Lag0008345 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0008345
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LEA_2 domain-containing protein
Location	chr9: 18491517 .. 18492566 (+)
RNA-Seq Expression	Lag0008345
Synteny	Lag0008345

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAAGTGAACATTTGATACAACTGCATTTAAAGTAAAGAAAACTGAAAAATAAACAACATCATTTTTTCAGGGAAGAATCTCTACATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAATTAGAATTTTAAAACTCAAACATAAACAGAAAATAAATCTATTTCTGTAAGATAACAGATTGAAGAGCCAACTACTCTACTTTAGTTAACCAGGCAAACAATCATGCATGGGGCCATAATAATAGTCAATACAGTCCATTTATAGACAAAAAGATAATCAATTGGGCAAAACCAAAAAAAAAAAATTATCTTAACTTGATCATTCAATCATGTATCTAAGTCATATAATAATAATACCCTGAAATGAATAGCCTAAAAATTCAGTGAAAGAAAAAAAAAATCAATCCATTGTTTAATGTAAAATCTGATCCTTTCAGAGCTTGGTTGTGCATAATTTTTATGTTGGGGAAGGTTCAGATTCCACTGGAGTTCCTACCAAGTTGCTGATATTAAACATCACATTGAGGTTAAGTGTAGACAACCCTGCAACAGTATTTGGAATTCATGTCACCTCCACACCAATTGATCTCATTTATTCAGAGATTGTTGTGGCATCTGGCCAGGTAATGAACTTATGCTGAGCTTCTCTTTTTTTGACTCACAACTTTTGGAACTAATTGGTTTGAAGAAAGAGCTTGGATTAGAGGCCATTCTGTCAAATGCTTTAGCAGGCTTGTCTTAGACAATAAAATTAAGAGGTAAACACAAAATACAGGATTGGAATGTAAATCTTGACAAGAATTTGTGATTGTTCAATGAAAAATTGGCCAAGGACATCAACTCGTATGCCTTGTGATCCTATGTGCAGTTGAGGAAATATTACCGGTCAAGAAACAGTCACCGAACAGTATCTGTCAACTTGGAAGGAATCAAGGTTCCTATGTATGGAGCTGCATCAACTTTGACTGTTCCCCCAGCAACAGCAAGTAGTCCGGTTCCAATGACGTTGGTGTTCACGCAAACAAGGAAAATCAAGAAACCAAGCTGA

mRNA sequence

ATGGAAAAAAGCTTGGTTGTGCATAATTTTTATGTTGGGGAAGGTTCAGATTCCACTGGAGTTCCTACCAAGTTGCTGATATTAAACATCACATTGAGGTTAAGTGTAGACAACCCTGCAACAGTATTTGGAATTCATGTCACCTCCACACCAATTGATCTCATTTATTCAGAGATTGTTGTGGCATCTGGCCAGTTGAGGAAATATTACCGGTCAAGAAACAGTCACCGAACAGTATCTGTCAACTTGGAAGGAATCAAGGTTCCTATGTATGGAGCTGCATCAACTTTGACTGTTCCCCCAGCAACAGCAAGTAGTCCGGTTCCAATGACGTTGGTGTTCACGCAAACAAGGAAAATCAAGAAACCAAGCTGA

Coding sequence (CDS)

ATGGAAAAAAGCTTGGTTGTGCATAATTTTTATGTTGGGGAAGGTTCAGATTCCACTGGAGTTCCTACCAAGTTGCTGATATTAAACATCACATTGAGGTTAAGTGTAGACAACCCTGCAACAGTATTTGGAATTCATGTCACCTCCACACCAATTGATCTCATTTATTCAGAGATTGTTGTGGCATCTGGCCAGTTGAGGAAATATTACCGGTCAAGAAACAGTCACCGAACAGTATCTGTCAACTTGGAAGGAATCAAGGTTCCTATGTATGGAGCTGCATCAACTTTGACTGTTCCCCCAGCAACAGCAAGTAGTCCGGTTCCAATGACGTTGGTGTTCACGCAAACAAGGAAAATCAAGAAACCAAGCTGA

Protein sequence

MEKSLVVHNFYVGEGSDSTGVPTKLLILNITLRLSVDNPATVFGIHVTSTPIDLIYSEIVVASGQLRKYYRSRNSHRTVSVNLEGIKVPMYGAASTLTVPPATASSPVPMTLVFTQTRKIKKPS

Homology

[Close]

BLAST of Lag0008345 vs. NCBI nr
Match: XP_022150162.1 (uncharacterized protein LOC111018406 [Momordica charantia])

HSP 1 Score: 190.3 bits (482), Expect = 1.0e-44
Identity = 98/112 (87.50%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 3   KSLVVHNFYVGEGSDSTGVPTKLLILNITLRLSVDNPATVFGIHVTSTPIDLIYSEIVVA 62
           KSL VHNFYVGEGSDSTGVPTKLL LN TLRLSV NPAT+FGIHVTSTPIDLIYSEIVVA
Sbjct: 156 KSLAVHNFYVGEGSDSTGVPTKLLTLNSTLRLSVYNPATIFGIHVTSTPIDLIYSEIVVA 215

Query: 63  SGQLRKYYRSRNSHRTVSVNLEGIKVPMYGAASTLTVPPATASSPVPMTLVF 115
           SGQL+KYY+ RNSHRT+SVNLEGIKVPMYGAASTLTVPP   S PVPMTL+F
Sbjct: 216 SGQLKKYYQPRNSHRTLSVNLEGIKVPMYGAASTLTVPP--TSGPVPMTLMF 265

[Close]

