Lag0008527 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0008527
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr9: 24522833 .. 24523529 (+)
RNA-Seq ExpressionLag0008527
SyntenyLag0008527
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGGAAAGCTGAGAAGAAGGCTGGATGATAGATTGAAGGGATGGGCTGGGCGATTCCTATCGCAAGCAAGAAAGGATGTGTTGGTAAAGGTTGTGGCTCTTGCTATTCCAGTGTATACCATGAATTGTTTTAAGCTACCAATGTTAGTTTGCAAGGAGATCAATAGTAAGTTGGCAGCCTTTTGGTGGAAGACAAAGAAAGAGGGGAACGAGATTCATTGGGGTCCATGGAACGAGCTCTCGAAACATAAGAGTAGAAGAGGGGTTGAATTTTAAGGAGTTGGGTTACTTCAATTTAGCTCTTCTAGCAAAGCAAGGATGGAGGATTCTTACAAAGTCGGACAGTTGGGTGGCAATAATATATAAGGCGAAGTACTTGCGGCAAAAGTCATTTCTAGAGGTGGAAGCTGGGGATTCGGCTTTGTGGGGTTGGAAGAGTATTTTGGCTGGCAGGGTTGTCTTGAGGCAAGGGGTCCGATGGAGCATTGGGGTAAACCCTGAGGTAGACATTTGGCGTGATTCTTGGCTTCCACGACCGTTCACCTTCAGGCCGATGAGGTGCCTAGACGATGAATGGCAGATGGCTATTGAATTCATAGATGGTAGTGGCCCAAAATGGAATGAGAAGCGTCTAAGGAAATGTCTTGTGGGTGAGGATGTGGAGATGACGTTGGCAATCCCTTTAAGTAGTTAG

mRNA sequence

ATGGTCGGAAAGCTGAGAAGAAGGCTGGATGATAGATTGAAGGGATGGGCTGGGCGATTCCTATCGCAAGCAAGAAAGGATGTGTTGGTAAAGGTTGTGGCTCTTGCTATTCCAGTGTATACCATGAATTGTTTTAAGCTACCAATGTTAGTTTGCAAGGAGATCAATACTCTTCTAGCAAAGCAAGGATGGAGGATTCTTACAAAGTCGGACAGTTGGGTGGCAATAATATATAAGGCGAAGTACTTGCGGCAAAAGTCATTTCTAGAGGTGGAAGCTGGGGATTCGGCTTTGTGGGGTTGGAAGAGTATTTTGGCTGGCAGGGTTGTCTTGAGGCAAGGGGTCCGATGGAGCATTGGGGTAAACCCTGAGGTAGACATTTGGCGTGATTCTTGGCTTCCACGACCGTTCACCTTCAGGCCGATGAGGTGCCTAGACGATGAATGGCAGATGGCTATTGAATTCATAGATGGTAGTGGCCCAAAATGGAATGAGAAGCGTCTAAGGAAATGTCTTGTGGGTGAGGATGTGGAGATGACGTTGGCAATCCCTTTAAGTAGTTAG

Coding sequence (CDS)

ATGGTCGGAAAGCTGAGAAGAAGGCTGGATGATAGATTGAAGGGATGGGCTGGGCGATTCCTATCGCAAGCAAGAAAGGATGTGTTGGTAAAGGTTGTGGCTCTTGCTATTCCAGTGTATACCATGAATTGTTTTAAGCTACCAATGTTAGTTTGCAAGGAGATCAATACTCTTCTAGCAAAGCAAGGATGGAGGATTCTTACAAAGTCGGACAGTTGGGTGGCAATAATATATAAGGCGAAGTACTTGCGGCAAAAGTCATTTCTAGAGGTGGAAGCTGGGGATTCGGCTTTGTGGGGTTGGAAGAGTATTTTGGCTGGCAGGGTTGTCTTGAGGCAAGGGGTCCGATGGAGCATTGGGGTAAACCCTGAGGTAGACATTTGGCGTGATTCTTGGCTTCCACGACCGTTCACCTTCAGGCCGATGAGGTGCCTAGACGATGAATGGCAGATGGCTATTGAATTCATAGATGGTAGTGGCCCAAAATGGAATGAGAAGCGTCTAAGGAAATGTCTTGTGGGTGAGGATGTGGAGATGACGTTGGCAATCCCTTTAAGTAGTTAG

