Lag0008380 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0008380
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotransposon gag protein
Location	chr9: 19653476 .. 19657254 (-)
RNA-Seq Expression	Lag0008380
Synteny	Lag0008380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAGAATCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAAAGTGAACAAAGGACTTCCGTCTTCGATTGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGTGATCAACCTAAAAGAAAGATGGATAACTTTGAGGTGAAACTTTACGATGAAGTAAACAGCGGCAAGAAGCTTCAAAGTAGCATCTCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGATCAATCCTACAAGTCAAGGATCTAATCAAGACCATGATGAAGATAAGGGCTTTTAAAATGTAAAAGTTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGAGCAAAAATTTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAACTTAAAGAAGTTCAGTCTCTATAAAAAAAAAAGGTTCGTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCTTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGTTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCACTGTTGCATTGTTCCCTCTACTCTCAAGTTTGATAGTTCTCACGCAGCTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACATCCCTTCGGAGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACATCCCTTCGGAGCAGTTCCTTCCTCCAAGTTCGAAGGTCCTCACGCCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAGGGTTCTCACGCGCTTTGCTGCATTCCTTCCTCCAAGTTCGAGGTTCTCACGCGCTTCGCTGCAGTTCCTCCTCCAAGTTCGAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTCCTGACGCCGCTTCGCTCCAGTTCCTTCCTCCAAGTTCGAGGGGTTCTCACGCGCTTTTTGCCGCACTTCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCTCACATCCCTTCGGAGCAGTTCCTTCCTCAAAGTTCGAAGGTTCTCACATCCCTTCGGAGCAGTTCCTTACTCCAAGTTCGAAGGTTCTCACGCGCTTTGCTGCAGTTCCTCCAAGTTCGAGGTTCTCACGCGCTTCGCTGCAGTTCCTCCTCCAAGTTCGAGGTTCTCACGCGCTTCGCTGCAGTTCCTCCTCCAAGTTCGAGGTTCTTACGCGCTTCGCTGCAGTTCCTCCTCCAAGTTCGAGGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAGGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTCACGTTTCACACGTCGCTTCGCTGCGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCCGCTTCGTTGCAGTTCCTTCCTCATATTTTGAAGGTTCTCACGCCGCTTCGTTGCAGTTTCTTCCTCCAAGTTTGTAGGTTCTCACGCCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGCTTCGCTGTTGCAGTTTCTCCCAAGTCTGAAAGGTTTCTCCTGCGCTTCAAAGGCTCTCATGGGAAATATGTATCTTAAAATTTAAGATTTAACAATTTTGGGACTCGAACCCATGACCTTTAAATATGTAGCTTGGCTATTCAGGTCTTTTGGTTTACATTTGCTTGTTAATATATACATATATGTTATTCGGTGAACTCATGTTATTCTCAATCAAAATTTTGTCAAGCCCAAAATCAACCAAAGTCCAAACTCAAATTCTATTTCAAATGCAAGTTAAAATTGGATAGAATTTTACCTCAAGCCAAAGGTTTGACATAATCCAAATTTTATCTCAAATGGACCAGAGTCCAAACCTCAAATTCTATTCCAAATCCAAGTTAAAATTTGATAGAATTTTACTTCAAATTAAATTTTGAGCATAACCCAAATTTTATCCCAAATGGACCAGAGTCCAAACCTCAAATTCTATTCCAAATCCAAGTTAAAATTGGATAGAATTTTACTTCAAATTAAATTTTGCCATAATCCAAATTCTATCCCAAATGGACTAGAGTCCAAACCTCAAGTTCTATTCCATATGCAAGTTAAAATTGGGTAGGATTTTACCTCAAATCAAAATTTGGGTATAAACCAAATTTTGCCCAAACTTGAAACCAAAGTTTGCTGCCAAACAAGAAAATCAAAATTTTGACCAAACCTCAAATTTTGATTAATTGGCGATAAAAGTGTGTCAAATAAAAAAATCAAAATTTTGACCAAAATTCATATTTTGATTAAATTGACACACCAAATGGAGTCAAAGTCAAGAACAAATACCTTGCATTTTAATTCCAAAATATATTTTTGAGATTCACTCACACATAACTTGTGCCTAAATCTCGAAAAGGGGGCATTTGTTGAAGGAGAAATTTCGGCCAATCACAAATTGCCACGCCATTAATATAAATTAATGATAAAATAAATTTGGGACCAATTACACATTTACACGTGTGCCTAAATTAAATTTATAGACATTAAAATTCGGCAAATCAAAGAATGTCACTTGTCTATTAGTGATCCATCAGATAACATCAGTCAAGTTCAATCAAATTATGCCACGTGGCAATTGGACCAAGCCCAAGCCCATATGAGGTCCATCAAACTCTATAAATAGAGGAGGCCACCATTCATTCAGAGGGGAGATTCCGGCAGAGTCCAGAGAATTCTGCCAGAGTCCAGAGTCATCAGAAGTCAGAGAGTCTAGAGAATTTAGAAGATCCAAGATTCAAAATTCAACCAACTCAAGACTCAGAAGGTTTGAAGACTAGAAGACTCTAAGAAGAGAACAATAAGCCAATCGACCGATCAAGAAGATCAAAAGTCAGCAGGCCGATAATCCAAGAGGATCAACAAGCTAACAAGCCGATTCGACAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAACTAACAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGGTCGATCATCCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCAATCATCCAAGAAGATCAACAAGTCACAACAGGCCGATCCAAGAGATCATTAAGCCAGCAGGCCGATCATCCAAGAAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGCCGATCATCCAAGAAGCTCAACAAGCCAACAGGCCGATCATCCAAGAAGATCATCAAGCCAATAGGCCGATCCAAGAGATCATCAACCTAGCAAGCCAATCATCCAAGAAGCTCAACAAACCAGCCCAAGAAGATCAACAAGCTAGAGACCAAAGTTTATATATTTAA