BLAST of Lag0008345 vs. NCBI nr
Match: XP_004141769.1 (uncharacterized protein LOC101220910 [Cucumis sativus] >KGN45378.1 hypothetical protein Csa_016273 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.0e-44
Identity = 99/112 (88.39%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 3   KSLVVHNFYVGEGSDSTGVPTKLLILNITLRLSVDNPATVFGIHVTSTPIDLIYSEIVVA 62
           KSL VHNFYVGEGSDSTGVPTKLL LN TLRLSV NPAT+FGIHVTSTPIDLIYSEIVVA
Sbjct: 157 KSLAVHNFYVGEGSDSTGVPTKLLTLNSTLRLSVYNPATIFGIHVTSTPIDLIYSEIVVA 216

Query: 63  SGQLRKYYRSRNSHRTVSVNLEGIKVPMYGAASTLTVPPATASSPVPMTLVF 115
           SGQL+KYY+ RNSHR VSVNLEGIKVPMYGAASTLTVPP   SSPVPMTL F
Sbjct: 217 SGQLKKYYQPRNSHRRVSVNLEGIKVPMYGAASTLTVPP--TSSPVPMTLAF 266

[Close]

BLAST of Lag0008345 vs. NCBI nr
Match: XP_008462165.1 (PREDICTED: uncharacterized protein LOC103500589 [Cucumis melo] >KAA0059303.1 uncharacterized protein E6C27_scaffold242G00260 [Cucumis melo var. makuwa] >TYK04025.1 uncharacterized protein E5676_scaffold347G002240 [Cucumis melo var. makuwa])

HSP 1 Score: 189.5 bits (480), Expect = 1.7e-44
Identity = 99/112 (88.39%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 3   KSLVVHNFYVGEGSDSTGVPTKLLILNITLRLSVDNPATVFGIHVTSTPIDLIYSEIVVA 62
           KSL VHNFYVGEGSDSTGVPTKLL LN TLRLSV NPAT+FGIHVTSTPIDLIYSEIVVA
Sbjct: 157 KSLAVHNFYVGEGSDSTGVPTKLLTLNSTLRLSVYNPATIFGIHVTSTPIDLIYSEIVVA 216

Query: 63  SGQLRKYYRSRNSHRTVSVNLEGIKVPMYGAASTLTVPPATASSPVPMTLVF 115
           SGQL+KYY+ RNSHR VSVNLEGIKVPMYGAASTLTVPP   SSPVPMTL F
Sbjct: 217 SGQLKKYYQPRNSHRRVSVNLEGIKVPMYGAASTLTVPP--TSSPVPMTLSF 266

[Close]

BLAST of Lag0008345 vs. NCBI nr
Match: XP_022964211.1 (uncharacterized protein LOC111464298 [Cucurbita moschata] >XP_023513962.1 uncharacterized protein LOC111778399 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.7 bits (478), Expect = 3.0e-44
Identity = 98/112 (87.50%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 3   KSLVVHNFYVGEGSDSTGVPTKLLILNITLRLSVDNPATVFGIHVTSTPIDLIYSEIVVA 62
           KSL VHNFYVGEGSDSTGVPTKLL LN TLRLSV NPAT+FGIHVTSTPIDLIYSEIVVA
Sbjct: 156 KSLAVHNFYVGEGSDSTGVPTKLLTLNSTLRLSVYNPATIFGIHVTSTPIDLIYSEIVVA 215

Query: 63  SGQLRKYYRSRNSHRTVSVNLEGIKVPMYGAASTLTVPPATASSPVPMTLVF 115
           SGQLRKYY+ RNSHRTVSVNLEGIKVPMYGAASTL++P  + S PVPMTLVF
Sbjct: 216 SGQLRKYYQPRNSHRTVSVNLEGIKVPMYGAASTLSLP--STSGPVPMTLVF 265

[Close]

BLAST of Lag0008345 vs. NCBI nr
Match: KAG6593462.1 (hypothetical protein SDJN03_12938, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.7 bits (478), Expect = 3.0e-44
Identity = 98/112 (87.50%), Postives = 103/112 (91.96%), Query Frame = 0


Query: 3   KSLVVHNFYVGEGSDSTGVPTKLLILNITLRLSVDNPATVFGIHVTSTPIDLIYSEIVVA 62
           KSL VHNFYVGEGSDSTGVPTKLL LN TLRLSV NPAT+FGIHVTSTPIDLIYSEIVVA
Sbjct: 156 KSLAVHNFYVGEGSDSTGVPTKLLTLNSTLRLSVYNPATIFGIHVTSTPIDLIYSEIVVA 215

Query: 63  SGQLRKYYRSRNSHRTVSVNLEGIKVPMYGAASTLTVPPATASSPVPMTLVF 115
           SGQLRKYY+ RNSHRTVSVNLEGIKVPMYGAASTL++P  + S PVPMTLVF
Sbjct: 216 SGQLRKYYQPRNSHRTVSVNLEGIKVPMYGAASTLSLP--STSGPVPMTLVF 265

The following BLAST results are available for this feature:

BLAST of Lag0008345 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150162.1	1.0e-44	87.50	uncharacterized protein LOC111018406 [Momordica charantia]	[more]
XP_004141769.1	1.0e-44	88.39	uncharacterized protein LOC101220910 [Cucumis sativus] >KGN45378.1 hypothetical ...	[more]
XP_008462165.1	1.7e-44	88.39	PREDICTED: uncharacterized protein LOC103500589 [Cucumis melo] >KAA0059303.1 unc...	[more]
XP_022964211.1	3.0e-44	87.50	uncharacterized protein LOC111464298 [Cucurbita moschata] >XP_023513962.1 unchar...	[more]
KAG6593462.1	3.0e-44	87.50	hypothetical protein SDJN03_12938, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0008345 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31852:SF136	OS01G0228500 PROTEIN	coord: 3..112
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 3..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0008345.1	Lag0008345.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane