Lag0008325 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0008325
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Nodulin-like domain-containing protein
Location	chr9: 17664564 .. 17664950 (+)
RNA-Seq Expression	Lag0008325
Synteny	Lag0008325

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCTCTTCGGCTACATGATGATTTGGTTGGCCGTAACCAGCCGGATCCCGAAGCCCCAGATCTGGCATATGTGTCTCTACATTTCTTCCCTCCTCCCTCCCCGTCCTTCGCGCGGCAGATCTAGATCTGGAACGAAACAGCCACCAGATCTGGAACAAAACGATCTCCCCTCCAAAATCTGGAACGAACAACTGAAACAGCCACCGGAGATCTGGAACGAACGAACGAAAAAACCACCAGAGGCGAGAGGAGGACGACGATGTGTGCGTCTGGAGGAGGAGGACGACGGAGTTTTGGGGTCATTGGGAGGAGGAGGACGACGGGTTTGGCACGAGCGTTGGGTGAAGACGAATGTGCGGCTGCAACGGGCGTTCCAGATCTAG

mRNA sequence

ATGAACCTCTTCGGCTACATGATGATTTGGTTGGCCGTAACCAGCCGGATCCCGAAGCCCCAGATCTGGCATATGTGTCTCTACATTTCTTCCCTCCTCCCTCCCCGTCCTTCGCGCGGCAGATCTAGATCTGGAACGAAACAGCCACCAGATCTGGAACAAAACGATCTCCCCTCCAAAATCTGGAACGAACAACTGAAACAGCCACCGGAGATCTGGAACGAACGAACGAAAAAACCACCAGAGGCGAGAGGAGGACGACGATGTGTGCGTCTGGAGGAGGAGGACGACGGAGTTTTGGGGTCATTGGGAGGAGGAGGACGACGGGTTTGGCACGAGCGTTGGGTGAAGACGAATGTGCGGCTGCAACGGGCGTTCCAGATCTAG

Coding sequence (CDS)

ATGAACCTCTTCGGCTACATGATGATTTGGTTGGCCGTAACCAGCCGGATCCCGAAGCCCCAGATCTGGCATATGTGTCTCTACATTTCTTCCCTCCTCCCTCCCCGTCCTTCGCGCGGCAGATCTAGATCTGGAACGAAACAGCCACCAGATCTGGAACAAAACGATCTCCCCTCCAAAATCTGGAACGAACAACTGAAACAGCCACCGGAGATCTGGAACGAACGAACGAAAAAACCACCAGAGGCGAGAGGAGGACGACGATGTGTGCGTCTGGAGGAGGAGGACGACGGAGTTTTGGGGTCATTGGGAGGAGGAGGACGACGGGTTTGGCACGAGCGTTGGGTGAAGACGAATGTGCGGCTGCAACGGGCGTTCCAGATCTAG

Protein sequence

MNLFGYMMIWLAVTSRIPKPQIWHMCLYISSLLPPRPSRGRSRSGTKQPPDLEQNDLPSKIWNEQLKQPPEIWNERTKKPPEARGGRRCVRLEEEDDGVLGSLGGGGRRVWHERWVKTNVRLQRAFQI

Homology

[Close]

BLAST of Lag0008325 vs. NCBI nr
Match: XP_023005202.1 (protein NUCLEAR FUSION DEFECTIVE 4-like [Cucurbita maxima])

HSP 1 Score: 64.7 bits (156), Expect = 6.6e-07
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1   MNLFGYMMIWLAVTSRIPKPQIWHMCLYI 30
           MNLFGY MIW+AVTSRIPKPQIWHMCLYI
Sbjct: 94  MNLFGYTMIWMAVTSRIPKPQIWHMCLYI 122

[Close]

BLAST of Lag0008325 vs. NCBI nr
Match: XP_023540992.1 (protein NUCLEAR FUSION DEFECTIVE 4-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023540993.1 protein NUCLEAR FUSION DEFECTIVE 4-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023540994.1 protein NUCLEAR FUSION DEFECTIVE 4-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.7 bits (156), Expect = 6.6e-07
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1   MNLFGYMMIWLAVTSRIPKPQIWHMCLYI 30
           MNLFGY MIW+AVTSRIPKPQIWHMCLYI
Sbjct: 94  MNLFGYTMIWMAVTSRIPKPQIWHMCLYI 122

[Close]

BLAST of Lag0008325 vs. NCBI nr
Match: KAG6596491.1 (Protein NUCLEAR FUSION DEFECTIVE 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 6.6e-07
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1   MNLFGYMMIWLAVTSRIPKPQIWHMCLYI 30
           MNLFGY MIW+AVTSRIPKPQIWHMCLYI
Sbjct: 94  MNLFGYTMIWMAVTSRIPKPQIWHMCLYI 122

[Close]

BLAST of Lag0008325 vs. NCBI nr
Match: XP_023522337.1 (protein NUCLEAR FUSION DEFECTIVE 4-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.7 bits (156), Expect = 6.6e-07
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1   MNLFGYMMIWLAVTSRIPKPQIWHMCLYI 30
           MNLFGY MIW+AVTSRIPKPQIWHMCLYI
Sbjct: 94  MNLFGYTMIWMAVTSRIPKPQIWHMCLYI 122

[Close]

BLAST of Lag0008325 vs. NCBI nr
Match: XP_022947808.1 (protein NUCLEAR FUSION DEFECTIVE 4-like [Cucurbita moschata])

HSP 1 Score: 64.7 bits (156), Expect = 6.6e-07
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1   MNLFGYMMIWLAVTSRIPKPQIWHMCLYI 30
           MNLFGY MIW+AVTSRIPKPQIWHMCLYI
Sbjct: 94  MNLFGYTMIWMAVTSRIPKPQIWHMCLYI 122

The following BLAST results are available for this feature:

BLAST of Lag0008325 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005202.1	6.6e-07	93.10	protein NUCLEAR FUSION DEFECTIVE 4-like [Cucurbita maxima]	[more]
XP_023540992.1	6.6e-07	93.10	protein NUCLEAR FUSION DEFECTIVE 4-like isoform X1 [Cucurbita pepo subsp. pepo] ...	[more]
KAG6596491.1	6.6e-07	93.10	Protein NUCLEAR FUSION DEFECTIVE 4, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_023522337.1	6.6e-07	93.10	protein NUCLEAR FUSION DEFECTIVE 4-like, partial [Cucurbita pepo subsp. pepo]	[more]
XP_022947808.1	6.6e-07	93.10	protein NUCLEAR FUSION DEFECTIVE 4-like [Cucurbita moschata]	[more]

BLAST of Lag0008325 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010658	Nodulin-like	PFAM	PF06813	Nodulin-like	coord: 1..30 e-value: 4.4E-7 score: 29.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0008325.1	Lag0008325.1	mRNA