Protein sequence

MVGKLRRRLDDRLKGWAGRFLSQARKDVLVKVVALAIPVYTMNCFKLPMLVCKEINTLLAKQGWRILTKSDSWVAIIYKAKYLRQKSFLEVEAGDSALWGWKSILAGRVVLRQGVRWSIGVNPEVDIWRDSWLPRPFTFRPMRCLDDEWQMAIEFIDGSGPKWNEKRLRKCLVGEDVEMTLAIPLSS
Homology
BLAST of Lag0008527 vs. NCBI nr
Match: CAB4274760.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 151.4 bits (381), Expect = 7.9e-33
Identity = 85/227 (37.44%), Postives = 112/227 (49.34%), Query Frame = 0

Query: 4   KLRRRLDDRLKGWAGRFLSQARKDVLVKVVALAIPVYTMNCFKLPMLVCKEIN------- 63
           ++RR+LD +L GWA +FLS A K+VL+K VA+A+P YTM+CFKLP+ +CKEI        
Sbjct: 678 EVRRKLDGKLHGWAEQFLSPAGKEVLIKAVAMAMPCYTMSCFKLPVTLCKEIEAAMARFW 737

Query: 64  -------------------------------------TLLAKQGWRILTKSDSWVAIIYK 123
                                                 LLAK GWRIL    S +A +  
Sbjct: 738 WKSHSDKNGIHWASWTKLSQLKKAGGLGFRDLQCFNMALLAKIGWRILHNPSSLLACLLH 797

Query: 124 AKYLRQKSFLEVEAGDSALWGWKSILAGRVVLRQGVRWSIGVNPEVDIWRDSWLPRPFTF 183
            KY    SFL   +  S+ WGWK IL GR +L  G+RW IG    V +  D WLP P+TF
Sbjct: 798 DKYFVGASFLTATSQKSSSWGWKGILQGRRLLESGLRWRIGDGTTVQVRNDPWLPTPYTF 857

Query: 184 RPMRCLDDEWQMAIEFIDGSGPKWNEKRLRKCLVGEDVEMTLAIPLS 187
           R +    D   M  E ID     W +  + +C V E+    L+IP+S
Sbjct: 858 RTLSRHPDLPYMVHELIDPLLKTWKKDVVNRCFVPEEATHILSIPIS 904

BLAST of Lag0008527 vs. NCBI nr
Match: CAB4303756.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 151.4 bits (381), Expect = 7.9e-33
Identity = 85/227 (37.44%), Postives = 112/227 (49.34%), Query Frame = 0

Query: 4   KLRRRLDDRLKGWAGRFLSQARKDVLVKVVALAIPVYTMNCFKLPMLVCKEIN------- 63
           ++ R+LDD+L GWA +FLS A K+VL+K VA+A+P YTM+ FKLP+ +CKEI        
Sbjct: 350 EVHRKLDDKLHGWAEQFLSPAGKEVLIKAVAMAMPCYTMSSFKLPVTLCKEIEAAMARFW 409

Query: 64  -------------------------------------TLLAKQGWRILTKSDSWVAIIYK 123
                                                TLLAK GWRIL    S +A +  
Sbjct: 410 WKSHTDKNDIHWASWTKLSQLKKVGGLGFRDLQCFNMTLLAKIGWRILHNPSSLLACLLH 469