mRNA sequence

ATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAGAATCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAAAGTGAACAAAGGACTTCCGTCTTCGATTGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGTGATCAACCTAAAAGAAAGATGGATAACTTTGAGGTGAAACTTTACGATGAAGTAAACAGCGGCAAGAAGCTTCAAAGTAGCATCTCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCGAAGGTTCTTCGTTGTATCCTGTTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCACTGTTGCATTGTTCCCTCTACTCTCAAGTTTGATAGTTCTCACGCAGCTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACATCCCTTCGGAGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACATCCCTTCGGAGCAGTTCCTTCCTCCAAGTTCGAAGGTCCTCACGCCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAGGGTTCTCACGCGCTTTGCTGCATTCCTTCCTCCAAGTTCGAGGTTCTCACGCGCTTCGCTGCAGTTCCTCCTCCAAGTTCGAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTCCTGACGCCGCTTCGCTCCAGTTCCTTCCTCCAAGTTCGAGGGGTTCTCACGCGCTTTTTGCCGCACTTCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCTCACATCCCTTCGGAGCAGTTCCTTCCTCAAAGTTCGAAGGTTCTCACATCCCTTCGGAGCAGTTCCTTACTCCAAGTTCGAAGGTTCTCACGCGCTTTGCTGCAGTTCCTCCAAGTTCGAGGTTCTCACGCGCTTCGCTGCAGTTCCTCCTCCAAGTTCGAGGTTCTCACGCGCTTCGCTGCAGTTCCTCCTCCAAGTTCGAGGTTCTTACGCGCTTCGCTGCAGTTCCTCCTCCAAGTTCGAGGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAGGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTCACGTTTCACACGTCGCTTCGCTGCGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGCTTCGCTGTTGCAGTTTCTCCCAAGTCTGAAAGAGGAGGCCACCATTCATTCAGAGGGGAGATTCCGGCAGAGTCCAGAGAATTCTGCCAGAGTCCAGAGTCATCAGAAGTCAGAGAGTCTAGAGAATTTAGAAGATCCAAGATTCAAAATTCAACCAACTCAAGACTCAGAAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAACTAACAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGGTCGATCATCCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCAATCATCCAAGAAGATCAACAAGTCACAACAGGCCGATCCAAGAGATCATTAAGCCAGCAGGCCGATCATCCAAGAAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGCCGATCATCCAAGAAGCTCAACAAGCCAACAGGCCGATCATCCAAGAAGATCATCAAGCCAATAGGCCGATCCAAGAGATCATCAACCTAGCAAGCCAATCATCCAAGAAGCTCAACAAACCAGCCCAAGAAGATCAACAAGCTAGAGACCAAAGTTTATATATTTAA

Coding sequence (CDS)

ATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAGAATCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAAAGTGAACAAAGGACTTCCGTCTTCGATTGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGTGATCAACCTAAAAGAAAGATGGATAACTTTGAGGTGAAACTTTACGATGAAGTAAACAGCGGCAAGAAGCTTCAAAGTAGCATCTCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCGAAGGTTCTTCGTTGTATCCTGTTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCACTGTTGCATTGTTCCCTCTACTCTCAAGTTTGATAGTTCTCACGCAGCTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACATCCCTTCGGAGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACATCCCTTCGGAGCAGTTCCTTCCTCCAAGTTCGAAGGTCCTCACGCCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAGGGTTCTCACGCGCTTTGCTGCATTCCTTCCTCCAAGTTCGAGGTTCTCACGCGCTTCGCTGCAGTTCCTCCTCCAAGTTCGAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTCCTGACGCCGCTTCGCTCCAGTTCCTTCCTCCAAGTTCGAGGGGTTCTCACGCGCTTTTTGCCGCACTTCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCTCACATCCCTTCGGAGCAGTTCCTTCCTCAAAGTTCGAAGGTTCTCACATCCCTTCGGAGCAGTTCCTTACTCCAAGTTCGAAGGTTCTCACGCGCTTTGCTGCAGTTCCTCCAAGTTCGAGGTTCTCACGCGCTTCGCTGCAGTTCCTCCTCCAAGTTCGAGGTTCTCACGCGCTTCGCTGCAGTTCCTCCTCCAAGTTCGAGGTTCTTACGCGCTTCGCTGCAGTTCCTCCTCCAAGTTCGAGGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAGGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTCACGTTTCACACGTCGCTTCGCTGCGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGCTTCGCTGTTGCAGTTTCTCCCAAGTCTGAAAGAGGAGGCCACCATTCATTCAGAGGGGAGATTCCGGCAGAGTCCAGAGAATTCTGCCAGAGTCCAGAGTCATCAGAAGTCAGAGAGTCTAGAGAATTTAGAAGATCCAAGATTCAAAATTCAACCAACTCAAGACTCAGAAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAACTAACAGGCCGATCATCCAAGAAGATCAACAAGCCAACAGGTCGATCATCCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCAATCATCCAAGAAGATCAACAAGTCACAACAGGCCGATCCAAGAGATCATTAAGCCAGCAGGCCGATCATCCAAGAAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGCCGATCATCCAAGAAGCTCAACAAGCCAACAGGCCGATCATCCAAGAAGATCATCAAGCCAATAGGCCGATCCAAGAGATCATCAACCTAGCAAGCCAATCATCCAAGAAGCTCAACAAACCAGCCCAAGAAGATCAACAAGCTAGAGACCAAAGTTTATATATTTAA

Protein sequence

MLNKSFSKTFHKKEKENLATSYCIDVEEVDNSKKSEQRTSVFDCIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNFEVKLYDEVNSGKKLQSSISSRMKRKFSVLINTEGSLKFEGSSLYPVALFLLQVRGFSVVRLLRCSSSKCEGSYVVHCCIVPSTLKFDSSHAASLEFLLPKFEGSHIPSEQFLPPSSKVLTSLRSSSFLQVRRSSRRFAAVPSSKFEGSHALCCIPSSKFEVLTRFAAVPPPSSRFSRASLQFLPPSSKVLTPLRSSSFLQVRGVLTRFLPHFVAVLSPQVRRFSHPFGAVPSSKFEGSHIPSEQFLTPSSKVLTRFAAVPPSSRFSRASLQFLLQVRGSHALRCSSSSKFEVLTRFAAVPPPSSRVLTRFAAVPSSKFEGSHALRCSSFLQVRRSRFTRRFAAFLPPSSKVLTPLRCSSFLQVRFAVAVSPKSERGGHHSFRGEIPAESREFCQSPESSEVRESREFRRSKIQNSTNSRLRRSSSQSTDQEDQQVSRPIIQEDQQTNRPIIQEDQQANRSIIQEDQQVSRPIIKPIIREDQQVSRPIIQEDQQANRPIIQEDQQVTTGRSKRSLSQQADHPRRSSSQQADPRDHQPSKPIIQEAQQANRPIIQEDHQANRPIQEIINLASQSSKKLNKPAQEDQQARDQSLYI

Homology

[Close]

BLAST of Lag0008380 vs. NCBI nr
Match: KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 4.3e-31
Identity = 87/138 (63.04%), Postives = 102/138 (73.91%), Query Frame = 0


Query: 14  EKENLATSYCIDVEEVDNSKKSEQRTSVFDCIKPPTTRPSVFQRMSMAATEEENQCSMST 73
           E +N   SY    EEVDNS + +QRTSVFD IKP TTR  VFQR+SMA  EEENQC MST
Sbjct: 52  EVDNNYDSY----EEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPMST 111

Query: 74  STRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNFEVKLYDEVNSGKKLQSSI 133
             R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M +F+ K + E N   K+ S +
Sbjct: 112 YARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKAKPFHEENDDDKIHSRV 171

Query: 134 SSRMKRKFSVLINTEGSL 152
            SRMKRK SV INTEGSL
Sbjct: 172 PSRMKRKLSVDINTEGSL 185

[Close]

