Lag0008337 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0008337
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr9: 18087634 .. 18088994 (-)
RNA-Seq Expression	Lag0008337
Synteny	Lag0008337

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGAGCATCCGTCGATTGGCACTCGATGTGACTCATCACATCCTGGGGTTGAAGAAGGTCCAAGGTTCGGTTGTTCGCCGATTCAAGTGGTACGTGAGTTGGTTTAGAACGTCGTGAGACAGTTCGGTTCCTATCTACGTTGGTGTTAAAGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGACTGGGTTGGGCCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACCGCAGCGCGCGGGAAATCCTTCTCTATACAAGTTCTCGGGCGAGCTTTTTGAACAGAACTTCGATAGGCGAGAGGTGTAAGCACCGCGAGTTGTGAAGCGATCTCGTACTAAACGAAACGACTTTCACTTTCCATAACAAAAATGAAAGAAAGTCAACCTATTCCTGCAATTGCGGTCAGTCTCGCTACCTCTTTAGTTGCCGCCCCCTACTTGCTCATTCGAAATGACTACCACAAGAAAGTAGCTCCTATCTCTAAGGGGCTTATGCACTCCACGACTTTCTTATGTTATGGGGTCGACTGAATTTAGCTGCCAACCCTAGTAAGCAAGTGAAAAAGCCCTTTCTCCTTTCTCTAATAAGAAGGTCCGCTTTGAAGCTCCAACCTATACAAGGGGCCTTGGCCTAGCTTACTAAGCGCTGGTTCGAGACCGGCCAAGCAACCCCCGGGGTAGGAATAGTGAAAGAAAGATAAGGGGAAGAAGCGGAGTAGAGGAATTGGTCGACTCATCAGGCCCATGACCTGAAGACTGCAGGTTCGAATCCTGTCCCCGCCTAATCACTTGAGATGCATTTTTTGTATCGGTGGTACTTGACAAGGAGGGAATAATGTCTTTCTTATTTCGACCTTTCTTTCCCTAGGAACAGGCAAATCAAAAATTTCACTTCGGAATTCTCAACTGTTAAAAGGTAAAAAATGGATAGGTGTCGTGGCATTCATTTCTCTTTTTAACCAGTACGCAGCTGGTGTATTTTTACACGAGATGTCATACATAGCTTTGATTGGGAAAGAGTACGGCGGATTTTTCACCTTTCTGTTTCAGTAGTGGTTTGTGTCGTAATTCTACTTGACTTTCTTTATTGAGATAATGGAAGCTTCTTGTGTCGGGTCGAAGAATGTGCGGGCTCGGAGGCTCAAAATCTAGCTTCGGCTAGCAGGCCGACGGCACCGGCAGAGGCGGCTCCAGCTCATCGCAATCCTGCTCATGCAACCCCCCAGGCGGAAATTTCCCAAGAAGATCTATGGACTGAGTTGGAACAACCTCTGATGCTCGCAGCAGGAAGAGGCTGTTGTGGGATTAAATATTCTATATGA

mRNA sequence

ATGCATGAGCATCCGTCGATTGGCACTCGATGTGACTCATCACATCCTGGGGTTGAAGAAGGTCCAAGGTTCGGTTGTTCGCCGATTCAAGTGCGCCGGGCAGCTAAGTTGGTATGGAAGAACCGCAGCGCGCGGGAAATCCTTCTCTATACAAGTTCTCGGGCGAGCTTTTTGAACAGAACTTCGATAGGCGAGAGGTATAATGGAAGCTTCTTGTGTCGGGTCGAAGAATGTGCGGGCTCGGAGGCTCAAAATCTAGCTTCGGCTAGCAGGCCGACGGCACCGGCAGAGGCGGCTCCAGCTCATCGCAATCCTGCTCATGCAACCCCCCAGGCGGAAATTTCCCAAGAAGATCTATGGACTGAGTTGGAACAACCTCTGATGCTCGCAGCAGGAAGAGGCTGTTGTGGGATTAAATATTCTATATGA

Coding sequence (CDS)

ATGCATGAGCATCCGTCGATTGGCACTCGATGTGACTCATCACATCCTGGGGTTGAAGAAGGTCCAAGGTTCGGTTGTTCGCCGATTCAAGTGCGCCGGGCAGCTAAGTTGGTATGGAAGAACCGCAGCGCGCGGGAAATCCTTCTCTATACAAGTTCTCGGGCGAGCTTTTTGAACAGAACTTCGATAGGCGAGAGGTATAATGGAAGCTTCTTGTGTCGGGTCGAAGAATGTGCGGGCTCGGAGGCTCAAAATCTAGCTTCGGCTAGCAGGCCGACGGCACCGGCAGAGGCGGCTCCAGCTCATCGCAATCCTGCTCATGCAACCCCCCAGGCGGAAATTTCCCAAGAAGATCTATGGACTGAGTTGGAACAACCTCTGATGCTCGCAGCAGGAAGAGGCTGTTGTGGGATTAAATATTCTATATGA

Protein sequence

MHEHPSIGTRCDSSHPGVEEGPRFGCSPIQVRRAAKLVWKNRSAREILLYTSSRASFLNRTSIGERYNGSFLCRVEECAGSEAQNLASASRPTAPAEAAPAHRNPAHATPQAEISQEDLWTELEQPLMLAAGRGCCGIKYSI

Homology

[Close]

BLAST of Lag0008337 vs. NCBI nr
Match: KAG8365806.1 (hypothetical protein BUALT_Bualt17G0010100 [Buddleja alternifolia])

HSP 1 Score: 64.7 bits (156), Expect = 7.4e-07
Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 12  DSSHPGVEEGPRFGCSPIQVRRAAKLVWKNRSA--REILLYTSSRASFLNRTSIGER 67
           DSSHPGVEEGP+ G    + + A +L W  R+A  REILLYTSSR  FLNRTSIGER
Sbjct: 74  DSSHPGVEEGPK-GSVVRRFKCAGQLSWYGRTAAQREILLYTSSRMRFLNRTSIGER 129

The following BLAST results are available for this feature:

BLAST of Lag0008337 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG8365806.1	7.4e-07	64.91	hypothetical protein BUALT_Bualt17G0010100 [Buddleja alternifolia]	[more]

BLAST of Lag0008337 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0008337.1	Lag0008337.1	mRNA