+T DQ +R+M +L+ K F E N D K+HS + SRMKRK SV IN EG+ S  L+ V  
Sbjct: 376 LKMTDDQKQREMKSLKAKPFCEENDDDKIHSCVPSRMKRKLSVDINTEGAVSPLLQNVDQ 435

Query: 93  AIALLRFATVILLLQVRRFIIAPPPNRGFFIVVPFLQVRRLT 135
              LL       +LQ R F    P    FFI    LQ+R L+
Sbjct: 436 RTLLL-----FDMLQTRIFPCVVPKRIFFFIFSHVLQLRDLS 472

[Close]

BLAST of Lag0008595 vs. NCBI nr
Match: KAA0035697.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30849.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 2.8e-05
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 14  KTKCLHIEEKS-TFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRK 73
           K  C+ I +K       F  LK+T+DQ +++M  L+ K F E N+D K+HS +LSRMKRK
Sbjct: 230 KRLCISISKKDRPSTSAFDRLKMTNDQQQKEMKTLKAKSFYEENNDDKIHSHVLSRMKRK 289

Query: 74  FSVLINIEGS 83
            SV IN EGS
Sbjct: 290 LSVDINTEGS 299

[Close]

BLAST of Lag0008595 vs. ExPASy TrEMBL
Match: A0A5A7UC34 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001950 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 1  MFGVHLHSTFGFPKTKCLHIEEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKK 60
          M  ++LH  F F KTK    ++       F  LK+T DQ +R+M +L+VK F E N D K
Sbjct: 1  MSNIYLHPNFSFQKTKYSTSKKARPSTSAFDRLKMTKDQQQREMKSLKVKSFHEENDDDK 60

Query: 61 LHSSILSRMKRKFSVLINIEGSHSSSLKRVLSAIALL 98
          +HS + SRMKRK SV IN EG+ S   + V     LL
Sbjct: 61 IHSRVPSRMKRKLSVDINTEGAASPLFQNVDQRTLLL 97

[Close]

BLAST of Lag0008595 vs. ExPASy TrEMBL
Match: A0A5D3E580 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001730 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.8e-08
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 1  MFGVHLHSTFGFPKTKCLHIEEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKK 60
          M  V+ HS F F K K LHIEE       F  LK+T+DQ +R+M  L+ K F E N+D K
Sbjct: 1  MSNVYFHSNFSFQKAKYLHIEEDRPSTSTFDHLKMTNDQHQREMKILKAKRFHEENNDDK 60

Query: 61 LHSSILSRMKRKFSVLINIEGSHSSSLKRVLSA 94
          ++S + S MKRK  V IN + + SSS   ++++
Sbjct: 61 IYSRVSSSMKRKLYVDINQKLASSSSRNFIVAS 93

[Close]

BLAST of Lag0008595 vs. ExPASy TrEMBL
Match: A0A5D3D7Q8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1274G00410 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-06
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 21  EEKSTFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIE 80
           ++ STF   F CLK+T++Q +R+M +L+VK F E N+D ++HS + SRMKRK SV+IN +
Sbjct: 125 DQPSTF--AFNCLKMTNNQQQRQMKSLKVKPFHEENNDDEIHSHVSSRMKRKLSVVINTK 184

Query: 81  GSHSSSLKRVLSAIALL 98
           G+ S  L+ V     LL
Sbjct: 185 GATSPLLENVDQRTLLL 199

[Close]

BLAST of Lag0008595 vs. ExPASy TrEMBL
Match: A0A5A7V7A0 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001760 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.5e-06
Identity = 45/102 (44.12%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 33  LKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINIEGSHSSSLKRVLS 92
           LK+T DQ +R+M +L+ K F E N D K+HS + SRMKRK SV IN EG+ S  L+ V  
Sbjct: 376 LKMTDDQKQREMKSLKAKPFCEENDDDKIHSCVPSRMKRKLSVDINTEGAVSPLLQNVDQ 435

Query: 93  AIALLRFATVILLLQVRRFIIAPPPNRGFFIVVPFLQVRRLT 135
              LL       +LQ R F    P    FFI    LQ+R L+
Sbjct: 436 RTLLL-----FDMLQTRIFPCVVPKRIFFFIFSHVLQLRDLS 472

[Close]

BLAST of Lag0008595 vs. ExPASy TrEMBL
Match: A0A5D3E4T1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00460 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 14  KTKCLHIEEKS-TFNICFYCLKVTSDQPKRKMGNLEVKLFDEVNSDKKLHSSILSRMKRK 73
           K  C+ I +K       F  LK+T+DQ +++M  L+ K F E N+D K+HS +LSRMKRK
Sbjct: 230 KRLCISISKKDRPSTSAFDRLKMTNDQQQKEMKTLKAKSFYEENNDDKIHSHVLSRMKRK 289

Query: 74  FSVLINIEGS 83
            SV IN EGS
Sbjct: 290 LSVDINTEGS 299

The following BLAST results are available for this feature:

BLAST of Lag0008595 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051997.1	2.7e-08	43.30	hypothetical protein E6C27_scaffold60G004810 [Cucumis melo var. makuwa] >TYK0456...	[more]
TYK30948.1	7.8e-08	43.01	hypothetical protein E5676_scaffold455G001730 [Cucumis melo var. makuwa]	[more]
TYK19591.1	3.3e-06	46.75	hypothetical protein E5676_scaffold1274G00410 [Cucumis melo var. makuwa]	[more]
KAA0061611.1	7.3e-06	44.12	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0035697.1	2.8e-05	48.57	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30849.1 retrotranspos...	[more]

BLAST of Lag0008595 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0008595 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC34	1.3e-08	43.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E580	3.8e-08	43.01	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D7Q8	1.6e-06	46.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V7A0	3.5e-06	44.12	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3E4T1	1.3e-05	48.57	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Lag0008595 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0008595.1	Lag0008595.1	mRNA