Lag0008412 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0008412
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 21
Locationchr9: 20886131 .. 20887049 (+)
RNA-Seq ExpressionLag0008412
SyntenyLag0008412
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTATCCAAAGCAATAGTCCCGTGCCTCCTGAATTGGCAAGGCATGAGGCATCTAAGTTCAAGCCTGGGAGTATTCCTGATAGACCTCCCCGACGTAATGAAACTCTTTTTGCACATTGAGGAACGTGATTTTGAAGACATTTACATGGTCATAATTGCTGTATTGACTACATAGTTGTTTTGCTTTGCTTTGCTTTTATCTGGTATAAATTTTCTTGTCATTGTAATTTTTAGATGTTCTTGGCATAACTCATTATGGACTGTCAGTGTTTAACTTTCAAAATTACTAATTTGTTTTATAGTGAAACAACTAACCGATTTAGGTATCTAAAGTATATTGGCTTGATGCTTCATTTTTTATTGTTTATAGCTGCAATTCTATAATGTGTTTGAGAGTTTAGTCCAAGGGTTTGATGAGATGTAATTATAAAGTTGATGTGAATCGATCAACTTTTTAAATATTTCTCGTAGGTATAGAGACTAACATGTTTCCTCGTGAGAAAAATTTCTTGGGATTGGCCCCCATATAAACTTGATTGTGCTTGATAATATATATTTGAGGCTTACCATAGTGTATATTTTAGGGTTTAGGGCTTACCATAGTGTACTTTCTACCCATCTTTCTAGTGTTAGAATATCCAGTCCAAATTTTCTGCTGGATACGAACTATTGACAATGGAGGGTGCTACTGACGTTGCTACTGCTTTTGGATTGACCACTTGCCGCTCGGTGATAATTCGGTCCTTGTGGAATTTTATTTTCCTTATTGGACTATGAAGAATTTATTTGGGGTAATTTTTGGTAGCAAAAAAGGACGAAAATTCAGATTGTAGCTTGTGAAGCTTAACCTACCAGCGCAGATGGTGATGCTGATGGTGCTGACAACAATGATAGGGCCGTTGGTGCTGGCGACTAG

mRNA sequence

ATGCTTATCCAAAGCAATAGTCCCGTGCCTCCTGAATTGGCAAGGCATGAGGCATCTAAGTTCAAGCCTGGGAGTATTCCTGATAGACCTCCCCGACATGTTCTTGGCATAACTCATTATGGACTCGCAGATGGTGATGCTGATGGTGCTGACAACAATGATAGGGCCGTTGGTGCTGGCGACTAG

Coding sequence (CDS)

ATGCTTATCCAAAGCAATAGTCCCGTGCCTCCTGAATTGGCAAGGCATGAGGCATCTAAGTTCAAGCCTGGGAGTATTCCTGATAGACCTCCCCGACATGTTCTTGGCATAACTCATTATGGACTCGCAGATGGTGATGCTGATGGTGCTGACAACAATGATAGGGCCGTTGGTGCTGGCGACTAG

Protein sequence

MLIQSNSPVPPELARHEASKFKPGSIPDRPPRHVLGITHYGLADGDADGADNNDRAVGAGD
Homology
[Close]
BLAST of Lag0008412 vs. NCBI nr
Match: PRQ46880.1 (putative RNA helicase [Rosa chinensis])

HSP 1 Score: 70.1 bits (170), Expect = 7.5e-09
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1   MLIQSNSPVPPELARHEASKFKPGSIPDRPPRH 34
           MLIQSNSPVPPELARHEASK+KPG+IPDRPPRH
Sbjct: 142 MLIQSNSPVPPELARHEASKYKPGTIPDRPPRH 174

[Close]
BLAST of Lag0008412 vs. NCBI nr
Match: KAF5191403.1 (Dead-box atp-dependent rna helicase [Thalictrum thalictroides])

HSP 1 Score: 70.1 bits (170), Expect = 7.5e-09
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1   MLIQSNSPVPPELARHEASKFKPGSIPDRPPRH 34
           MLIQSNSPVPPELARHEAS+FKPG+IPDRPPRH
Sbjct: 547 MLIQSNSPVPPELARHEASRFKPGTIPDRPPRH 579