Query: 124 AKYLRQKSFLEVEAGDSALWGWKSILAGRVVLRQGVRWSIGVNPEVDIWRDSWLPRPFTF 183
            KY    SFL   +  S+ WGWK IL GR +L  G+RW IG    V +  D WLP P+TF
Sbjct: 470 DKYFVGASFLTATSQKSSSWGWKGILQGRRLLESGLRWRIGDGTTVQVRNDPWLPTPYTF 529

Query: 184 RPMRCLDDEWQMAIEFIDGSGPKWNEKRLRKCLVGEDVEMTLAIPLS 187
           R +    D   M  E ID     W +  + +C V E+    L+IP+S
Sbjct: 530 RTLSRHPDLPSMVHELIDPLLKTWKKDVINRCFVPEEASHILSIPIS 576

BLAST of Lag0008527 vs. NCBI nr
Match: XP_042962692.1 (uncharacterized protein LOC122296963 [Carya illinoinensis])

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-30
Identity = 79/230 (34.35%), Postives = 117/230 (50.87%), Query Frame = 0

Query: 5    LRRRLDDRLKGWAGRFLSQARKDVLVKVVALAIPVYTMNCFKLPMLVCKEIN-------- 64
            L+ R+  R+  W  RFLSQA K+VL+K V  +IP YTM  FKLP  +CK+IN        
Sbjct: 1084 LKERIWQRIVSWENRFLSQAGKEVLIKAVLQSIPTYTMGVFKLPSRLCKDINGMLSKFWW 1143

Query: 65   ------------------------------------TLLAKQGWRILTKSDSWVAIIYKA 124
                                                 LLAKQGWRIL    S  A+I++ 
Sbjct: 1144 GKKQEGRGLIWRKWERLSEQKLKGGMGFRDLESFNSALLAKQGWRILKYPLSLAAVIFRE 1203

Query: 125  KYLRQKSFLEVEAGDSALWGWKSILAGRVVLRQGVRWSIGVNPEVDIWRDSWLPRPFTF- 184
            KY R  SF+E + G      W+SI + R +L++G+RW +G   E+ IW   WL  P ++ 
Sbjct: 1204 KYFRNGSFMEAKLGSQPSLIWRSICSARTILKEGLRWRVGDGKEIKIWGSKWLTSPTSYA 1263

Query: 185  --RPMRCLDDEWQMAIEFIDGSGPKWNEKRLRKCLVGEDVEMTLAIPLSS 188
               P++ L ++ ++  E ID    +W+E ++R+  V E+ E+ L++PLSS
Sbjct: 1264 VQSPVKVLQEDAKVE-ELIDTQKGEWDEAKIREIFVTEEAEIILSMPLSS 1312

BLAST of Lag0008527 vs. NCBI nr
Match: XP_042939230.1 (uncharacterized protein LOC122274265 isoform X9 [Carya illinoinensis])

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-30
Identity = 79/230 (34.35%), Postives = 117/230 (50.87%), Query Frame = 0

Query: 5    LRRRLDDRLKGWAGRFLSQARKDVLVKVVALAIPVYTMNCFKLPMLVCKEIN-------- 64
            L+ R+  R+  W  RFLSQA K+VL+K V  +IP YTM  FKLP  +CK+IN        
Sbjct: 779  LKERIWQRIVSWENRFLSQAGKEVLIKAVLQSIPTYTMGVFKLPSRLCKDINGMLSKFWW 838

Query: 65   ------------------------------------TLLAKQGWRILTKSDSWVAIIYKA 124
                                                 LLAKQGWRIL    S  A+I++ 
Sbjct: 839  GKKQEGRGLIWRKWERLSEQKLKGGMGFRDLESFNSALLAKQGWRILKYPLSLAAVIFRE 898