BLAST of Lag0008380 vs. NCBI nr
Match: KAA0025725.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 9.6e-31
Identity = 82/125 (65.60%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 27  EEVDNSKKSEQRTSVFDCIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVS 86
           EEVDNS + +QRTSVFD IKP TTR S FQR+SMA  EEENQC  ST  R SAF+RLS+S
Sbjct: 120 EEVDNSNEIKQRTSVFDRIKPLTTRSSAFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 179

Query: 87  TSKKSRPSTSVFDRLKVTSDQPKRKMDNFEVKLYDEVNSGKKLQSSISSRMKRKFSVLIN 146
           TSKK RPSTS FDRLK+T+DQ +R+M + + K + E N   K++S +SSRMKRK SV IN
Sbjct: 180 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIRSRVSSRMKRKLSVGIN 239

Query: 147 TEGSL 152
           TEGSL
Sbjct: 240 TEGSL 244

[Close]

BLAST of Lag0008380 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 1.6e-30
Identity = 82/125 (65.60%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 27  EEVDNSKKSEQRTSVFDCIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVS 86
           EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EEENQC  ST  R SAF+RLS+S
Sbjct: 120 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 179

Query: 87  TSKKSRPSTSVFDRLKVTSDQPKRKMDNFEVKLYDEVNSGKKLQSSISSRMKRKFSVLIN 146
           TSKK RPSTS FDRLK+T+DQ +R+M + + K + E N   K+ S + SRMKRK SV IN
Sbjct: 180 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDIN 239

Query: 147 TEGSL 152
           TEGSL
Sbjct: 240 TEGSL 244

[Close]

BLAST of Lag0008380 vs. NCBI nr
Match: TYK16519.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 2.1e-30
Identity = 86/138 (62.32%), Postives = 101/138 (73.19%), Query Frame = 0


Query: 14  EKENLATSYCIDVEEVDNSKKSEQRTSVFDCIKPPTTRPSVFQRMSMAATEEENQCSMST 73
           E +N   SY    EEVDNS + +QRTSVFD IKP TTR  VFQR+SMA  EEENQC  ST
Sbjct: 382 EVDNNYDSY----EEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPTST 441

Query: 74  STRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNFEVKLYDEVNSGKKLQSSI 133
             R SAF+RLS+STSKK RPSTS FDRLK+T++Q KR+M +F+ K + E N   K+ S +
Sbjct: 442 YARTSAFKRLSISTSKKHRPSTSAFDRLKMTNNQQKREMKSFKAKPFHEQNDDNKIHSRV 501

Query: 134 SSRMKRKFSVLINTEGSL 152
            SRMKRK SV INTEGSL
Sbjct: 502 PSRMKRKLSVDINTEGSL 515

[Close]

BLAST of Lag0008380 vs. NCBI nr
Match: KAA0050736.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 2.8e-30
Identity = 85/138 (61.59%), Postives = 102/138 (73.91%), Query Frame = 0


Query: 14  EKENLATSYCIDVEEVDNSKKSEQRTSVFDCIKPPTTRPSVFQRMSMAATEEENQCSMST 73
           E +N   SY    EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EEENQC MST
Sbjct: 362 EVDNNYDSY----EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPMST 421

Query: 74  STRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNFEVKLYDEVNSGKKLQSSI 133
            TR SAF+RLS+S SKK RPSTS FDRLK+T+DQ +R+M + + K + E N   K+ S +
Sbjct: 422 YTRTSAFKRLSISRSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIYSRV 481

Query: 134 SSRMKRKFSVLINTEGSL 152
            SR+KRK S+ INTEGSL
Sbjct: 482 PSRIKRKLSIDINTEGSL 495

[Close]

BLAST of Lag0008380 vs. ExPASy TrEMBL
Match: A0A5A7SZJ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18735G00010 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.1e-31
Identity = 87/138 (63.04%), Postives = 102/138 (73.91%), Query Frame = 0


Query: 14  EKENLATSYCIDVEEVDNSKKSEQRTSVFDCIKPPTTRPSVFQRMSMAATEEENQCSMST 73
           E +N   SY    EEVDNS + +QRTSVFD IKP TTR  VFQR+SMA  EEENQC MST
Sbjct: 52  EVDNNYDSY----EEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPMST 111

Query: 74  STRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNFEVKLYDEVNSGKKLQSSI 133
             R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M +F+ K + E N   K+ S +
Sbjct: 112 YARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKAKPFHEENDDDKIHSRV 171

