Lag0008387 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0008387
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase
Location	chr9: 19851310 .. 19852530 (+)
RNA-Seq Expression	Lag0008387
Synteny	Lag0008387

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCACGTACCAGCAGACGACGAAGGCAGAATCAGGACGGGATGCAGGATCCTACCCAAAGTCAATCTGAAACGGGATCCAGTACCCCGAGAGGTCAGAATGAGGTAGGGAGTGAGCGATTTGCTAGATCTGCACAAGAGGTCGGTAGGCCAGAGAGAGTAGGGCCTAGTGATCCGGAAAAGATGTATGGGATAGAACGGCTGAACAAGTTAGGAGCCACTGTGTTTGAGGGTTCCACAGATCCAGCTGACGCCGAGGTCTGGTTAAATATGCTGGAGAAATGCTTCGACGTGATGAGTTGTCCCGAGGAGCGAAAAGTCAGATTAGCTACATTCCTTTTGCAGAAGGAGGCGGAGGGATGGTGGAAGTCCATTATAGCCAGACGTAGTGATGCACGTACGTTAGATTGGCAGACGTTCAGAGGCATATTCGAGGATAAGTACTATCCCACCACATATTGTGAGGCTAAGAGAGATGAGTTTCTAGGGCTGAAGCAAGGGTCACTTTCAGTGGCCGAGTACGAGAGAAAGTATACCGAGCTTTCACGGTATGCCGATGTGATTGTGGCATCTAAGAGTGACAGGTGTCACAAGTTTGAGAGAGGGCTGCGTTTTGAGATACGTACCCCAGTTACCGCTATTGGCAAGTGGACAGATTTTTTCCAACTAGTAGAGACTGCTTTACGTTTGGAGCAGAGTATAATAGAGCAAAAGTCGACAGTGGAGCCTAGTCGTGGAGCTCCAACAGCTAGTAGTTTTCGAGGTCGTGAGCAGCGGAGGTTCACACCTGGAGTGAATGTTTCAGGCCGTCAAGACTTCAAGAGTCAATTTGGTGGCCAGTCATCGAGGCAGATGAGTTTAGGTAGTGCCTATCAAAGGCAGAGTCAGAGAGCCCCCAGTCAGTCTGCGAGTTCAGTAGCAAGACCGCAGACGGGTCAGGAGTCTGTTGCTAGTGAATCCAGGAGAACCCCATGTACGAGTTGTGGCAAGAATCATCAGGGTCAATGTCTTGTTGGTGTCGGTGTGTGTTATCTGTGTGGACAACCAGGACATTTCAAGAGGGATTGTCCACAGCTGAGGGCAGCGGTTCAGAGGGACCAAGGAGTTGAGTCCCACACAGTTGAGCAGCCGAGAGTCTTAGCAAGCGCAGGAGAAGGCACCAGTGGTACAAGGCAAAAGAGAGTTGTGGGGAGACCTAGGCTGAAGGTGTTCATATAA

mRNA sequence

ATGCCACCACGTACCAGCAGACGACGAAGGCAGAATCAGGACGGGATGCAGGATCCTACCCAAAGTCAATCTGAAACGGGATCCAGTACCCCGAGAGGTCAGAATGAGGTAGGGAGTGAGCGATTTGCTAGATCTGCACAAGAGGTCGGTAGGCCAGAGAGAGTAGGGCCTAGTGATCCGGAAAAGATGTATGGGATAGAACGGCTGAACAAGTTAGGAGCCACTGTGTTTGAGGGTTCCACAGATCCAGCTGACGCCGAGGTCTGGTTAAATATGCTGGAGAAATGCTTCGACGTGATGAGTTGTCCCGAGGAGCGAAAAGTCAGATTAGCTACATTCCTTTTGCAGAAGGAGGCGGAGGGATGGTGGAAGTCCATTATAGCCAGACGTAGTGATGCACGTACGTTAGATTGGCAGACGTTCAGAGGCATATTCGAGGATAAGTACTATCCCACCACATATTGTGAGGCTAAGAGAGATGAGTTTCTAGGGCTGAAGCAAGGGTCACTTTCAGTGGCCGAGTACGAGAGAAAGTATACCGAGCTTTCACGGTATGCCGATGTGATTGTGGCATCTAAGAGTGACAGGTGTCACAAGTTTGAGAGAGGGCTGCGTTTTGAGATACGTACCCCAGTTACCGCTATTGGCAAGTGGACAGATTTTTTCCAACTAGTAGAGACTGCTTTACGTTTGGAGCAGAGTATAATAGAGCAAAAGTCGACAGTGGAGCCTAGTCGTGGAGCTCCAACAGCTAGTAGTTTTCGAGGTCGTGAGCAGCGGAGGTTCACACCTGGAGTGAATGTTTCAGGCCGTCAAGACTTCAAGAGTCAATTTGGTGGCCAGTCATCGAGGCAGATGAGTTTAGGTAGTGCCTATCAAAGGCAGAGTCAGAGAGCCCCCAGTCAGTCTGCGAGTTCAGTAGCAAGACCGCAGACGGGTCAGGAGTCTGTTGCTAGTGAATCCAGGAGAACCCCATGTACGAGTTGTGGCAAGAATCATCAGGGTCAATGTCTTGTTGGTGTCGGTGTGTGTTATCTGTGTGGACAACCAGGACATTTCAAGAGGGATTGTCCACAGCTGAGGGCAGCGGTTCAGAGGGACCAAGGAGTTGAGTCCCACACAGTTGAGCAGCCGAGAGTCTTAGCAAGCGCAGGAGAAGGCACCAGTGGTACAAGGCAAAAGAGAGTTGTGGGGAGACCTAGGCTGAAGGTGTTCATATAA