Query: 125  KYLRQKSFLEVEAGDSALWGWKSILAGRVVLRQGVRWSIGVNPEVDIWRDSWLPRPFTF- 184
            KY R  SF+E + G      W+SI + R +L++G+RW +G   E+ IW   WL  P ++ 
Sbjct: 899  KYFRNGSFMEAKLGSQPSLIWRSICSARTILKEGLRWRVGDGKEIKIWGSKWLTSPTSYA 958

Query: 185  --RPMRCLDDEWQMAIEFIDGSGPKWNEKRLRKCLVGEDVEMTLAIPLSS 188
               P++ L ++ ++  E ID    +W+E ++R+  V E+ E+ L++PLSS
Sbjct: 959  VQSPVKVLQEDAKVE-ELIDTQKGEWDEAKIREIFVTEEAEIILSMPLSS 1007

BLAST of Lag0008527 vs. NCBI nr
Match: XP_042979975.1 (uncharacterized protein LOC122310162 [Carya illinoinensis])

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-30
Identity = 79/230 (34.35%), Postives = 117/230 (50.87%), Query Frame = 0

Query: 5    LRRRLDDRLKGWAGRFLSQARKDVLVKVVALAIPVYTMNCFKLPMLVCKEIN-------- 64
            L+ R+  R+  W  RFLSQA K+VL+K V  +IP YTM  FKLP  +CK+IN        
Sbjct: 1190 LKERIWQRIVSWENRFLSQAGKEVLIKAVLQSIPTYTMGVFKLPSRLCKDINGMLSKFWW 1249

Query: 65   ------------------------------------TLLAKQGWRILTKSDSWVAIIYKA 124
                                                 LLAKQGWRIL    S  A+I++ 
Sbjct: 1250 EKKQEGRGLIWRKWERLSEQKLKGGMGFRDLESFNSALLAKQGWRILKYPLSLAAVIFRE 1309

Query: 125  KYLRQKSFLEVEAGDSALWGWKSILAGRVVLRQGVRWSIGVNPEVDIWRDSWLPRPFTF- 184
            KY R  SF+E + G      W+SI + R +L++G+RW +G   E+ IW   WL  P ++ 
Sbjct: 1310 KYFRNGSFMEAKLGSQPSLIWRSICSARTILKEGLRWRVGDGKEIKIWGSKWLTSPTSYA 1369

Query: 185  --RPMRCLDDEWQMAIEFIDGSGPKWNEKRLRKCLVGEDVEMTLAIPLSS 188
               P++ L ++ ++  E ID    +W+E ++R+  V E+ E+ L++PLSS
Sbjct: 1370 VQSPVKVLQEDAKVE-ELIDTQKGEWDEAKIREIFVTEEAEIILSMPLSS 1418

BLAST of Lag0008527 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-08
Identity = 34/144 (23.61%), Postives = 62/144 (43.06%), Query Frame = 0

Query: 35  LAIPVYTMNCFKLPMLVCKEINT------------------------------------- 94
           +A+PVY M+CF+L  L+CK++ +                                     
Sbjct: 1   MALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFR 60

Query: 95  --------LLAKQGWRILTKSDSWVAIIYKAKYLRQKSFLEVEAGDSALWGWKSILAGRV 134
                   LLAKQ +RI+ +  + ++ + +++Y    S +E   G    + W+SI+ GR 
Sbjct: 61  DLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRE 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAB4274760.17.9e-3337.44unnamed protein product [Prunus armeniaca][more]
CAB4303756.17.9e-3337.44unnamed protein product [Prunus armeniaca][more]
XP_042962692.11.3e-3034.35uncharacterized protein LOC122296963 [Carya illinoinensis][more]
XP_042939230.11.3e-3034.35uncharacterized protein LOC122274265 isoform X9 [Carya illinoinensis][more]
XP_042979975.11.3e-3034.35uncharacterized protein LOC122310162 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
P932951.8e-0823.61Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33116:SF45SUBFAMILY NOT NAMEDcoord: 4..185
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 4..185

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0008527.1Lag0008527.1mRNA