[Close]
BLAST of Lag0008412 vs. NCBI nr
Match: XP_030461821.1 (DEAD-box ATP-dependent RNA helicase 21 [Syzygium oleosum])

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1   MLIQSNSPVPPELARHEASKFKPGSIPDRPPR 33
           MLIQSNSPVPPELARHEASKFKPGSIPDRPPR
Sbjct: 682 MLIQSNSPVPPELARHEASKFKPGSIPDRPPR 713

[Close]
BLAST of Lag0008412 vs. NCBI nr
Match: XP_042406266.1 (DEAD-box ATP-dependent RNA helicase 21-like [Zingiber officinale] >KAG6499539.1 hypothetical protein ZIOFF_039329 [Zingiber officinale])

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1   MLIQSNSPVPPELARHEASKFKPGSIPDRPPR 33
           MLIQSNSPVPPELARHEASKFKPGSIPDRPPR
Sbjct: 703 MLIQSNSPVPPELARHEASKFKPGSIPDRPPR 734

[Close]
BLAST of Lag0008412 vs. NCBI nr
Match: XP_029119289.1 (DEAD-box ATP-dependent RNA helicase 21-like [Elaeis guineensis])

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1   MLIQSNSPVPPELARHEASKFKPGSIPDRPPR 33
           MLIQSNSPVPPELARHEASKFKPGSIPDRPPR
Sbjct: 668 MLIQSNSPVPPELARHEASKFKPGSIPDRPPR 699

[Close]
BLAST of Lag0008412 vs. ExPASy Swiss-Prot
Match: Q53RK8 (DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0708600 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.2e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1   MLIQSNSPVPPELARHEASKFKPGSIPDRPPR 33
           MLIQSNSPVPPELARHEASKFKPGS+PDRPPR
Sbjct: 696 MLIQSNSPVPPELARHEASKFKPGSVPDRPPR 727

[Close]
BLAST of Lag0008412 vs. ExPASy Swiss-Prot
Match: P93008 (DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana OX=3702 GN=RH21 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-10
Identity = 28/33 (84.85%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 1   MLIQSNSPVPPELARHEASKFKPGSIPDRPPRH 34
           ML+QSNS VPPELARHEAS+FKPG++PDRPPRH
Sbjct: 694 MLVQSNSAVPPELARHEASRFKPGTVPDRPPRH 726

[Close]
BLAST of Lag0008412 vs. ExPASy Swiss-Prot
Match: Q9FZ92 (Putative DEAD-box ATP-dependent RNA helicase 44 OS=Arabidopsis thaliana OX=3702 GN=RH44 PE=5 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 4.0e-05
Identity = 22/28 (78.57%), Postives = 24/28 (85.71%), Query Frame = 0 

Query: 2   LIQSNSPVPPELARHEASKFKPGSIPDR 30
           L + NS VPPELARHEASKFKPG+ PDR
Sbjct: 591 LNECNSLVPPELARHEASKFKPGTFPDR 618

The following BLAST results are available for this feature:
BLAST of Lag0008412 vs. NCBI nr
Match NameE-valueIdentityDescription
PRQ46880.17.5e-0993.94putative RNA helicase [Rosa chinensis][more]
KAF5191403.17.5e-0993.94Dead-box atp-dependent rna helicase [Thalictrum thalictroides][more]
XP_030461821.11.3e-08100.00DEAD-box ATP-dependent RNA helicase 21 [Syzygium oleosum][more]
XP_042406266.11.3e-08100.00DEAD-box ATP-dependent RNA helicase 21-like [Zingiber officinale] >KAG6499539.1 ... [more]
XP_029119289.11.3e-08100.00DEAD-box ATP-dependent RNA helicase 21-like [Elaeis guineensis][more]
BLAST of Lag0008412 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q53RK82.2e-1196.88DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica OX=39947 ... [more]
P930081.4e-1084.85DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana OX=3702 GN=RH21 P... [more]
Q9FZ924.0e-0578.57Putative DEAD-box ATP-dependent RNA helicase 44 OS=Arabidopsis thaliana OX=3702 ... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0008412.1Lag0008412.1mRNA