Coding sequence (CDS)

ATGCCACCACGTACCAGCAGACGACGAAGGCAGAATCAGGACGGGATGCAGGATCCTACCCAAAGTCAATCTGAAACGGGATCCAGTACCCCGAGAGGTCAGAATGAGGTAGGGAGTGAGCGATTTGCTAGATCTGCACAAGAGGTCGGTAGGCCAGAGAGAGTAGGGCCTAGTGATCCGGAAAAGATGTATGGGATAGAACGGCTGAACAAGTTAGGAGCCACTGTGTTTGAGGGTTCCACAGATCCAGCTGACGCCGAGGTCTGGTTAAATATGCTGGAGAAATGCTTCGACGTGATGAGTTGTCCCGAGGAGCGAAAAGTCAGATTAGCTACATTCCTTTTGCAGAAGGAGGCGGAGGGATGGTGGAAGTCCATTATAGCCAGACGTAGTGATGCACGTACGTTAGATTGGCAGACGTTCAGAGGCATATTCGAGGATAAGTACTATCCCACCACATATTGTGAGGCTAAGAGAGATGAGTTTCTAGGGCTGAAGCAAGGGTCACTTTCAGTGGCCGAGTACGAGAGAAAGTATACCGAGCTTTCACGGTATGCCGATGTGATTGTGGCATCTAAGAGTGACAGGTGTCACAAGTTTGAGAGAGGGCTGCGTTTTGAGATACGTACCCCAGTTACCGCTATTGGCAAGTGGACAGATTTTTTCCAACTAGTAGAGACTGCTTTACGTTTGGAGCAGAGTATAATAGAGCAAAAGTCGACAGTGGAGCCTAGTCGTGGAGCTCCAACAGCTAGTAGTTTTCGAGGTCGTGAGCAGCGGAGGTTCACACCTGGAGTGAATGTTTCAGGCCGTCAAGACTTCAAGAGTCAATTTGGTGGCCAGTCATCGAGGCAGATGAGTTTAGGTAGTGCCTATCAAAGGCAGAGTCAGAGAGCCCCCAGTCAGTCTGCGAGTTCAGTAGCAAGACCGCAGACGGGTCAGGAGTCTGTTGCTAGTGAATCCAGGAGAACCCCATGTACGAGTTGTGGCAAGAATCATCAGGGTCAATGTCTTGTTGGTGTCGGTGTGTGTTATCTGTGTGGACAACCAGGACATTTCAAGAGGGATTGTCCACAGCTGAGGGCAGCGGTTCAGAGGGACCAAGGAGTTGAGTCCCACACAGTTGAGCAGCCGAGAGTCTTAGCAAGCGCAGGAGAAGGCACCAGTGGTACAAGGCAAAAGAGAGTTGTGGGGAGACCTAGGCTGAAGGTGTTCATATAA

Protein sequence

MPPRTSRRRRQNQDGMQDPTQSQSETGSSTPRGQNEVGSERFARSAQEVGRPERVGPSDPEKMYGIERLNKLGATVFEGSTDPADAEVWLNMLEKCFDVMSCPEERKVRLATFLLQKEAEGWWKSIIARRSDARTLDWQTFRGIFEDKYYPTTYCEAKRDEFLGLKQGSLSVAEYERKYTELSRYADVIVASKSDRCHKFERGLRFEIRTPVTAIGKWTDFFQLVETALRLEQSIIEQKSTVEPSRGAPTASSFRGREQRRFTPGVNVSGRQDFKSQFGGQSSRQMSLGSAYQRQSQRAPSQSASSVARPQTGQESVASESRRTPCTSCGKNHQGQCLVGVGVCYLCGQPGHFKRDCPQLRAAVQRDQGVESHTVEQPRVLASAGEGTSGTRQKRVVGRPRLKVFI

Homology

[Close]

BLAST of Lag0008387 vs. NCBI nr
Match: KAA0066849.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 622.9 bits (1605), Expect = 2.0e-174
Identity = 313/401 (78.05%), Postives = 340/401 (84.79%), Query Frame = 0


Query: 1   MPPRTSRRRRQNQDGMQDPTQSQSETGSSTPRGQNEVGSERFARSAQEVGRPERVGPSDP 60
           MPPRT RRRRQNQDGMQ PTQ  S   SST   +   G+E+FAR+ QE+GR +R  PSDP
Sbjct: 39  MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDP 98

Query: 61  EKMYGIERLNKLGATVFEGSTDPADAEVWLNMLEKCFDVMSCPEERKVRLATFLLQKEAE 120
           EK YGIERL KLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKVRLATFLLQKEAE
Sbjct: 99  EKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAE 158

Query: 121 GWWKSIIARRSDARTLDWQTFRGIFEDKYYPTTYCEAKRDEFLGLKQGSLSVAEYERKYT 180
           GWWKSI+ARRSDAR LDWQTFRGIFEDKYYP+TYCEAKRDEFLGLKQGSLSVAEYERKYT
Sbjct: 159 GWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYT 218

Query: 181 ELSRYADVIVASKSDRCHKFERGLRFEIRTPVTAIGKWTDFFQLVETALRLEQSIIEQKS 240
           ELSRYADVI+AS+SDRC +FERGLRFEIRTPVTAI KWT+F QLVETALR+EQSI E+KS
Sbjct: 219 ELSRYADVIIASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKS 278

Query: 241 TVEPSRGAPTASSFRGREQRRFTPGVNVSGRQDFKSQFGGQSSRQMSLGSAYQRQSQRAP 300
            VE SRG  TAS FRGREQRRFTPG+N+S RQDFK++ GGQ+SR +S GS +QRQSQR P
Sbjct: 279 AVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIP 338

Query: 301 SQSASSVARPQTGQESVASESRRTPCTSCGKNHQGQCLVGVGVCYLCGQPGHFKRDCPQL 360
           SQ   S  R Q GQES+AS  RR PCTSCG+NH+GQCLVG GVCY CGQPGHFK+DCPQL
Sbjct: 339 SQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQL 398

Query: 361 RAAVQRDQGVESHTVEQPRVLASAGEGTSGTRQKRVVGRPR 402
              VQRDQGV S T+EQ RV     EGTSG RQK VVGRPR
Sbjct: 399 NMTVQRDQGVGSQTIEQSRVSVVPTEGTSGARQKGVVGRPR 439

[Close]

BLAST of Lag0008387 vs. NCBI nr
Match: KAA0035455.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01987.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK03719.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK25877.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 622.9 bits (1605), Expect = 2.0e-174
Identity = 313/401 (78.05%), Postives = 340/401 (84.79%), Query Frame = 0


Query: 1   MPPRTSRRRRQNQDGMQDPTQSQSETGSSTPRGQNEVGSERFARSAQEVGRPERVGPSDP 60
           MPPRT RRRRQNQDGMQ PTQ  S   SST   +   G+E+FAR+ QE+GR +R  PSDP
Sbjct: 39  MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDP 98

Query: 61  EKMYGIERLNKLGATVFEGSTDPADAEVWLNMLEKCFDVMSCPEERKVRLATFLLQKEAE 120
           EK YGIERL KLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKVRLATFLLQKEAE
Sbjct: 99  EKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAE 158

Query: 121 GWWKSIIARRSDARTLDWQTFRGIFEDKYYPTTYCEAKRDEFLGLKQGSLSVAEYERKYT 180
           GWWKSI+ARRSDAR LDWQTFRGIFEDKYYP+TYCEAKRDEFLGLKQGSLSVAEYERKYT
Sbjct: 159 GWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYT 218

Query: 181 ELSRYADVIVASKSDRCHKFERGLRFEIRTPVTAIGKWTDFFQLVETALRLEQSIIEQKS 240
           ELSRYADVI+AS+SDRC +FERGLRFEIRTPVTAI KWT+F QLVETALR+EQSI E+KS
Sbjct: 219 ELSRYADVIIASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKS 278