Query: 134 SSRMKRKFSVLINTEGSL 152
            SRMKRK SV INTEGSL
Sbjct: 172 PSRMKRKLSVDINTEGSL 185

[Close]

BLAST of Lag0008380 vs. ExPASy TrEMBL
Match: A0A5A7SMQ5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00040 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.6e-31
Identity = 82/125 (65.60%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 27  EEVDNSKKSEQRTSVFDCIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVS 86
           EEVDNS + +QRTSVFD IKP TTR S FQR+SMA  EEENQC  ST  R SAF+RLS+S
Sbjct: 120 EEVDNSNEIKQRTSVFDRIKPLTTRSSAFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 179

Query: 87  TSKKSRPSTSVFDRLKVTSDQPKRKMDNFEVKLYDEVNSGKKLQSSISSRMKRKFSVLIN 146
           TSKK RPSTS FDRLK+T+DQ +R+M + + K + E N   K++S +SSRMKRK SV IN
Sbjct: 180 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIRSRVSSRMKRKLSVGIN 239

Query: 147 TEGSL 152
           TEGSL
Sbjct: 240 TEGSL 244

[Close]

BLAST of Lag0008380 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 7.9e-31
Identity = 82/125 (65.60%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 27  EEVDNSKKSEQRTSVFDCIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVS 86
           EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EEENQC  ST  R SAF+RLS+S
Sbjct: 120 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 179

Query: 87  TSKKSRPSTSVFDRLKVTSDQPKRKMDNFEVKLYDEVNSGKKLQSSISSRMKRKFSVLIN 146
           TSKK RPSTS FDRLK+T+DQ +R+M + + K + E N   K+ S + SRMKRK SV IN
Sbjct: 180 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDIN 239

Query: 147 TEGSL 152
           TEGSL
Sbjct: 240 TEGSL 244

[Close]

BLAST of Lag0008380 vs. ExPASy TrEMBL
Match: A0A5D3D209 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003310 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.0e-30
Identity = 86/138 (62.32%), Postives = 101/138 (73.19%), Query Frame = 0


Query: 14  EKENLATSYCIDVEEVDNSKKSEQRTSVFDCIKPPTTRPSVFQRMSMAATEEENQCSMST 73
           E +N   SY    EEVDNS + +QRTSVFD IKP TTR  VFQR+SMA  EEENQC  ST
Sbjct: 382 EVDNNYDSY----EEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPTST 441

Query: 74  STRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNFEVKLYDEVNSGKKLQSSI 133
             R SAF+RLS+STSKK RPSTS FDRLK+T++Q KR+M +F+ K + E N   K+ S +
Sbjct: 442 YARTSAFKRLSISTSKKHRPSTSAFDRLKMTNNQQKREMKSFKAKPFHEQNDDNKIHSRV 501

Query: 134 SSRMKRKFSVLINTEGSL 152
            SRMKRK SV INTEGSL
Sbjct: 502 PSRMKRKLSVDINTEGSL 515

[Close]

BLAST of Lag0008380 vs. ExPASy TrEMBL
Match: A0A5A7U974 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00280 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.4e-30
Identity = 85/138 (61.59%), Postives = 102/138 (73.91%), Query Frame = 0


Query: 14  EKENLATSYCIDVEEVDNSKKSEQRTSVFDCIKPPTTRPSVFQRMSMAATEEENQCSMST 73
           E +N   SY    EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EEENQC MST
Sbjct: 362 EVDNNYDSY----EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPMST 421

Query: 74  STRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNFEVKLYDEVNSGKKLQSSI 133
            TR SAF+RLS+S SKK RPSTS FDRLK+T+DQ +R+M + + K + E N   K+ S +
Sbjct: 422 YTRTSAFKRLSISRSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIYSRV 481

Query: 134 SSRMKRKFSVLINTEGSL 152
            SR+KRK S+ INTEGSL
Sbjct: 482 PSRIKRKLSIDINTEGSL 495

The following BLAST results are available for this feature:

BLAST of Lag0008380 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036008.1	4.3e-31	63.04	Retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0025725.1	9.6e-31	65.60	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0044978.1	1.6e-30	65.60	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK16519.1	2.1e-30	62.32	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0050736.1	2.8e-30	61.59	retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotranspos...	[more]

BLAST of Lag0008380 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0008380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SZJ7	2.1e-31	63.04	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7SMQ5	4.6e-31	65.60	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7TQ06	7.9e-31	65.60	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3D209	1.0e-30	62.32	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7U974	1.4e-30	61.59	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Lag0008380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 510..527
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 678..708
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 488..563
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 654..668
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 528..563
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 601..639
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 598..708

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0008380.1	Lag0008380.1	mRNA