Query: 241 TVEPSRGAPTASSFRGREQRRFTPGVNVSGRQDFKSQFGGQSSRQMSLGSAYQRQSQRAP 300
            VE SRG  TAS FRGREQRRFTPG+N+S RQDFK++ GGQ+SR +S GS +QRQSQR P
Sbjct: 279 AVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIP 338

Query: 301 SQSASSVARPQTGQESVASESRRTPCTSCGKNHQGQCLVGVGVCYLCGQPGHFKRDCPQL 360
           SQ   S  R Q GQES+AS  RR PCTSCG+NH+GQCLVG GVCY CGQPGHFK+DCPQL
Sbjct: 339 SQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQL 398

Query: 361 RAAVQRDQGVESHTVEQPRVLASAGEGTSGTRQKRVVGRPR 402
              VQRDQGV S T+EQ RV     EGTSG RQK VVGRPR
Sbjct: 399 NMTVQRDQGVGSQTIEQSRVSVVPTEGTSGARQKGVVGRPR 439

[Close]

BLAST of Lag0008387 vs. NCBI nr
Match: TYK06334.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 622.9 bits (1605), Expect = 2.0e-174
Identity = 313/401 (78.05%), Postives = 340/401 (84.79%), Query Frame = 0


Query: 1   MPPRTSRRRRQNQDGMQDPTQSQSETGSSTPRGQNEVGSERFARSAQEVGRPERVGPSDP 60
           MPPRT RRRRQNQDGMQ PTQ  S   SST   +   G+E+FAR+ QE+GR +R  PSDP
Sbjct: 1   MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDP 60

Query: 61  EKMYGIERLNKLGATVFEGSTDPADAEVWLNMLEKCFDVMSCPEERKVRLATFLLQKEAE 120
           EK YGIERL KLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKVRLATFLLQKEAE
Sbjct: 61  EKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAE 120

Query: 121 GWWKSIIARRSDARTLDWQTFRGIFEDKYYPTTYCEAKRDEFLGLKQGSLSVAEYERKYT 180
           GWWKSI+ARRSDAR LDWQTFRGIFEDKYYP+TYCEAKRDEFLGLKQGSLSVAEYERKYT
Sbjct: 121 GWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYT 180

Query: 181 ELSRYADVIVASKSDRCHKFERGLRFEIRTPVTAIGKWTDFFQLVETALRLEQSIIEQKS 240
           ELSRYADVI+AS+SDRC +FERGLRFEIRTPVTAI KWT+F QLVETALR+EQSI E+KS
Sbjct: 181 ELSRYADVIIASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKS 240

Query: 241 TVEPSRGAPTASSFRGREQRRFTPGVNVSGRQDFKSQFGGQSSRQMSLGSAYQRQSQRAP 300
            VE SRG  TAS FRGREQRRFTPG+N+S RQDFK++ GGQ+SR +S GS +QRQSQR P
Sbjct: 241 AVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIP 300

Query: 301 SQSASSVARPQTGQESVASESRRTPCTSCGKNHQGQCLVGVGVCYLCGQPGHFKRDCPQL 360
           SQ   S  R Q GQES+AS  RR PCTSCG+NH+GQCLVG GVCY CGQPGHFK+DCPQL
Sbjct: 301 SQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQL 360

Query: 361 RAAVQRDQGVESHTVEQPRVLASAGEGTSGTRQKRVVGRPR 402
              VQRDQGV S T+EQ RV     EGTSG RQK VVGRPR
Sbjct: 361 NMTVQRDQGVGSQTIEQSRVSVVPTEGTSGARQKGVVGRPR 401

[Close]

BLAST of Lag0008387 vs. NCBI nr
Match: TYK27507.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 622.9 bits (1605), Expect = 2.0e-174
Identity = 313/401 (78.05%), Postives = 340/401 (84.79%), Query Frame = 0


Query: 1   MPPRTSRRRRQNQDGMQDPTQSQSETGSSTPRGQNEVGSERFARSAQEVGRPERVGPSDP 60
           MPPRT RRRRQNQDGMQ PTQ  S   SST   +   G+E+FAR+ QE+GR +R  PSDP
Sbjct: 1   MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDP 60

Query: 61  EKMYGIERLNKLGATVFEGSTDPADAEVWLNMLEKCFDVMSCPEERKVRLATFLLQKEAE 120
           EK YGIERL KLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKVRLATFLLQKEAE
Sbjct: 61  EKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAE 120

Query: 121 GWWKSIIARRSDARTLDWQTFRGIFEDKYYPTTYCEAKRDEFLGLKQGSLSVAEYERKYT 180
           GWWKSI+ARRSDAR LDWQTFRGIFEDKYYP+TYCEAKRDEFLGLKQGSLSVAEYERKYT
Sbjct: 121 GWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYT 180

Query: 181 ELSRYADVIVASKSDRCHKFERGLRFEIRTPVTAIGKWTDFFQLVETALRLEQSIIEQKS 240
           ELSRYADVI+AS+SDRC +FERGLRFEIRTPVTAI KWT+F QLVETALR+EQSI E+KS
Sbjct: 181 ELSRYADVIIASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKS 240

Query: 241 TVEPSRGAPTASSFRGREQRRFTPGVNVSGRQDFKSQFGGQSSRQMSLGSAYQRQSQRAP 300
            VE SRG  TAS FRGREQRRFTPG+N+S RQDFK++ GGQ+SR +S GS +QRQSQR P
Sbjct: 241 AVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIP 300

Query: 301 SQSASSVARPQTGQESVASESRRTPCTSCGKNHQGQCLVGVGVCYLCGQPGHFKRDCPQL 360
           SQ   S  R Q GQES+AS  RR PCTSCG+NH+GQCLVG GVCY CGQPGHFK+DCPQL
Sbjct: 301 SQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQL 360

Query: 361 RAAVQRDQGVESHTVEQPRVLASAGEGTSGTRQKRVVGRPR 402
              VQRDQGV S T+EQ RV     EGTSG RQK VVGRPR
Sbjct: 361 NMTVQRDQGVGSQTIEQSRVSVVPTEGTSGARQKGVVGRPR 401

[Close]

BLAST of Lag0008387 vs. NCBI nr
Match: KAA0056684.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 622.9 bits (1605), Expect = 2.0e-174
Identity = 313/401 (78.05%), Postives = 340/401 (84.79%), Query Frame = 0


Query: 1   MPPRTSRRRRQNQDGMQDPTQSQSETGSSTPRGQNEVGSERFARSAQEVGRPERVGPSDP 60
           MPPRT RRRRQNQDGMQ PTQ  S   SST   +   G+E+FAR+ QE+GR +R  PSDP
Sbjct: 250 MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDP 309

Query: 61  EKMYGIERLNKLGATVFEGSTDPADAEVWLNMLEKCFDVMSCPEERKVRLATFLLQKEAE 120
           EK YGIERL KLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKVRLATFLLQKEAE
Sbjct: 310 EKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAE 369

Query: 121 GWWKSIIARRSDARTLDWQTFRGIFEDKYYPTTYCEAKRDEFLGLKQGSLSVAEYERKYT 180
           GWWKSI+ARRSDAR LDWQTFRGIFEDKYYP+TYCEAKRDEFLGLKQGSLSVAEYERKYT
Sbjct: 370 GWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYT 429

Query: 181 ELSRYADVIVASKSDRCHKFERGLRFEIRTPVTAIGKWTDFFQLVETALRLEQSIIEQKS 240
           ELSRYADVI+AS+SDRC +FERGLRFEIRTPVTAI KWT+F QLVETALR+EQSI E+KS
Sbjct: 430 ELSRYADVIIASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKS 489

Query: 241 TVEPSRGAPTASSFRGREQRRFTPGVNVSGRQDFKSQFGGQSSRQMSLGSAYQRQSQRAP 300
            VE SRG  TAS FRGREQRRFTPG+N+S RQDFK++ GGQ+SR +S GS +QRQSQR P
Sbjct: 490 AVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIP 549

Query: 301 SQSASSVARPQTGQESVASESRRTPCTSCGKNHQGQCLVGVGVCYLCGQPGHFKRDCPQL 360
           SQ   S  R Q GQES+AS  RR PCTSCG+NH+GQCLVG GVCY CGQPGHFK+DCPQL
Sbjct: 550 SQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQL 609

Query: 361 RAAVQRDQGVESHTVEQPRVLASAGEGTSGTRQKRVVGRPR 402
              VQRDQGV S T+EQ RV     EGTSG RQK VVGRPR
Sbjct: 610 NMTVQRDQGVGSQTIEQSRVSVVPTEGTSGARQKGVVGRPR 650

[Close]

BLAST of Lag0008387 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 622.9 bits (1605), Expect = 9.7e-175
Identity = 313/401 (78.05%), Postives = 340/401 (84.79%), Query Frame = 0


Query: 1   MPPRTSRRRRQNQDGMQDPTQSQSETGSSTPRGQNEVGSERFARSAQEVGRPERVGPSDP 60
           MPPRT RRRRQNQDGMQ PTQ  S   SST   +   G+E+FAR+ QE+GR +R  PSDP
Sbjct: 1   MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDP 60

Query: 61  EKMYGIERLNKLGATVFEGSTDPADAEVWLNMLEKCFDVMSCPEERKVRLATFLLQKEAE 120
           EK YGIERL KLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKVRLATFLLQKEAE
Sbjct: 61  EKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAE 120

Query: 121 GWWKSIIARRSDARTLDWQTFRGIFEDKYYPTTYCEAKRDEFLGLKQGSLSVAEYERKYT 180
           GWWKSI+ARRSDAR LDWQTFRGIFEDKYYP+TYCEAKRDEFLGLKQGSLSVAEYERKYT
Sbjct: 121 GWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYT 180

Query: 181 ELSRYADVIVASKSDRCHKFERGLRFEIRTPVTAIGKWTDFFQLVETALRLEQSIIEQKS 240
           ELSRYADVI+AS+SDRC +FERGLRFEIRTPVTAI KWT+F QLVETALR+EQSI E+KS
Sbjct: 181 ELSRYADVIIASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKS 240

Query: 241 TVEPSRGAPTASSFRGREQRRFTPGVNVSGRQDFKSQFGGQSSRQMSLGSAYQRQSQRAP 300
            VE SRG  TAS FRGREQRRFTPG+N+S RQDFK++ GGQ+SR +S GS +QRQSQR P
Sbjct: 241 AVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIP 300

Query: 301 SQSASSVARPQTGQESVASESRRTPCTSCGKNHQGQCLVGVGVCYLCGQPGHFKRDCPQL 360
           SQ   S  R Q GQES+AS  RR PCTSCG+NH+GQCLVG GVCY CGQPGHFK+DCPQL
Sbjct: 301 SQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQL 360

Query: 361 RAAVQRDQGVESHTVEQPRVLASAGEGTSGTRQKRVVGRPR 402
              VQRDQGV S T+EQ RV     EGTSG RQK VVGRPR
Sbjct: 361 NMTVQRDQGVGSQTIEQSRVSVVPTEGTSGARQKGVVGRPR 401

[Close]

BLAST of Lag0008387 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 622.9 bits (1605), Expect = 9.7e-175
Identity = 313/401 (78.05%), Postives = 340/401 (84.79%), Query Frame = 0


Query: 1   MPPRTSRRRRQNQDGMQDPTQSQSETGSSTPRGQNEVGSERFARSAQEVGRPERVGPSDP 60
           MPPRT RRRRQNQDGMQ PTQ  S   SST   +   G+E+FAR+ QE+GR +R  PSDP
Sbjct: 39  MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDP 98

Query: 61  EKMYGIERLNKLGATVFEGSTDPADAEVWLNMLEKCFDVMSCPEERKVRLATFLLQKEAE 120
           EK YGIERL KLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKVRLATFLLQKEAE
Sbjct: 99  EKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAE 158

Query: 121 GWWKSIIARRSDARTLDWQTFRGIFEDKYYPTTYCEAKRDEFLGLKQGSLSVAEYERKYT 180
           GWWKSI+ARRSDAR LDWQTFRGIFEDKYYP+TYCEAKRDEFLGLKQGSLSVAEYERKYT
Sbjct: 159 GWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYT 218

Query: 181 ELSRYADVIVASKSDRCHKFERGLRFEIRTPVTAIGKWTDFFQLVETALRLEQSIIEQKS 240
           ELSRYADVI+AS+SDRC +FERGLRFEIRTPVTAI KWT+F QLVETALR+EQSI E+KS
Sbjct: 219 ELSRYADVIIASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKS 278

Query: 241 TVEPSRGAPTASSFRGREQRRFTPGVNVSGRQDFKSQFGGQSSRQMSLGSAYQRQSQRAP 300
            VE SRG  TAS FRGREQRRFTPG+N+S RQDFK++ GGQ+SR +S GS +QRQSQR P
Sbjct: 279 AVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIP 338

Query: 301 SQSASSVARPQTGQESVASESRRTPCTSCGKNHQGQCLVGVGVCYLCGQPGHFKRDCPQL 360
           SQ   S  R Q GQES+AS  RR PCTSCG+NH+GQCLVG GVCY CGQPGHFK+DCPQL
Sbjct: 339 SQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQL 398

Query: 361 RAAVQRDQGVESHTVEQPRVLASAGEGTSGTRQKRVVGRPR 402
              VQRDQGV S T+EQ RV     EGTSG RQK VVGRPR
Sbjct: 399 NMTVQRDQGVGSQTIEQSRVSVVPTEGTSGARQKGVVGRPR 439

[Close]

BLAST of Lag0008387 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 622.9 bits (1605), Expect = 9.7e-175
Identity = 313/401 (78.05%), Postives = 340/401 (84.79%), Query Frame = 0


Query: 1   MPPRTSRRRRQNQDGMQDPTQSQSETGSSTPRGQNEVGSERFARSAQEVGRPERVGPSDP 60
           MPPRT RRRRQNQDGMQ PTQ  S   SST   +   G+E+FAR+ QE+GR +R  PSDP
Sbjct: 39  MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDP 98

Query: 61  EKMYGIERLNKLGATVFEGSTDPADAEVWLNMLEKCFDVMSCPEERKVRLATFLLQKEAE 120
           EK YGIERL KLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKVRLATFLLQKEAE
Sbjct: 99  EKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAE 158

Query: 121 GWWKSIIARRSDARTLDWQTFRGIFEDKYYPTTYCEAKRDEFLGLKQGSLSVAEYERKYT 180
           GWWKSI+ARRSDAR LDWQTFRGIFEDKYYP+TYCEAKRDEFLGLKQGSLSVAEYERKYT
Sbjct: 159 GWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYT 218

Query: 181 ELSRYADVIVASKSDRCHKFERGLRFEIRTPVTAIGKWTDFFQLVETALRLEQSIIEQKS 240
           ELSRYADVI+AS+SDRC +FERGLRFEIRTPVTAI KWT+F QLVETALR+EQSI E+KS
Sbjct: 219 ELSRYADVIIASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKS 278

Query: 241 TVEPSRGAPTASSFRGREQRRFTPGVNVSGRQDFKSQFGGQSSRQMSLGSAYQRQSQRAP 300
            VE SRG  TAS FRGREQRRFTPG+N+S RQDFK++ GGQ+SR +S GS +QRQSQR P
Sbjct: 279 AVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIP 338

Query: 301 SQSASSVARPQTGQESVASESRRTPCTSCGKNHQGQCLVGVGVCYLCGQPGHFKRDCPQL 360
           SQ   S  R Q GQES+AS  RR PCTSCG+NH+GQCLVG GVCY CGQPGHFK+DCPQL
Sbjct: 339 SQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQL 398

Query: 361 RAAVQRDQGVESHTVEQPRVLASAGEGTSGTRQKRVVGRPR 402
              VQRDQGV S T+EQ RV     EGTSG RQK VVGRPR
Sbjct: 399 NMTVQRDQGVGSQTIEQSRVSVVPTEGTSGARQKGVVGRPR 439

[Close]

BLAST of Lag0008387 vs. ExPASy TrEMBL
Match: A0A5A7T1Y5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00980 PE=4 SV=1)

HSP 1 Score: 622.9 bits (1605), Expect = 9.7e-175
Identity = 313/401 (78.05%), Postives = 340/401 (84.79%), Query Frame = 0


Query: 1   MPPRTSRRRRQNQDGMQDPTQSQSETGSSTPRGQNEVGSERFARSAQEVGRPERVGPSDP 60
           MPPRT RRRRQNQDGMQ PTQ  S   SST   +   G+E+FAR+ QE+GR +R  PSDP
Sbjct: 39  MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDP 98

Query: 61  EKMYGIERLNKLGATVFEGSTDPADAEVWLNMLEKCFDVMSCPEERKVRLATFLLQKEAE 120
           EK YGIERL KLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKVRLATFLLQKEAE
Sbjct: 99  EKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAE 158

Query: 121 GWWKSIIARRSDARTLDWQTFRGIFEDKYYPTTYCEAKRDEFLGLKQGSLSVAEYERKYT 180
           GWWKSI+ARRSDAR LDWQTFRGIFEDKYYP+TYCEAKRDEFLGLKQGSLSVAEYERKYT
Sbjct: 159 GWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYT 218

Query: 181 ELSRYADVIVASKSDRCHKFERGLRFEIRTPVTAIGKWTDFFQLVETALRLEQSIIEQKS 240
           ELSRYADVI+AS+SDRC +FERGLRFEIRTPVTAI KWT+F QLVETALR+EQSI E+KS
Sbjct: 219 ELSRYADVIIASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKS 278

Query: 241 TVEPSRGAPTASSFRGREQRRFTPGVNVSGRQDFKSQFGGQSSRQMSLGSAYQRQSQRAP 300
            VE SRG  TAS FRGREQRRFTPG+N+S RQDFK++ GGQ+SR +S GS +QRQSQR P
Sbjct: 279 AVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIP 338

Query: 301 SQSASSVARPQTGQESVASESRRTPCTSCGKNHQGQCLVGVGVCYLCGQPGHFKRDCPQL 360
           SQ   S  R Q GQES+AS  RR PCTSCG+NH+GQCLVG GVCY CGQPGHFK+DCPQL
Sbjct: 339 SQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQL 398

Query: 361 RAAVQRDQGVESHTVEQPRVLASAGEGTSGTRQKRVVGRPR 402
              VQRDQGV S T+EQ RV     EGTSG RQK VVGRPR
Sbjct: 399 NMTVQRDQGVGSQTIEQSRVSVVPTEGTSGARQKGVVGRPR 439

[Close]

BLAST of Lag0008387 vs. ExPASy TrEMBL
Match: A0A5A7VQD2 (Putative Gag-pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00150 PE=4 SV=1)

HSP 1 Score: 622.9 bits (1605), Expect = 9.7e-175
Identity = 312/401 (77.81%), Postives = 341/401 (85.04%), Query Frame = 0


Query: 1   MPPRTSRRRRQNQDGMQDPTQSQSETGSSTPRGQNEVGSERFARSAQEVGRPERVGPSDP 60
           MPPRT RRRRQNQDGMQ PTQ  S   SST   +   G+E+FAR+ QE+GR +R  PSDP
Sbjct: 1   MPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRTDRAEPSDP 60

Query: 61  EKMYGIERLNKLGATVFEGSTDPADAEVWLNMLEKCFDVMSCPEERKVRLATFLLQKEAE 120
           EK YGIERL KLGATVFEGSTDPADAE WLNMLEKCFDVM+CPEERKVRLATFLLQKEAE
Sbjct: 61  EKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQKEAE 120

Query: 121 GWWKSIIARRSDARTLDWQTFRGIFEDKYYPTTYCEAKRDEFLGLKQGSLSVAEYERKYT 180
           GWWKSI+ARRSDAR LDWQTFRGIFEDKYYP+TYCEAKRDEFLGLKQGSLSVAEYERKYT
Sbjct: 121 GWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYERKYT 180

Query: 181 ELSRYADVIVASKSDRCHKFERGLRFEIRTPVTAIGKWTDFFQLVETALRLEQSIIEQKS 240
           ELSRYADVI+AS+SDRC +FERGLRFEIRTPVTAI KWT+F QLVETA+R+EQSI E+KS
Sbjct: 181 ELSRYADVIIASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETAIRVEQSITEEKS 240

Query: 241 TVEPSRGAPTASSFRGREQRRFTPGVNVSGRQDFKSQFGGQSSRQMSLGSAYQRQSQRAP 300
            VE SRG  TAS FRGREQRRFTPG+N+S RQDFK++ GGQ+SR +S GS +QRQSQR P
Sbjct: 241 AVELSRGTSTASGFRGREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIP 300

Query: 301 SQSASSVARPQTGQESVASESRRTPCTSCGKNHQGQCLVGVGVCYLCGQPGHFKRDCPQL 360
           SQ   S  R Q GQES+AS  RR PCTSCG+NH+GQCLVG GVCY CGQPGHFK+DCPQL
Sbjct: 301 SQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGAGVCYQCGQPGHFKKDCPQL 360

Query: 361 RAAVQRDQGVESHTVEQPRVLASAGEGTSGTRQKRVVGRPR 402
           +  VQRDQGV S T+EQ RV     EGTSG RQK VVGRPR
Sbjct: 361 KMTVQRDQGVGSQTIEQSRVSVVPTEGTSGARQKGVVGRPR 401

The following BLAST results are available for this feature:

BLAST of Lag0008387 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066849.1	2.0e-174	78.05	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0035455.1	2.0e-174	78.05	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1...	[more]
TYK06334.1	2.0e-174	78.05	putative polyprotein [Cucumis melo var. makuwa]	[more]
TYK27507.1	2.0e-174	78.05	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0056684.1	2.0e-174	78.05	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0008387 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0008387 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U2V7	9.7e-175	78.05	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BS67	9.7e-175	78.05	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A5D3BHI1	9.7e-175	78.05	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1Y5	9.7e-175	78.05	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold43...	[more]
A0A5A7VQD2	9.7e-175	77.81	Putative Gag-pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of Lag0008387 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 343..359 e-value: 2.9E-6 score: 36.8
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 343..359 e-value: 8.1E-8 score: 32.0
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 344..359 score: 11.169136
None	No IPR available	GENE3D	4.10.60.10		coord: 341..404 e-value: 4.1E-8 score: 35.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 265..331
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 239..331
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 84..362
None	No IPR available	PANTHER	PTHR34482:SF4	POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 84..362
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 110..205 e-value: 5.5E-14 score: 52.2
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 332..363

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0008387.1	Lag0008387.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding